Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0245800 | OGI:11022760 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:7860100-7864643 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TAGAGCGAATTATGAACTTAACTTCGTTCCCATCACCGCAGGTGCTGCAGCGCTTGACGATGCTTAAAAGATTATATATCCGTTCTTGCTGGTGCCTCAGATCATTGGGTGGCTTACGAGAGGCAACCTCCCTTTCAGAAGTTAAGATAGATTCATGCATCTCATTAGAGTTGGTGGATGAAAATGGAATAGCTGTTATGCCATCCTCTATTGGAAAGCTCTCTCTATTTGGCTGCATACTAGGGGCCAATTTCCTCAGTACTGACTTCCCACGTCTGCGTAGCATTTCCATCACATGCTGCCGAAGCTCTTCATCATTTGCTATTGGTCATCTGCGTTCCCTGGAATCACTCTCACTGAATAACATGCCAGACTTGTGCTTTCTTGAAGGCTTATCATGTCCACATCTCCAGGACATACATCTGATAAATGTTCCAAATCTTACCGCAGAGTCTTTTTCCCGGCATCATGCATGGAAATCACTCGCTATTAGTAGCTCTGCTATGCTCAGTCTCATGCTCTCTATAAAGGATTTCATGCTCCCAGAGAAACTCTGTTTTGAACAATACGACGAGCCATCCATTACATTTCAAAGCTCTGCAAATTTCACATCTATCAAGTTTCTAGAGTTCAGGGATTCTAAAGTCATGTACCTGCCAAGCAGTTTGAAGAACCTGTCCAGTCTGGAGAGGATCAAATTTGTCAGGATCCCCAACTTATCATCTCTACCAGATTTCCCTAATTCTATCCAGCAAATTGAAATACAAGACTGCGAGTGCTTGAAAAGAAGCTGCCAGGCACCTAATGGAGAAAACTGGCAAAAGATTGAGTGCATCCGTTGGAAGCTTATCGAAGTTTCCAAACCTGATGAAAGTATAGCGTGGTTCATGTAAGTTACGATAGATTTACATCTGCAATAGTTATATTTTGGATCAGTCATACAAAAAGTTAGGCCTTACTAGTATGTGTGTGTGTTGGATAAAAAACTTTGAGGGTATCGCTGAACATATTCACCGAAGATTCATCGTTTTTTTGGATGGGTTCAATTATGACAAAGAAATCATTAATTGCTAATTTCTGCATTAATGCTTACATAGAGACTCTAACGAATGTTTAATGGACTTATTAAGTTTAAAAATATAAATTCCTGAAATAATAAACATTGATTTATAATTATGCATGTGTTACAATATTAATGATCCAGGTCTAACAACTACTAGTACAATTAATTTTGTTTTGAAAATCTCTACTTATTCCATTAAGATTTTATTGTTCTGGTCCTGTCAGACACAGGTATGATAAAGTTGGAATAGCTGCCTACCCTAAGAAGCTACAGCCTGGACAACCTGTGGTCTGGTAAGTTTGTCATTTGACACTCTTTATTTTTCTTGGGGGTGTCTAATGATCGAAATGCTCCTGCAAGGGCACGATGAGTTGTTCGGTTGCTAATTTAGTACTCCATAAATATTATTACCTCTGTTTTTCAATGTATGACGCCGTCCACTTTTTGACAAATGTTTTGATCATTTGTCTTATTTAAAATTTTTGTGTAAATATAAAAAGTTTTAAGTCATGCTTAAAGAACATTTGATGATAAATCGAGTCACAACAAAATAAATAATAGTTATATAATTTTTTTGAAAAAGACGAATAGTCAAATATATCTTAAAATATCAACGGCGTTATATATTAAAAAACGGAGGGAGTACAACTTGGCATGCTAACACTAGAGGTGCATCATTATGGTGTTACGGACTCTTGTTCCTGTTACTGAACAAATGAGCCATTAGATTTTCTGGGCCTATTTGAGTAGATGAAAGCCTAATTTTGTTGTGTGCGGTTACATACAAAGCATATGAAATATACTCCCGTCCCAAAATATAAGCATTTTTTATCCTGACACGGTCTCCGATATGCTACTTTGACCAACAATATCTATAAAAGTAAGATGCTTTAAATAAAAAGAGTTGCATATTATGATTGTTTTAATAATAAATCTAGTAACATCAATTATACATGATTGATCTTTTTTGTATTTTTTTGCTATTAATGGTCAAAATTGAAAATGTTTGACTTGTCACTATGCTAAAAATGCTTATATTTTGGGATGGAGGGAGTAGGTTCTTTTACCATAATATAAGGATGCACTAACCAGTACATTGTGTAGTTGAGGTGCTGTGATGCAAATTACTACTGTCCGTATAAGGCACAAATCAAGTAACTGTGTATTTTCAATGAATAAGCAAACGCTAGGAATGACTCCTTTACTTTTTACAGGCACGACAAGAATCACTGAGTAATTAACAACTCATCACAACTGAACTGCCGCTGACCCGCTGTTTAAAACCCGTAAACAGAATCACATCTCTTGTTCGTCCATGTCTCCAGGACGGCAGACTGCTGCTACCGTTGCAGTTGGCAGCATATGAATCATCTTTTTCCTCTGGATGAAATTTCATTGGGGAACAAAATCATTTTTTTCCCCAGGGGATGCAAAGCTCATATTCTCATAAATGGTTCAGTCAAATAATTAAATAGAGTTTTAAGTTCTCTAATCCTATGAATGTTTGTGAATGTCAGGGCACCAGTGCGCCATCGCCCACTCACCGAGGGCTCGCCACACCCTCTCTCCTCTGCCAGGTGAGGGATGGTGTCGTGGCAGCAACAACGTCTTCAGGAGAAGATGAAGCGGCGATGTTGGAGAACTGGGTCGCGGGGAACGGAGAACTCCTGGTACGAGGCGCTCATGTTAAACTCAAAAAGGGACTCTTCCTTTCTTCTGAGTTCAGGCAATGCACTGCTAATTGTCTATTCATATCTACGACTATAAGCACCCCACTACCCACTTGTATAGTTGTATTTGATGGAACAGCTCTTATTAAAAGGTGGCGTAACCCAACCAAAATGCAGGGAATGTTCATGCATAAGGATTTACTACTCCGTTCTAGAAAGAATCCAATCCTAGCAGCGAACCTGCGTGTCCAGGTTCGTTGCTAGGATTGGATTCTTTTTGGAATGGAGGGGGTAGAAGATATCACTATTTTTATAAACTTAATCCTGAATGAAAAGTTTCGGATCTACAGATAGTGAGATAAATAACCCCTTCCATTGGTTTTGAATTTTCTGACACTTCCTAATTCAGGCAGGGTGCATGAGTTCGAATTCAAATCTGCATTCTCTCCACAACAATAAATGAAGAGTGAAGCCATGACGTACGATCCAAATTCCCATGTGTTATCCTTGCCAGTACTAATTGGAATTTGGCAAATTCCCATGGGTTCCGGTACTGTGCATGTCAGTTCTCAGAGATCACTATTTGCTGGCAATACTTTGGCAATTCCATTCTTGAAATAACTCGGGGATAATTGGCATTTGTTCAGATCTCTGTCCAGGCATCTATCATCATGGGGCTGCAGGGTGCTGTTTCACAAACTGCACTACAGCCCGGACAACCATCGCGTGGTAAGTTCATTTGGCGCTCTTGATTTTTCTTGCAATGAGATAGCCTAACTTTGTGATACGCGATGACGCGGTCACATAGAAAGCATGTGAAGTGTAGGTAAACATATTCCTTTATCATAATATTAGGATGTACTGGCAGGTATATTGTCTAGTTGTGGTGCTGAAACGATACAAATTAGAACATACATAAACTATTTACACTATACTATTGTCTGATCGAATAAAGCACAAACCAAACAAATATGCATCACTTTTTTAATTTTTTAGACCTTTTTAAATCAATAGTTTATTAATAGACCTTACAAAATTTTATTTCTAAGGGCCTGTTTAGTATCTTCACTCCTTCCGTTGGGTTGGAATTTGCCGACATTTTCTATTTCAGGGTACATACTATCTCCATTTTTTAAATAGATGACACCATTGATTTTTAATCAATATTTGATCATTTATCTTATTTAAAAATTTAGTGTAAATATGCTAAAGTATAACTCATACTTGAATTAAATTTCTTTGATAATAAAGCATATCACAACAAAATAAATTAAATTTATTTATTTATTTTAAAATAAGATAAATAGTCAAACGTCATATTTAAAGTCAACGGTATCATCTATTTAAAAAATAGAGGCAGTACATTTCAATTTCAAATCTGCACTGTCTCCACAATAATGAAGTACGATCCAAATTATGAAATTCCCATGTGTTAGTGTTAGCATCAGTCCACCATGAGATCACTCTATGCTTGGCAATTCCATTGCAGAAATAGCTGGGTGATACTGTAACGCTGATGTACTTGACTATCTTTTCTTTTTTTTTCAGATGTCCGTCCAACAGTAGAGAGCTGGTATTTCGCAAACAACAAACTGCATTAGAAATGTGAAGTTGTGTGATTTAAATCCTTAGCAAAGGTCTTACATCTTCTTACTACACATTTTTTTAATGTCCCGGGCTTATATTTGGTTGAACTGTTGAAGGTGCATGCATTACTCCACTTGGCTTCAGAAAAGTGAACACATACAGTTATCACATTGACGTTGCCAACATATATCTGATGATAATTAAACAATTATCAATTATCAATT
