Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_10g0004790 | OGI:10020390 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr10:6058206-6060207 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggttgcggggcatacaacatggaacgaggccgagatgaaagcttttccggaggcgtgcatggaagagattgaggcacgcacaatcaccagcacctgccccaaccgtcaaggctacatcaacctggaggtgaagatgttccagaaggtgcagaaggtggtcaaccggcaccagctaaacaatttatgggatacatgtcgccgccagttccaaacttggtgctggctcgagtcaatggccactgggcttggttgctgtcccttcaccggcaatatcctagccagccctgagtggtggactcggatggatcatgtatgtatttatttcagttttgagctttttctgaatccagtgccatgttaggttcataatgaaatttgttgcaatcagaactaactcatgcttctagacgaatcacattagagaccatatttgtttggtattgtacaacatgtttgctattagagaccagattagttgcaaccagaacaaattcaagcctataaaccagaatttgttatgtacaacatgttcattgcggtactgttttgttatttattcatactatgtagtacttgaaataatgggcatgttagatcattcaaagtaattctacaagtacttgaagttgtaatatgtgatgttcattcagttcataatactcattaaagtcataaatccattcatgcttatgttagttaattaggagtaattgtacaagcacttcaagttgtaatatttgatgttcagtcactacataatgctcatcaaagtcacaaagcctttcatggtaatgttagttaaggcaatctattttggtactaggttaaaagcaatatcacattccttgctatttagttgtctgcatattggatgaacattactatttaatttgtttagttcattaaagtcataaagcgtaagattagcctattaagttacaaatagttgatgttgtactagctgctgtttattcactacatagtgcttatcaacgtcacaaagctaggttaaggcaatctattttggtactaggttaaaatcaattacccattggatcaaattacgttatctgaatattggatcaacaatactcatttaatgtgtttagttcaatgcagcaaagaaagatataattttccgtactaggttaaaagcaataacccattacttgctattcattcactacagaaccctcattgaagtcacagggccattcatgctgttaagatagtcatagtcataagttagttgttttgtacacaaataaggccctttgatattactgcggtcacaaatcattcctttctctttatgcctttgcagatgaggagaggcgcacgtgcattccggaatggtccccttctgtatattcctgagcaccatgcggttttcaggggtagggtttgtaccctgaaccgctctggagttcctgtcagaacacccatcaacgcagtgcctcagcaggccgagatcctcgacatagaggacctcaccgagcacaccctacaagaaccatctgagcagactccacggcatgggaagaggtcactgactagaggtaccacctctggcggaagctccaagaggtccaggggctcttctgctagcgatgctctcaaccgtttggcggacctcggggttcagtcaaacgatagcagaaccagaatggaagagataaagcaagcaaagagtgccaaggcctgcatggagcttctgaaggctgacggttacacctcgagggatcctatttaccacatggctctgagggtctttcgagatggcttcctcagggagtttttcttggacgactgccacactccggaggggaggttgtacttcatccaatcccaataccaagacacggctcaataccagccccttcccccctggatttggaggttacatccagtcagctcctgccggtttgtttcttgaactcattgcatggtctgttgcattgtgcaattgcatagtttataatcatggtgccgtacatgat
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| CDS seq | atggttgcggggcatacaacatggaacgaggccgagatgaaagcttttccggaggcgtgcatggaagagattgaggcacgcacaatcaccagcacctgccccaaccgtcaaggctacatcaacctggaggtgaagatgttccagaaggtgcagaaggtggtcaaccggcaccagctaaacaatttatgggatacatgtcgccgccagttccaaacttggtgctggctcgagtcaatggccactgggcttggttgctgtcccttcaccggcaatatcctagccagccctgagtggtggactcggatggatcatatgaggagaggcgcacgtgcattccggaatggtccccttctgtatattcctgagcaccatgcggttttcaggggtagggtttgtaccctgaaccgctctggagttcctgtcagaacacccatcaacgcagtgcctcagcaggccgagatcctcgacatagaggacctcaccgagcacaccctacaagaaccatctgagcagactccacggcatgggaagaggtcactgactagaggtaccacctctggcggaagctccaagaggtccaggggctcttctgctagcgatgctctcaaccgtttggcggacctcggggttcagtcaaacgatagcagaaccagaatggaagagataaagcaagcaaagagtgccaaggcctgcatggagcttctgaaggctgacggttacacctcgagggatcctatttaccacatggctctgagggtctttcgagatggcttcctcagggagtttttcttggacgactgccacactccggaggggaggttgtacttcatccaatcccaataccaagacacggctcaataccagccccttcccccctggatttggaggttacatccagtcagctcctgccggtttgtttcttga
