Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsCMeo_10g0005910 | OGI:04014620 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr10:8422469-8423662 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ATGGATAATGGTAGGACCATGATCATCACCAGTTCAGAATTTACTCCTGAAGACGCAGCAAGGATACCCAAGCGTCAGAGAGGAAGAAATACCTTCCGTGGAGCACGCCAGCTAACCCGACATCTCATAAAGTACGGTCCGCCCAGACCCGAAGATGATATATCAGGAGAACGGTTCTCTACTGATGACGACGATGATGATGATGATGATGATGATGATGATGATGATGAGGATGAGGCGACCCTTAACAGTTTCATGGAAAGAGGATTGGAGTTCAAAGCATGTACTAGATGTGGGATAGTCGAACACACTGCTAGTTTATGCCTCCCCACATGCCGCTGTGGTGAATACACCCATTACTCAGATGAATGCCCTTTGAGGAAGGTCACATGTTTCCTGTGTGAGGGAACAGATCATGTGCCTAAGGATTGTCAGCGGAACTCGGTCCTAGCTTTGACCAAGAAAGAACAAGGGACAACCGTGCAACCCATTCGTCAACCAATGGCAGTCGACGACATCAGTCACAATCCTTCTGCTCTTCCTCCAATTCCAGCCCCAGTGGAAGCCAACCATGGAAGAAGCAACGTCGCTAGGGATGTTCATAAATCACTACTTGTTCCAGTTTCAGCTGTCAATGTGCATAACCAGAAGCTTGCACCTCAGGACCAAGCAAGTCGGTTTTGTCTCAATTGTCGTAAGCCAGGACATTGTTTCAGTGATTGTCCTCTTCCAAGAGCAGCAAAGGCAGTTCATCGTGATTCATAAGTTACCAGCACTGCCCACGACACCAATCGACACCTGAATGTGCAACCTCCGCCTCAACGGATTATCGTCAAGGGCACCGTCAGAGGCCGCATTGTTCCACCGGCCATCGTTTCAAGCCTACAGCACCAGCGCCAGCAGGGTAAGCAATGCCAGGAGAACAACAGCTCGCTACAGCTACAAAGAGGCAGTACGCTCCTTCGTCAGCACCCGCAGCAAGTGTTGTCAGCACCAGGTCAACCCACTGCTGTCAATTCTAGCAATGCACCTTGTATTGCTCCAATCCGGAGGCCCATCTGTAAATCACCGCTCGGTAATCCCATGAGCAAGAAGATCCCATCTGCCATAGCTGTCAAGAGGATTGCCATTCCCTCCCTGAAGATCAATGCCCAGAGCAATGTTTCTGATGCAACTTCTGGTAGTAGGAACTAA
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CDS seq | ATGGATAATGGTAGGACCATGATCATCACCAGTTCAGAATTTACTCCTGAAGACGCAGCAAGGATACCCAAGCGTCAGAGAGGAAGAAATACCTTCCGTGGAGCACGCCAGCTAACCCGACATCTCATAAAGTACGGTCCGCCCAGACCCGAAGATGATATATCAGGAGAACGGTTCTCTACTGATGACGACGATGATGATGATGATGATGATGATGATGATGATGATGAGGATGAGGCGACCCTTAACAGTTTCATGGAAAGAGGATTGGAGTTCAAAGCATGTACTAGATGTGGGATAGTCGAACACACTGCTAGTTTATGCCTCCCCACATGCCGCTGTGGTGAATACACCCATTACTCAGATGAATGCCCTTTGAGGAAGGTCACATGTTTCCTGTGTGAGGGAACAGATCATGTGCCTAAGGATTGTCAGCGGAACTCGGTCCTAGCTTTGACCAAGAAAGAACAAGGGACAACCGTGCAACCCATTCGTCAACCAATGGCAGTCGACGACATCAGTCACAATCCTTCTGCTCTTCCTCCAATTCCAGCCCCAGTGGAAGCCAACCATGGAAGAAGCAACGTCGCTAGGGATGTTCATAAATCACTACTTGTTCCAGTTTCAGCTGTCAATGTGCATAACCAGAAGCTTGCACCTCAGGACCAAGCAAGTCGGTTTTGTCTCAATTGTCTTACCAGCACTGCCCACGACACCAATCGACACCTGAATGTGCAACCTCCGCCTCAACGGATTATCGTCAAGGGCACCGTCAGAGGCCGCATTGTTCCACCGGCCATCGTTTCAAGCCTACAGCACCAGCGCCAGCAGGGTAAGCAATGCCAGGAGAACAACAGCTCGCTACAGCTACAAAGAGGCAGTACGCTCCTTCGTCAGCACCCGCAGCAAGTGTTGTCAGCACCAGGTCAACCCACTGCTGTCAATTCTAGCAATGCACCTTGTATTGCTCCAATCCGGAGGCCCATCTGTAAATCACCGCTCGGTAATCCCATGAGCAAGAAGATCCCATCTGCCATAGCTGTCAAGAGGATTGCCATTCCCTCCCTGAAGATCAATGCCCAGAGCAATGTTTCTGATGCAACTTCTGGTAGTAGGAACTAA
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Protein seq | MDNGRTMIITSSEFTPEDAARIPKRQRGRNTFRGARQLTRHLIKYGPPRPEDDISGERFSTDDDDDDDDDDDDDDDEDEATLNSFMERGLEFKACTRCGIVEHTASLCLPTCRCGEYTHYSDECPLRKVTCFLCEGTDHVPKDCQRNSVLALTKKEQGTTVQPIRQPMAVDDISHNPSALPPIPAPVEANHGRSNVARDVHKSLLVPVSAVNVHNQKLAPQDQASRFCLNCLTSTAHDTNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGSTLLRQHPQQVLSAPGQPTAVNSSNAPCIAPIRRPICKSPLGNPMSKKIPSAIAVKRIAIPSLKINAQSNVSDATSGSRN |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsCMeo_10g0005910 | OsCMeo_10g0005910.01 | Chr10 | 8422469 | 8423662 | + | NAM | ||