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| CDS seq | GAGCGAATTATGAACTTAACTTCGTTCCCATCACCGCAGGTGCTGCAGCGCTTGACGATGCTTAAAAGATTATATATCCGTTCTTGCTGGTGCCTCAGATCATTGGGTGGCTTACGAGAGGCAACCTCCCTTTCAGAAGTTAAGATAGATTCATGCATCTCATTAGAGTTGGTGGATGAAAATGGAATAGCTGTTATGCCATCCTCTATTGGAAAGCTCTCTCTATTTGGCTGCATACTAGGGGCCAATTTCCTCAGTACTGACTTCCCACGTCTGCGTAGCATTTCCATCACATGCTGCCGAAGCTCTTCATCATTTGCTATTGGTCATCTGCGTTCCCTGGAATCACTCTCACTGAATAACATGCCAGACTTGTGCTTTCTTGAAGGCTTATCATGTCCACATCTCCAGGACATACATCTGATAAATGTTCCAAATCTTACCGCAGAGTCTTTTTCCCGGCATCATGCATGGAAATCACTCGCTATTAGTAGCTCTGCTATGCTCAGTCTCATGCTCTCTATAAAGGATTTCATGCTCCCAGAGAAACTCTGTTTTGAACAATACGACGAGCCATCCATTACATTTCAAAGCTCTGCAAATTTCACATCTATCAAGTTTCTAGAGTTCAGGGATTCTAAAGTCATGTACCTGCCAAGCAGTTTGAAGAACCTGTCCAGTCTGGAGAGGATCAAATTTGTCAGGATCCCCAACTTATCATCTCTACCAGATTTCCCTAATTCTATCCAGCAAATTGAAATACAAGACTGCGAGTGCTTGAAAAGAAGCTGCCAGGCACCTAATGGAGAAAACTGGCAAAAGATTGAGTGCATCCGTTGGAAGCTTATCGAAGTTTCCAAACCTGATGAAAGTATAGCGTGGTTCATACACAGGTATGATAAAGTTGGAATAGCTGCCTACCCTAAGAAGCTACAGCCTGGACAACCTGTGGTCTGGCACGACAAGAATCACTGA
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| Protein seq | ERIMNLTSFPSPQVLQRLTMLKRLYIRSCWCLRSLGGLREATSLSEVKIDSCISLELVDENGIAVMPSSIGKLSLFGCILGANFLSTDFPRLRSISITCCRSSSSFAIGHLRSLESLSLNNMPDLCFLEGLSCPHLQDIHLINVPNLTAESFSRHHAWKSLAISSSAMLSLMLSIKDFMLPEKLCFEQYDEPSITFQSSANFTSIKFLEFRDSKVMYLPSSLKNLSSLERIKFVRIPNLSSLPDFPNSIQQIEIQDCECLKRSCQAPNGENWQKIECIRWKLIEVSKPDESIAWFIHRYDKVGIAAYPKKLQPGQPVVWHDKNH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0245800 | OsNip_11t0245800-01 | Chr11 | 7860100 | 7864643 | + | RAP2018-11-26 | ||
| CDS seq | GAGCGAATTATGAACTTAACTTCGTTCCCATCACCGCAGGTGCTGCAGCGCTTGACGATGCTTAAAAGATTATATATCCGTTCTTGCTGGTGCCTCAGATCATTGGGTGGCTTACGAGAGGCAACCTCCCTTTCAGAAGTTAAGATAGATTCATGCATCTCATTAGAGTTGGTGGATGAAAATGGAATAGCTGTTATGCCATCCTCTATTGGAAAGCTCTCTCTATTTGGCTGCATACTAGGGGCCAATTTCCTCAGTACTGACTTCCCACGTCTGCGTAGCATTTCCATCACATGCTGCCGAAGCTCTTCATCATTTGCTATTGGTCATCTGCGTTCCCTGGAATCACTCTCACTGAATAACATGCCAGACTTGTGCTTTCTTGAAGGCTTATCATGTCCACATCTCCAGGACATACATCTGATAAATGTTCCAAATCTTACCGCAGAGTCTTTTTCCCGGCATCATGCATGGAAATCACTCGCTATTAGTAGCTCTGCTATGCTCAGTCTCATGCTCTCTATAAAGGATTTCATGCTCCCAGAGAAACTCTGTTTTGAACAATACGACGAGCCATCCATTACATTTCAAAGCTCTGCAAATTTCACATCTATCAAGTTTCTAGAGTTCAGGGATTCTAAAGTCATGTACCTGCCAAGCAGTTTGAAGAACCTGTCCAGTCTGGAGAGGATCAAATTTGTCAGGATCCCCAACTTATCATCTCTACCAGATTTCCCTAATTCTATCCAGCAAATTGAAATACAAGACTGCGAGTGCTTGAAAAGAAGCTGCCAGGCACCTAATGGAGAAAACTGGCAAAAGATTGAGTGCATCCGTTGGAAGCTTATCGAAGTTTCCAAACCTGATGAAAGTATAGCGTGGTTCATACACAGGTATGATAAAGTTGGAATAGCTGCCTACCCTAAGAAGCTACAGCCTGGACAACCTGTGGTCTGGCACGACAAGAATCACTGA
