Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0002220 | OGI:11005350 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:1574534-1577293 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACCTACCATCACCGGCACGGCCATGAGCACTAGCTGTAGCGGTGCCCTTCGCGCAGCCACCACCAAAGCGCTGCTACTCCTCGTCGTCGCCGTCTTCGTAGTCTCGCTCTCGCGTCCATTTCCGTGCGCGGCGGCGGCGCGCGACAGTCTACTCCGGGGCGCCTCCATCGCCGTCGAGGACCACGCCACCGACGTCCTGCTCTCCCCGGACGGCACCTTCGCCTGCGGCTTCTACGTCGTCTCGCCCACCGTCTTCACCTTCTCCGTCTGGTTCGCGCGCGCCGCCGACCGCGCCGTCGTCTGGTCCGCCAACCGCGGCCGCCCCGTCCACAGCAAGCGCTCCCGTCTCAAACTCAACGGCCGCCGCCGCGCGCTCGTCCTCACCGACTACGACGGCGAGGTGGTCTGGAACTCCACCGTCAGCGCCAACGCCACCGCCACCGCCACAGCTGCGCGCGCTCGGCTGCACGATTCCGGCAACCTCGCCGTCGAGGACGCGAGCGGGAACGTCCTATGGCAGAGCTTCGACCACCCCACCGACACACTACTGCCTACGCAGCGCATCGCCGCCGGCGAGGCGATGGTCTCGGCAGACAAGCTCCTCGCCGCGGGCTTCTACAGCTTCCGCTTCAGCGACTACGCCATGCTGTCGCTGGTGTACGACAACCATGAGATGTCCAGCATCTACTGGCCCAACCCCTACTACAGCTACTGGCAGAACAGTCGCAAGATCTACAACTTCACCCGGGAAGCTTTCTTCGACGCCTCTGGCCATTTCTCGTCCAGCGACAACGCCACCTTCGACGCCTCCGATCTGGCCAAGAATGTCGCCGTTAGGAGGAGGCTGACGCTGGACACAGATGGTAACCTCAGGCTGTACAGCCTTGACGAGGTCACCGGGACATGGTCGGTGTCGTGGATGGCGTTCAGCAACCCGTGCATCATCCACGGTGTGTGCGGCGCCAACGCCGTGTGCCTCTACTCGCCGGCGCCGGTGTGCGTCTGCGCGCCAGGGTACGGGCGCGCCGAACCGAGCGACTGGAGCAGAGGCTGCCGGCCGACGTTCAACTCCAGTGACGACGGCGGCCAGCCGCGGGCGATGAAGATGGTGCCGCTGCCGCACACCGACTTCTGGGGCTTCGACATCAACAGCAGCGAGAACCTGTCGCTGGACGAGTGCTCGACACGGTGCATGAGCGAGCCGTCGTGCGTGGTTTTCCAGTACAAGCAGGGCAAAGGTGAGTGCTACCCAAAAAGCCTCATGTTCAATGGCAGAACGTTCCCCGGCCTGCCTGGGACGGCCTATCTCAAGGTCCCGGCTGATCTTGACATGCTAGAAATACACATCCACCAATGGCAAGCAGACAGCGATGGTCACGGCATTGCCGCCATTCAGGAAGACATCGTCGGATGCGGTGGCATGAGCTCACCGGAGTTCTTGCTCAATGTCTCGAATGCGTCATCGAGCAAAAGTAATCAGGGCAAGTCGATATGGTTCTACTTCTACGGATTTCTGACTGCATTTTTTGTCATTGAAGTGTTTGTGATAGCATTCGGTTGCTGGCTCTTTTCCAACAAGGGAGTTTTTAAGCCATGTCAGGTTTCAGCACTAGATGAAGGGTACAGGATGGTTACCAACCATTTTCGCACATATAGCTACGCAGAGCTACAGAAGGGAACTAGAAAGTTTCAGAGTGAGATCGGCCGTGGTGGGTCAGGTGTTGTGTACAAAGGAGTTCTAGATGATGAGAGGACGGTGGCCGTCAAGGTGCTACAAGATGTGAAGCAAAGTGAGGATGTGTTCCAGGCTGAGTTGAGTGTTATTGGTAGAATTTATCATATGAATCTTGTTAGAATGTGGGGTTTTTGCTTAGAAGGAATACATAGGATTTTAGTCTATGAATACATTGAGAATGGATCATTGGCCAAAGTACTATTTCAAGGGAGGAATTCCGGTATGTTTCTTGGATGGAAGCAAAGGTTCAACATTGTTCTAGGTGTTGCCAAGGGGCTAGCATATCTTCACAATGAGTGCCTTGAGTGGATCATCCATTGCGACATGAAGCCGGAGAACATACTATTAGATGAAGATATGGAGCCTAAGATCACTGACTTTGGCTTGTCCAAGTTGTTGAATAGAGACGGGTCTGGTCCTGACATGTCACGGATTCGGGGGACAAGAGGATATATGGCTCCTGAGTGGGTTTCTAGCCTTCCAATCACAGAGAAAGTTGATGTGTACAGTTACGGAGTGGTGCTTCTTGAACTGGTGAAAGGGATGAGGATTTTAGACTGGGTGTTGGATGGGAAAGAGGGACTAGAAGCCGACGTGAGAAGTGTGGTTAAGATGGTTGTCAGCAAACTTGAGAGCAACATGGAATCCTGGGTTGCGGATTTGATGGATGATCGGTTGCATGGTGAATTTAATCATTTGCAGGCTAGGCTACTAATGCAATTGGCCGTTTCATGCTTGGAAGAAGATAAAAACAAAAGGCCAACCATGAAGTACATAGTACAAATGCTCATTTCCGCTGAAGATGAAGCTCATGCCTTCACCTAATTCTGATGGTTCTAACACAAGTATTTGAGATTTAATATGAAGTTCACTCTTTATCTATTTCACCCTTTCTGTAAAAATTATGCAAATTCATTAGCACTCTACTTTATTAGTTGGAAGATTGTAAGAGAGTGCAGGTTCTTAAGGACAACTTGATAAACATCAGTATAGTACTGAAATTATGCTAGCAAATGATTAAAACT
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| CDS seq | ATGAGCACTAGCTGTAGCGGTGCCCTTCGCGCAGCCACCACCAAAGCGCTGCTACTCCTCGTCGTCGCCGTCTTCGTAGTCTCGCTCTCGCGTCCATTTCCGTGCGCGGCGGCGGCGCGCGACAGTCTACTCCGGGGCGCCTCCATCGCCGTCGAGGACCACGCCACCGACGTCCTGCTCTCCCCGGACGGCACCTTCGCCTGCGGCTTCTACGTCGTCTCGCCCACCGTCTTCACCTTCTCCGTCTGGTTCGCGCGCGCCGCCGACCGCGCCGTCGTCTGGTCCGCCAACCGCGGCCGCCCCGTCCACAGCAAGCGCTCCCGTCTCAAACTCAACGGCCGCCGCCGCGCGCTCGTCCTCACCGACTACGACGGCGAGGTGGTCTGGAACTCCACCGTCAGCGCCAACGCCACCGCCACCGCCACAGCTGCGCGCGCTCGGCTGCACGATTCCGGCAACCTCGCCGTCGAGGACGCGAGCGGGAACGTCCTATGGCAGAGCTTCGACCACCCCACCGACACACTACTGCCTACGCAGCGCATCGCCGCCGGCGAGGCGATGGTCTCGGCAGACAAGCTCCTCGCCGCGGGCTTCTACAGCTTCCGCTTCAGCGACTACGCCATGCTGTCGCTGGTGTACGACAACCATGAGATGTCCAGCATCTACTGGCCCAACCCCTACTACAGCTACTGGCAGAACAGTCGCAAGATCTACAACTTCACCCGGGAAGCTTTCTTCGACGCCTCTGGCCATTTCTCGTCCAGCGACAACGCCACCTTCGACGCCTCCGATCTGGCCAAGAATGTCGCCGTTAGGAGGAGGCTGACGCTGGACACAGATGGTAACCTCAGGCTGTACAGCCTTGACGAGGTCACCGGGACATGGTCGGTGTCGTGGATGGCGTTCAGCAACCCGTGCATCATCCACGGTGTGTGCGGCGCCAACGCCGTGTGCCTCTACTCGCCGGCGCCGGTGTGCGTCTGCGCGCCAGGGTACGGGCGCGCCGAACCGAGCGACTGGAGCAGAGGCTGCCGGCCGACGTTCAACTCCAGTGACGACGGCGGCCAGCCGCGGGCGATGAAGATGGTGCCGCTGCCGCACACCGACTTCTGGGGCTTCGACATCAACAGCAGCGAGAACCTGTCGCTGGACGAGTGCTCGACACGGTGCATGAGCGAGCCGTCGTGCGTGGTTTTCCAGTACAAGCAGGGCAAAGGTGAGTGCTACCCAAAAAGCCTCATGTTCAATGGCAGAACGTTCCCCGGCCTGCCTGGGACGGCCTATCTCAAGGTCCCGGCTGATCTTGACATGCTAGAAATACACATCCACCAATGGCAAGCAGACAGCGATGGTCACGGCATTGCCGCCATTCAGGAAGACATCGTCGGATGCGGTGGCATGAGCTCACCGGAGTTCTTGCTCAATGTCTCGAATGCGTCATCGAGCAAAAGTAATCAGGGCAAGTCGATATGGTTCTACTTCTACGGATTTCTGACTGCATTTTTTGTCATTGAAGTGTTTGTGATAGCATTCGGTTGCTGGCTCTTTTCCAACAAGGGAGTTTTTAAGCCATGTCAGGTTTCAGCACTAGATGAAGGGTACAGGATGGTTACCAACCATTTTCGCACATATAGCTACGCAGAGCTACAGAAGGGAACTAGAAAGTTTCAGAGTGAGATCGGCCGTGGTGGGTCAGGTGTTGTGTACAAAGGAGTTCTAGATGATGAGAGGACGGTGGCCGTCAAGGTGCTACAAGATGTGAAGCAAAGTGAGGATGTGTTCCAGGCTGAGTTGAGTGTTATTGGTAGAATTTATCATATGAATCTTGTTAGAATGTGGGGTTTTTGCTTAGAAGGAATACATAGGATTTTAGTCTATGAATACATTGAGAATGGATCATTGGCCAAAGTACTATTTCAAGGGAGGAATTCCGGTATGTTTCTTGGATGGAAGCAAAGGTTCAACATTGTTCTAGGTGTTGCCAAGGGGCTAGCATATCTTCACAATGAGTGCCTTGAGTGGATCATCCATTGCGACATGAAGCCGGAGAACATACTATTAGATGAAGATATGGAGCCTAAGATCACTGACTTTGGCTTGTCCAAGTTGTTGAATAGAGACGGGTCTGGTCCTGACATGTCACGGATTCGGGGGACAAGAGGATATATGGCTCCTGAGTGGGTTTCTAGCCTTCCAATCACAGAGAAAGTTGATGTGTACAGTTACGGAGTGGTGCTTCTTGAACTGGTGAAAGGGATGAGGATTTTAGACTGGGTGTTGGATGGGAAAGAGGGACTAGAAGCCGACGTGAGAAGTGTGGTTAAGATGGTTGTCAGCAAACTTGAGAGCAACATGGAATCCTGGGTTGCGGATTTGATGGATGATCGGTTGCATGGTGAATTTAATCATTTGCAGGCTAGGCTACTAATGCAATTGGCCGTTTCATGCTTGGAAGAAGATAAAAACAAAAGGCCAACCATGAAGTACATAGTACAAATGCTCATTTCCGCTGAAGATGAAGCTCATGCCTTCACCTAA
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| Protein seq | MSTSCSGALRAATTKALLLLVVAVFVVSLSRPFPCAAAARDSLLRGASIAVEDHATDVLLSPDGTFACGFYVVSPTVFTFSVWFARAADRAVVWSANRGRPVHSKRSRLKLNGRRRALVLTDYDGEVVWNSTVSANATATATAARARLHDSGNLAVEDASGNVLWQSFDHPTDTLLPTQRIAAGEAMVSADKLLAAGFYSFRFSDYAMLSLVYDNHEMSSIYWPNPYYSYWQNSRKIYNFTREAFFDASGHFSSSDNATFDASDLAKNVAVRRRLTLDTDGNLRLYSLDEVTGTWSVSWMAFSNPCIIHGVCGANAVCLYSPAPVCVCAPGYGRAEPSDWSRGCRPTFNSSDDGGQPRAMKMVPLPHTDFWGFDINSSENLSLDECSTRCMSEPSCVVFQYKQGKGECYPKSLMFNGRTFPGLPGTAYLKVPADLDMLEIHIHQWQADSDGHGIAAIQEDIVGCGGMSSPEFLLNVSNASSSKSNQGKSIWFYFYGFLTAFFVIEVFVIAFGCWLFSNKGVFKPCQVSALDEGYRMVTNHFRTYSYAELQKGTRKFQSEIGRGGSGVVYKGVLDDERTVAVKVLQDVKQSEDVFQAELSVIGRIYHMNLVRMWGFCLEGIHRILVYEYIENGSLAKVLFQGRNSGMFLGWKQRFNIVLGVAKGLAYLHNECLEWIIHCDMKPENILLDEDMEPKITDFGLSKLLNRDGSGPDMSRIRGTRGYMAPEWVSSLPITEKVDVYSYGVVLLELVKGMRILDWVLDGKEGLEADVRSVVKMVVSKLESNMESWVADLMDDRLHGEFNHLQARLLMQLAVSCLEEDKNKRPTMKYIVQMLISAEDEAHAFT |
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| Function | Putative receptor protein kinase ZmPK1 [UniProtKB/Swiss-Prot:P17801] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0002220 | OsCMeo_11g0002220.01 | Chr11 | 1574534 | 1577293 | + | NAM | ||
| CDS seq | ATGAGCACTAGCTGTAGCGGTGCCCTTCGCGCAGCCACCACCAAAGCGCTGCTACTCCTCGTCGTCGCCGTCTTCGTAGTCTCGCTCTCGCGTCCATTTCCGTGCGCGGCGGCGGCGCGCGACAGTCTACTCCGGGGCGCCTCCATCGCCGTCGAGGACCACGCCACCGACGTCCTGCTCTCCCCGGACGGCACCTTCGCCTGCGGCTTCTACGTCGTCTCGCCCACCGTCTTCACCTTCTCCGTCTGGTTCGCGCGCGCCGCCGACCGCGCCGTCGTCTGGTCCGCCAACCGCGGCCGCCCCGTCCACAGCAAGCGCTCCCGTCTCAAACTCAACGGCCGCCGCCGCGCGCTCGTCCTCACCGACTACGACGGCGAGGTGGTCTGGAACTCCACCGTCAGCGCCAACGCCACCGCCACCGCCACAGCTGCGCGCGCTCGGCTGCACGATTCCGGCAACCTCGCCGTCGAGGACGCGAGCGGGAACGTCCTATGGCAGAGCTTCGACCACCCCACCGACACACTACTGCCTACGCAGCGCATCGCCGCCGGCGAGGCGATGGTCTCGGCAGACAAGCTCCTCGCCGCGGGCTTCTACAGCTTCCGCTTCAGCGACTACGCCATGCTGTCGCTGGTGTACGACAACCATGAGATGTCCAGCATCTACTGGCCCAACCCCTACTACAGCTACTGGCAGAACAGTCGCAAGATCTACAACTTCACCCGGGAAGCTTTCTTCGACGCCTCTGGCCATTTCTCGTCCAGCGACAACGCCACCTTCGACGCCTCCGATCTGGCCAAGAATGTCGCCGTTAGGAGGAGGCTGACGCTGGACACAGATGGTAACCTCAGGCTGTACAGCCTTGACGAGGTCACCGGGACATGGTCGGTGTCGTGGATGGCGTTCAGCAACCCGTGCATCATCCACGGTGTGTGCGGCGCCAACGCCGTGTGCCTCTACTCGCCGGCGCCGGTGTGCGTCTGCGCGCCAGGGTACGGGCGCGCCGAACCGAGCGACTGGAGCAGAGGCTGCCGGCCGACGTTCAACTCCAGTGACGACGGCGGCCAGCCGCGGGCGATGAAGATGGTGCCGCTGCCGCACACCGACTTCTGGGGCTTCGACATCAACAGCAGCGAGAACCTGTCGCTGGACGAGTGCTCGACACGGTGCATGAGCGAGCCGTCGTGCGTGGTTTTCCAGTACAAGCAGGGCAAAGGTGAGTGCTACCCAAAAAGCCTCATGTTCAATGGCAGAACGTTCCCCGGCCTGCCTGGGACGGCCTATCTCAAGGTCCCGGCTGATCTTGACATGCTAGAAATACACATCCACCAATGGCAAGCAGACAGCGATGGTCACGGCATTGCCGCCATTCAGGAAGACATCGTCGGATGCGGTGGCATGAGCTCACCGGAGTTCTTGCTCAATGTCTCGAATGCGTCATCGAGCAAAAGTAATCAGGGCAAGTCGATATGGTTCTACTTCTACGGATTTCTGACTGCATTTTTTGTCATTGAAGTGTTTGTGATAGCATTCGGTTGCTGGCTCTTTTCCAACAAGGGAGTTTTTAAGCCATGTCAGGTTTCAGCACTAGATGAAGGGTACAGGATGGTTACCAACCATTTTCGCACATATAGCTACGCAGAGCTACAGAAGGGAACTAGAAAGTTTCAGAGTGAGATCGGCCGTGGTGGGTCAGGTGTTGTGTACAAAGGAGTTCTAGATGATGAGAGGACGGTGGCCGTCAAGGTGCTACAAGATGTGAAGCAAAGTGAGGATGTGTTCCAGGCTGAGTTGAGTGTTATTGGTAGAATTTATCATATGAATCTTGTTAGAATGTGGGGTTTTTGCTTAGAAGGAATACATAGGATTTTAGTCTATGAATACATTGAGAATGGATCATTGGCCAAAGTACTATTTCAAGGGAGGAATTCCGGTATGTTTCTTGGATGGAAGCAAAGGTTCAACATTGTTCTAGGTGTTGCCAAGGGGCTAGCATATCTTCACAATGAGTGCCTTGAGTGGATCATCCATTGCGACATGAAGCCGGAGAACATACTATTAGATGAAGATATGGAGCCTAAGATCACTGACTTTGGCTTGTCCAAGTTGTTGAATAGAGACGGGTCTGGTCCTGACATGTCACGGATTCGGGGGACAAGAGGATATATGGCTCCTGAGTGGGTTTCTAGCCTTCCAATCACAGAGAAAGTTGATGTGTACAGTTACGGAGTGGTGCTTCTTGAACTGGTGAAAGGGATGAGGATTTTAGACTGGGTGTTGGATGGGAAAGAGGGACTAGAAGCCGACGTGAGAAGTGTGGTTAAGATGGTTGTCAGCAAACTTGAGAGCAACATGGAATCCTGGGTTGCGGATTTGATGGATGATCGGTTGCATGGTGAATTTAATCATTTGCAGGCTAGGCTACTAATGCAATTGGCCGTTTCATGCTTGGAAGAAGATAAAAACAAAAGGCCAACCATGAAGTACATAGTACAAATGCTCATTTCCGCTGAAGATGAAGCTCATGCCTTCACCTAA