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| Protein seq | MVAGHTTWNEAEMKAFPEACMEEIEARTITSTCPNRQGYINLEVKMFQKVQKVVNRHQLNNLWDTCRRQFQTWCWLESMATGLGCCPFTGNILASPEWWTRMDHMRRGARAFRNGPLLYIPEHHAVFRGRVCTLNRSGVPVRTPINAVPQQAEILDIEDLTEHTLQEPSEQTPRHGKRSLTRGTTSGGSSKRSRGSSASDALNRLADLGVQSNDSRTRMEEIKQAKSAKACMELLKADGYTSRDPIYHMALRVFRDGFLREFFLDDCHTPEGRLYFIQSQYQDTAQYQPLPPWIWRLHPVSSCRFVS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_10g0004790 | OsCMeo_10g0004790.01 | Chr10 | 6058206 | 6060207 | + | NAM | ||
| CDS seq | atggttgcggggcatacaacatggaacgaggccgagatgaaagcttttccggaggcgtgcatggaagagattgaggcacgcacaatcaccagcacctgccccaaccgtcaaggctacatcaacctggaggtgaagatgttccagaaggtgcagaaggtggtcaaccggcaccagctaaacaatttatgggatacatgtcgccgccagttccaaacttggtgctggctcgagtcaatggccactgggcttggttgctgtcccttcaccggcaatatcctagccagccctgagtggtggactcggatggatcatatgaggagaggcgcacgtgcattccggaatggtccccttctgtatattcctgagcaccatgcggttttcaggggtagggtttgtaccctgaaccgctctggagttcctgtcagaacacccatcaacgcagtgcctcagcaggccgagatcctcgacatagaggacctcaccgagcacaccctacaagaaccatctgagcagactccacggcatgggaagaggtcactgactagaggtaccacctctggcggaagctccaagaggtccaggggctcttctgctagcgatgctctcaaccgtttggcggacctcggggttcagtcaaacgatagcagaaccagaatggaagagataaagcaagcaaagagtgccaaggcctgcatggagcttctgaaggctgacggttacacctcgagggatcctatttaccacatggctctgagggtctttcgagatggcttcctcagggagtttttcttggacgactgccacactccggaggggaggttgtacttcatccaatcccaataccaagacacggctcaataccagccccttcccccctggatttggaggttacatccagtcagctcctgccggtttgtttcttga
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| Protein seq | MVAGHTTWNEAEMKAFPEACMEEIEARTITSTCPNRQGYINLEVKMFQKVQKVVNRHQLNNLWDTCRRQFQTWCWLESMATGLGCCPFTGNILASPEWWTRMDHMRRGARAFRNGPLLYIPEHHAVFRGRVCTLNRSGVPVRTPINAVPQQAEILDIEDLTEHTLQEPSEQTPRHGKRSLTRGTTSGGSSKRSRGSSASDALNRLADLGVQSNDSRTRMEEIKQAKSAKACMELLKADGYTSRDPIYHMALRVFRDGFLREFFLDDCHTPEGRLYFIQSQYQDTAQYQPLPPWIWRLHPVSSCRFVS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 5.633880 | 8.465503 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0187701 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g10880 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0187701 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0005100 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0004820 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0004440 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0005140 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0004860 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0101900 | SBH | 0.004106 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0005060 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0105200 | SBH | 0.0108195 | 0 | 0.030182 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0004930 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0004960 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0005090 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0004830 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0005190 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G004990 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0005050 | SBH | 0.0 | 0.0 | 0.0 |