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| Protein seq | ERIMNLTSFPSPQVLQRLTMLKRLYIRSCWCLRSLGGLREATSLSEVKIDSCISLELVDENGIAVMPSSIGKLSLFGCILGANFLSTDFPRLRSISITCCRSSSSFAIGHLRSLESLSLNNMPDLCFLEGLSCPHLQDIHLINVPNLTAESFSRHHAWKSLAISSSAMLSLMLSIKDFMLPEKLCFEQYDEPSITFQSSANFTSIKFLEFRDSKVMYLPSSLKNLSSLERIKFVRIPNLSSLPDFPNSIQQIEIQDCECLKRSCQAPNGENWQKIECIRWKLIEVSKPDESIAWFIHRYDKVGIAAYPKKLQPGQPVVWHDKNH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.869514 | 0.961491 | 0.321152 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g14110 | RBH | 0.588011 | 0.646683 | 0.082671 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0245800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008930 | RBH | 0.307674 | 4.862824 | 3.876990 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008820 | RBH | 0.243678 | 1.587239 | 1.640405 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008830 | RBH | 0.523620 | 1.979363 | 0.271127 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008670 | RBH | 0.060726 | 0.116506 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008750 | RBH | 2.008323 | 1.685957 | 2.650652 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0119000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0008780 | RBH | 0.113832 | 0.126757 | 0.352456 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0123100 | RBH | 2.261159 | 13.5600755 | 7.484368 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008840 | RBH | 0.021630 | 0.126688 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008930 | RBH | 0.100594 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008840 | RBH | 1.968439 | 11.866999 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0008720 | RBH | 0.204565 | 0.0 | 0.068740 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008860 | RBH | 0.024664 | 0.578388 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008880 | RBH | 0.187204 | 0.689978 | 0.599998 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008770 | RBH | 0.448215 | 13.690619 | 2.578554 |