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| Protein seq | MSTSCSGALRAATTKALLLLVVAVFVVSLSRPFPCAAAARDSLLRGASIAVEDHATDVLLSPDGTFACGFYVVSPTVFTFSVWFARAADRAVVWSANRGRPVHSKRSRLKLNGRRRALVLTDYDGEVVWNSTVSANATATATAARARLHDSGNLAVEDASGNVLWQSFDHPTDTLLPTQRIAAGEAMVSADKLLAAGFYSFRFSDYAMLSLVYDNHEMSSIYWPNPYYSYWQNSRKIYNFTREAFFDASGHFSSSDNATFDASDLAKNVAVRRRLTLDTDGNLRLYSLDEVTGTWSVSWMAFSNPCIIHGVCGANAVCLYSPAPVCVCAPGYGRAEPSDWSRGCRPTFNSSDDGGQPRAMKMVPLPHTDFWGFDINSSENLSLDECSTRCMSEPSCVVFQYKQGKGECYPKSLMFNGRTFPGLPGTAYLKVPADLDMLEIHIHQWQADSDGHGIAAIQEDIVGCGGMSSPEFLLNVSNASSSKSNQGKSIWFYFYGFLTAFFVIEVFVIAFGCWLFSNKGVFKPCQVSALDEGYRMVTNHFRTYSYAELQKGTRKFQSEIGRGGSGVVYKGVLDDERTVAVKVLQDVKQSEDVFQAELSVIGRIYHMNLVRMWGFCLEGIHRILVYEYIENGSLAKVLFQGRNSGMFLGWKQRFNIVLGVAKGLAYLHNECLEWIIHCDMKPENILLDEDMEPKITDFGLSKLLNRDGSGPDMSRIRGTRGYMAPEWVSSLPITEKVDVYSYGVVLLELVKGMRILDWVLDGKEGLEADVRSVVKMVVSKLESNMESWVADLMDDRLHGEFNHLQARLLMQLAVSCLEEDKNKRPTMKYIVQMLISAEDEAHAFT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.615555 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0133300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g03860 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0133300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002200 | RBH | 0.0 | 6.652266 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002230 | RBH | 0.0 | 0.777989 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002230 | RBH | 0.0 | 0.887879 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0002180 | SBH | 0.0 | 0.040205 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0002160 | RBH | 0.0 | 1.251118 | 0.409694 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0031200 | RBH | 0.0144205 | 2.8781085 | 0.23161 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0002190 | RBH | 0.0 | 0.058115 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0030000 | RBH | 0.011841 | 2.1662245 | 0.1430115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002090 | RBH | 0.0 | 0.044025 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002240 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002230 | RBH | 0.0 | 4.575551 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002170 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002240 | RBH | 0.0 | 0.502415 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002170 | RBH | 0.0 | 1.601680 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002150 | RBH | 0.0 | 5.397079 | 0.0 |