CDS seq | ATGGATAATGGTAGGACCATGATCATCACCAGTTCAGAATTTACTCCTGAAGACGCAGCAAGGATACCCAAGCGTCAGAGAGGAAGAAATACCTTCCGTGGAGCACGCCAGCTAACCCGACATCTCATAAAGTACGGTCCGCCCAGACCCGAAGATGATATATCAGGAGAACGGTTCTCTACTGATGACGACGATGATGATGATGATGATGATGATGATGATGATGATGAGGATGAGGCGACCCTTAACAGTTTCATGGAAAGAGGATTGGAGTTCAAAGCATGTACTAGATGTGGGATAGTCGAACACACTGCTAGTTTATGCCTCCCCACATGCCGCTGTGGTGAATACACCCATTACTCAGATGAATGCCCTTTGAGGAAGGTCACATGTTTCCTGTGTGAGGGAACAGATCATGTGCCTAAGGATTGTCAGCGGAACTCGGTCCTAGCTTTGACCAAGAAAGAACAAGGGACAACCGTGCAACCCATTCGTCAACCAATGGCAGTCGACGACATCAGTCACAATCCTTCTGCTCTTCCTCCAATTCCAGCCCCAGTGGAAGCCAACCATGGAAGAAGCAACGTCGCTAGGGATGTTCATAAATCACTACTTGTTCCAGTTTCAGCTGTCAATGTGCATAACCAGAAGCTTGCACCTCAGGACCAAGCAAGTCGGTTTTGTCTCAATTGTCTTACCAGCACTGCCCACGACACCAATCGACACCTGAATGTGCAACCTCCGCCTCAACGGATTATCGTCAAGGGCACCGTCAGAGGCCGCATTGTTCCACCGGCCATCGTTTCAAGCCTACAGCACCAGCGCCAGCAGGGTAAGCAATGCCAGGAGAACAACAGCTCGCTACAGCTACAAAGAGGCAGTACGCTCCTTCGTCAGCACCCGCAGCAAGTGTTGTCAGCACCAGGTCAACCCACTGCTGTCAATTCTAGCAATGCACCTTGTATTGCTCCAATCCGGAGGCCCATCTGTAAATCACCGCTCGGTAATCCCATGAGCAAGAAGATCCCATCTGCCATAGCTGTCAAGAGGATTGCCATTCCCTCCCTGAAGATCAATGCCCAGAGCAATGTTTCTGATGCAACTTCTGGTAGTAGGAACTAA
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Protein seq | MDNGRTMIITSSEFTPEDAARIPKRQRGRNTFRGARQLTRHLIKYGPPRPEDDISGERFSTDDDDDDDDDDDDDDDEDEATLNSFMERGLEFKACTRCGIVEHTASLCLPTCRCGEYTHYSDECPLRKVTCFLCEGTDHVPKDCQRNSVLALTKKEQGTTVQPIRQPMAVDDISHNPSALPPIPAPVEANHGRSNVARDVHKSLLVPVSAVNVHNQKLAPQDQASRFCLNCLTSTAHDTNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGSTLLRQHPQQVLSAPGQPTAVNSSNAPCIAPIRRPICKSPLGNPMSKKIPSAIAVKRIAIPSLKINAQSNVSDATSGSRN
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | 0.0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g16520 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0013070 | SBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0005160 | SBH | 0.0 | 0.0 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0010360 | SBH | 0.0 | 0.0 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0002910 | SBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0004960 | SBH | 0.0 | 0.0 | 0.000000 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0188500 | RBH | 0 | 0 | 0 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0003080 | SBH | 0.0 | 0.0 | 0.160765 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0293700 | SBH | 0 | 0 | 0 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0002890 | SBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0000360 | SBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0002980 | SBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0068170 | SBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008250 | SBH | 0.0 | 0.585091 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G011410 | RBH | 0.000000 | 0.0 | 0.000000 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0006060 | RBH | 0.000000 | 0.000000 | 0.000000 |