Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g16520 | OGI:04014620 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:8235582-8237354 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTCTGCATGAGGGACAATTTCATCGGATCAGGATCCCGTCAGTTTCATGGATCAACTCAGCTCAATTCTATAAGCTTCCCACGTCAACCTCTCAAAGATCAGCCACAACCCCAAGTCATGGCTAATCAGACTCAGACAGTGGAAGAGTTGTTACAGCAGATGCGACATCGGTACCAGATCTATCTGATGCAGCAGATGCAACGGCAATGTCAGGAGCCGCGTCAAGTCCACCAGCCACAAATGCAAGTCCAGGTGCCAGCCCGGAACCTGAATCAGAGTCAGAGTCAGGAGTTCCCAACATCGGCACCGAAGACCCCTGTCAAAATGCGGTCCAGATACCCGAAGATAACGATAGCCAAGTCAACGTCAGACCAAAGGAAAGTAAGTGCTTCCTGTTATGACTGTGGTGAGCAAGATCATTATGTAAGGAACTGTCCATGGAAGGTGTTCGCCAGGTCACCTGAAAAATACAAGAAGCAGTGCCCAGGAAGTAACCAAGCTCCAAGTCAGTCTACCGACCAGAAGGATGGTACTTTGTAGCCCAACTCTGGAGCGAACAGGACAGTAAAATGGAAGATGGATAATGGTAGGACCATGATCATCACCAGTTCAGAATTTACTCCTGAAGACGCAGCAAGGATACCCAAGCGTCAGAGAGGAAGAAATACCTTCCGTGGAGCACGCCAGCTAACCCGACATCTCATAAAGTACGGTCCGCCCAGACCCGAAGATGATATATCAGGAGAACGGTTCTCTACTGATGACGACGATGATGATGATGATGATGATGATGATGATGATGATGAGGATGAGGCGACCCTTAACAGTTTCATGGAAAGAGGATTGGAGTTCAAAGCATGTACTAGATGTGGGATAGTCGAACACACTGCTAGTTTATGCCTCCCCACATGCCGCTGTGGTGAATACACCCATTACTCAGATGAATGCCCTTTGAGGAAGGTCACATGTTTCCTGTGTGAGGGAACAGATCATGTGCCTAAGGATTGTCAGCGGAACTCGGTCCTAGCTTTGACCAAGAAAGAACAAGGGACAACCGTGCAACCCATTCGTCAACCAATGGCAGTCGACGACATCAGTCACAATCCTTCTGCTCTTCCTCCAATTCCAGCCCCAGTGGAAGCCAACCATGGAAGAAGCAACGTCGCTAGGGATGTTCATAAATCACTACTTGTTCCAGTTTCAGCTGTCAATGTGCATAACCAGAAGCTTGCACCTCAGGACCAAGCAAGTCGGTTTTGTCTCAATTGTCGTAAGCCAGGACATTGTTTCAGTGATTGTCCTCTTCCAAGAGCAGCAAAGGCAGTTCATCGTGATTCATAAGTTACCAGCACTGCCCACGACACCAATCGACACCTGAATGTGCAACCTCCGCCTCAACGGATTATCGTCAAGGGCACCGTCAGAGGCCGCATTGTTCCACCGGCCATCGTTTCAAGCCTACAGCACCAGCGCCAGCAGGGTAAGCAATGCCAGGAGAACAACAGCTCGCTACAGCTACAAAGAGGCAGTACGCTCCTTCGTCAGCACCCGCAGCAAGTGTTGTCAGCACCAGGTCAACCCACTGCTGTCAATTCTAGCAATGCACCTTGTATTGCTCCAATCCGGAGGCCCATCTGTAAATCACCGCTCGGTAATCCCATGAGCAAGAAGATCCCATCTGCCATAGCTGTCAAGAGGATTGCCATTCCCTCCCTGAAGATCAATGCCCAGAGCAATGTTTCTGATGCAACTTCTGGTAGTAGGAACTAA
More
|
||||||||||
| CDS seq | ATGGTCTGCATGAGGGACAATTTCATCGGATCAGGATCCCGTCAGTTTCATGGATCAACTCAGCTCAATTCTATAAGCTTCCCACGTCAACCTCTCAAAGATCAGCCACAACCCCAAGTCATGGCTAATCAGACTCAGACAGTGGAAGAGTTGTTACAGCAGATGCGACATCGGTACCAGATCTATCTGATGCAGCAGATGCAACGGCAATGTCAGGAGCCGCGTCAAGTCCACCAGCCACAAATGCAAGTCCAGGTGCCAGCCCGGAACCTGAATCAGAGTCAGAGTCAGGAGTTCCCAACATCGGCACCGAAGACCCCTGTCAAAATGCGGTCCAGATACCCGAAGATAACGATAGCCAAGTCAACGTCAGACCAAAGGAAAGTAAGTGCTTCCTGTTATGACTGTGGTGAGCAAGATCATTATGTAAGGAACTGTCCATGGAAGGTGTTCGCCAGGTCACCTGAAAAATACAAGAAGCAGTGCCCAGGAAGTAACCAAGCTCCAAGTCAGTCTACCGACCAGAAGGATGAATTTACTCCTGAAGACGCAGCAAGGATACCCAAGCGTCAGAGAGGAAGAAATACCTTCCGTGGAGCACGCCAGCTAACCCGACATCTCATAAAGTACGGTCCGCCCAGACCCGAAGATGATATATCAGGAGAACGGTTCTCTACTGATGACGACGATGATGATGATGATGATGATGATGATGATGATGATGAGGATGAGGCGACCCTTAACAGTTTCATGGAAAGAGGATTGGAGTTCAAAGCATGTACTAGATGTGGGATAGTCGAACACACTGCTAGTTTATGCCTCCCCACATGCCGCTGTGGTGAATACACCCATTACTCAGATGAATGCCCTTTGAGGAAGGTCACATGTTTCCTGTGTGAGGGAACAGATCATGTGCCTAAGGATTGTCAGCGGAACTCGGTCCTAGCTTTGACCAAGAAAGAACAAGGGACAACCGTGCAACCCATTCGTCAACCAATGGCAGTCGACGACATCAGTCACAATCCTTCTGCTCTTCCTCCAATTCCAGCCCCAGTGGAAGCCAACCATGGAAGAAGCAACGTCGCTAGGGATGTTCATAAATCACTACTTGTTCCAGTTTCAGCTGTCAATGTGCATAACCAGAAGCTTGCACCTCAGGACCAAGCAAGTCGGTTTTGTCTCAATTGTCTTACCAGCACTGCCCACGACACCAATCGACACCTGAATGTGCAACCTCCGCCTCAACGGATTATCGTCAAGGGCACCGTCAGAGGCCGCATTGTTCCACCGGCCATCGTTTCAAGCCTACAGCACCAGCGCCAGCAGGGTAAGCAATGCCAGGAGAACAACAGCTCGCTACAGCTACAAAGAGGCAGTACGCTCCTTCGTCAGCACCCGCAGCAAGTGTTGTCAGCACCAGGTCAACCCACTGCTGTCAATTCTAGCAATGCACCTTGTATTGCTCCAATCCGGAGGCCCATCTGTAAATCACCGCTCGGTAATCCCATGAGCAAGAAGATCCCATCTGCCATAGCTGTCAAGAGGATTGCCATTCCCTCCCTGAAGATCAATGCCCAGAGCAATGTTTCTGATGCAACTTCTGGTAGTAGGAACTAA
More
|
||||||||||
| Protein seq | MVCMRDNFIGSGSRQFHGSTQLNSISFPRQPLKDQPQPQVMANQTQTVEELLQQMRHRYQIYLMQQMQRQCQEPRQVHQPQMQVQVPARNLNQSQSQEFPTSAPKTPVKMRSRYPKITIAKSTSDQRKVSASCYDCGEQDHYVRNCPWKVFARSPEKYKKQCPGSNQAPSQSTDQKDEFTPEDAARIPKRQRGRNTFRGARQLTRHLIKYGPPRPEDDISGERFSTDDDDDDDDDDDDDDDEDEATLNSFMERGLEFKACTRCGIVEHTASLCLPTCRCGEYTHYSDECPLRKVTCFLCEGTDHVPKDCQRNSVLALTKKEQGTTVQPIRQPMAVDDISHNPSALPPIPAPVEANHGRSNVARDVHKSLLVPVSAVNVHNQKLAPQDQASRFCLNCLTSTAHDTNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGSTLLRQHPQQVLSAPGQPTAVNSSNAPCIAPIRRPICKSPLGNPMSKKIPSAIAVKRIAIPSLKINAQSNVSDATSGSRN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g16520 | LOC_Os10g16520.1 | Chr10 | 8235582 | 8237354 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTCTGCATGAGGGACAATTTCATCGGATCAGGATCCCGTCAGTTTCATGGATCAACTCAGCTCAATTCTATAAGCTTCCCACGTCAACCTCTCAAAGATCAGCCACAACCCCAAGTCATGGCTAATCAGACTCAGACAGTGGAAGAGTTGTTACAGCAGATGCGACATCGGTACCAGATCTATCTGATGCAGCAGATGCAACGGCAATGTCAGGAGCCGCGTCAAGTCCACCAGCCACAAATGCAAGTCCAGGTGCCAGCCCGGAACCTGAATCAGAGTCAGAGTCAGGAGTTCCCAACATCGGCACCGAAGACCCCTGTCAAAATGCGGTCCAGATACCCGAAGATAACGATAGCCAAGTCAACGTCAGACCAAAGGAAAGTAAGTGCTTCCTGTTATGACTGTGGTGAGCAAGATCATTATGTAAGGAACTGTCCATGGAAGGTGTTCGCCAGGTCACCTGAAAAATACAAGAAGCAGTGCCCAGGAAGTAACCAAGCTCCAAGTCAGTCTACCGACCAGAAGGATGAATTTACTCCTGAAGACGCAGCAAGGATACCCAAGCGTCAGAGAGGAAGAAATACCTTCCGTGGAGCACGCCAGCTAACCCGACATCTCATAAAGTACGGTCCGCCCAGACCCGAAGATGATATATCAGGAGAACGGTTCTCTACTGATGACGACGATGATGATGATGATGATGATGATGATGATGATGATGAGGATGAGGCGACCCTTAACAGTTTCATGGAAAGAGGATTGGAGTTCAAAGCATGTACTAGATGTGGGATAGTCGAACACACTGCTAGTTTATGCCTCCCCACATGCCGCTGTGGTGAATACACCCATTACTCAGATGAATGCCCTTTGAGGAAGGTCACATGTTTCCTGTGTGAGGGAACAGATCATGTGCCTAAGGATTGTCAGCGGAACTCGGTCCTAGCTTTGACCAAGAAAGAACAAGGGACAACCGTGCAACCCATTCGTCAACCAATGGCAGTCGACGACATCAGTCACAATCCTTCTGCTCTTCCTCCAATTCCAGCCCCAGTGGAAGCCAACCATGGAAGAAGCAACGTCGCTAGGGATGTTCATAAATCACTACTTGTTCCAGTTTCAGCTGTCAATGTGCATAACCAGAAGCTTGCACCTCAGGACCAAGCAAGTCGGTTTTGTCTCAATTGTCTTACCAGCACTGCCCACGACACCAATCGACACCTGAATGTGCAACCTCCGCCTCAACGGATTATCGTCAAGGGCACCGTCAGAGGCCGCATTGTTCCACCGGCCATCGTTTCAAGCCTACAGCACCAGCGCCAGCAGGGTAAGCAATGCCAGGAGAACAACAGCTCGCTACAGCTACAAAGAGGCAGTACGCTCCTTCGTCAGCACCCGCAGCAAGTGTTGTCAGCACCAGGTCAACCCACTGCTGTCAATTCTAGCAATGCACCTTGTATTGCTCCAATCCGGAGGCCCATCTGTAAATCACCGCTCGGTAATCCCATGAGCAAGAAGATCCCATCTGCCATAGCTGTCAAGAGGATTGCCATTCCCTCCCTGAAGATCAATGCCCAGAGCAATGTTTCTGATGCAACTTCTGGTAGTAGGAACTAA
More
|
|||||||
| Protein seq | MVCMRDNFIGSGSRQFHGSTQLNSISFPRQPLKDQPQPQVMANQTQTVEELLQQMRHRYQIYLMQQMQRQCQEPRQVHQPQMQVQVPARNLNQSQSQEFPTSAPKTPVKMRSRYPKITIAKSTSDQRKVSASCYDCGEQDHYVRNCPWKVFARSPEKYKKQCPGSNQAPSQSTDQKDEFTPEDAARIPKRQRGRNTFRGARQLTRHLIKYGPPRPEDDISGERFSTDDDDDDDDDDDDDDDEDEATLNSFMERGLEFKACTRCGIVEHTASLCLPTCRCGEYTHYSDECPLRKVTCFLCEGTDHVPKDCQRNSVLALTKKEQGTTVQPIRQPMAVDDISHNPSALPPIPAPVEANHGRSNVARDVHKSLLVPVSAVNVHNQKLAPQDQASRFCLNCLTSTAHDTNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGSTLLRQHPQQVLSAPGQPTAVNSSNAPCIAPIRRPICKSPLGNPMSKKIPSAIAVKRIAIPSLKINAQSNVSDATSGSRN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g12560 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0005160 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0005910 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003800 | SBH | 0.0 | 0.049904 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0011840 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0188500 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0004840 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0172500 | RBH | 0.0025735 | 0.00582 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0004940 | SBH | 0.017638 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0013810 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0014360 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0068170 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008250 | SBH | 0.0 | 0.585091 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G011410 | RBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0006060 | RBH | 0.000000 | 0.000000 | 0.000000 |
