Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
LOC_Os10g10880		OGI:10020390 \| 16/16			Nipponbare \| IRGSP 1.0 \| MSU			Chr10:6024491-6027999		Homologues MicroCollinearity RGI-JBrowse RGAP Ricevarmap2
Gene Symbol		-
DNA seq		ATGGCAGCGGTAGCCGTGAAGCGCAAGCTCATTGTCGACAAATCCCCCACCCATCGCCTCCTCCACTCACCTCTGTCACCCATCACTTTGGTGAGAAGGAGAAGGGTACCTTCAGATCTAGAATCTTCTGAGGGTTCCTCCACCTCCCTTCGTTCTGACGCTGCCTACACCGCCACCCTCGAAGAAGATGTTCAAGCTGTAGCACGTGCCGTTATCCGCATCGCCTTGAAGTACCCAGAAGCAATCTGCCAGTTGGTGCGCTGCCTCACCCCGGGGAACGTTGCTTCAACACTGGATTGGGACCTCCTCGACTCCGACCACCTATAAAAGGTAGAGCCAAAATTTTTGTGATGTTTTTTCCCCTTTTGTTGCTTGCATGACTTTGGTTCATAGATGGTTGCGGGGCATACAACATGGAACGAGGCCGAGATGAAAGCTTTTCCGGAGGCGTGCATGGAAGAGATTGAGGCACGCACAATCACCAGCACCTGCCCCAACCGTCAAGGCTACATCAACCTGGAGGTGAAGATGTTCCAGAAGGTGCAGAAGGTGGTCAACCGGCACCAGCTAAACAATTTATGGGATACATGTCGCCGCCAGTTCCAAACTTGGTGCTGGCTCGAGTCAATGGCCACTGGGCTTGGTTGCTGTCCCTTCACCGGCAATATCCTAGCCAGCCCTGAGTGGTGGACTCGGATGGATCATGTATGTATTTATTTCAGTTTTGAGCTTTTTCTGAATCCAGTGCCATGTTAGGTTCATAATGAAATTTGTTGCAATCAGAACTAACTCATGCTTCTAGACGAATCACATTAGAGACCATATTTGTTTGGTATTGTACAACATGTTTGCTATTAGAGACCAGATTAGTTGCAACCAGAACAAATTCAAGCCTATAAACCAGAATTTGTTATGTACAACATGTTCATTGCGGTACTGTTTTGTTATTTATTCATACTATGTAGTACTTGAAATAATGGGCATGTTAGATCATTCAAAGTAATTCTACAAGTACTTGAAGTTGTAATATGTGATGTTCATTCAGTTCATAATACTCATTAAAGTCATAAATCCATTCATGCTTATGTTAGTTAATTAGGAGTAATTGTACAAGCACTTCAAGTTGTAATATTTGATGTTCAGTCACTACATAATGCTCATCAAAGTCACAAAGCCTTTCATGGTAATGTTAGTTAAGGCAATCTATTTTGGTACTAGGTTAAAAGCAATATCACATTCCTTGCTATTTAGTTGTCTGCATATTGGATGAACATTACTATTTAATTTGTTTAGTTCATTAAAGTCATAAAGCGTAAGATTAGCCTATTAAGTTACAAATAGTTGATGTTGTACTAGCTGCTGTTTATTCACTACATAGTGCTTATCAACGTCACAAAGCTAGGTTAAGGCAATCTATTTTGGTACTAGGTTAAAATCAATTACCCATTGGATCAAATTACGTTATCTGAATATTGGATCAACAATACTCATTTAATGTGTTTAGTTCAATGCAGCAAAGAAAGATATAATTTTCCGTACTAGGTTAAAAGCAATAACCCATTACTTGCTATTCATTCACTACAGAACCCTCATTGAAGTCACAGGGCCATTCATGCTGTTAAGATAGTCATAGTCATAAGTTAGTTGTTTTGTACACAAATAAGGCCCTTTGATATTACTGCGGTCACAAATCATTCCTTTCTCTTTATGCCTTTGCAGATGAGGAGAGGCGCACGTGCATTCCGGAATGGTCCCCTTCTGTATATTCCTGAGCACCATGCGGTTTTCAGGGGTAGGGTTTGTACCCTGAACCGCTCTGGAGTTCCTGTCAGAACACCCATCAACGCAGTGCCTCAGCAGGCCGAGATCCTCGACATAGAGGACCTCACCGAGCACACCCTACAAGAACCATCTGAGCAGACTCCACGGCATGGGAAGAGGTCACTGACTAGAGGTACCACCTCTGGCGGAAGCTCCAAGAGGTCCAGGGGCTCTTCTGCTAGCGATGCTCTCAACCGTTTGGCGGACCTCGGGGTTCAGTCAAACGATAGCAGAACCAGAATGGAAGAGATAAAGCAAGCAAAGAGTGCCAAGGCCTGCATGGAGCTTCTGAAGGCTGACGGTTACACCTCGAGGGATCCTATTTACCACATGGCTCTGAGGGTCTTTCGAGATGGCTTCCTCAGGGAGTTTTTCTTGGACGACTGCCACACTCCGGAGGGGAGGTTGTACTTCATCCAATCCCAATACCAAGACACGGCTCAATACCAGCCCCTTCCCCCCTGGATTTGGAGGTTACATCCAGTCAGCTCCTGCCGGTTTGTTTCTTGAACTCATTGCATGGTCTGTTGCATTGTGCAATTGCATAGTTTATAATCATGGTGCCGTACATGATTCCTGCTTTTGAAGTGTTGTTAGCAAACTCATTCATGTTATTTTGATGCATTTTGCAATGACATAGTTCACAATGATGGTGCCATACATAAATCCTTATTTTCAAGTGCTGTTAACTACTCAATCATGTTAGTTTGCTGCAAATTTCAATGAAATAGGTTATAATTATGGTGCCATACATGATTTGGTATTTTTGAGTGTTGTTCACAAATAAATATGTTAATTTGCTAGTGTCATTAACCAATATATATCAATGTTGCTGTTGTCACAACTTCAGTCAGTCCTTTTTTTGTACATATTACTGCCTTCTGTGTTGATGGATTCTTTGGTGCTACTGGTGATGCTGTTCTTGGAGCTGTAGCTATTAATGCTGTTGGAGATGATGCTGCTACTGGTGATGGAGAAGGAGATGGCGTTGGAGATGATGATGATGATGCTGGTGATGGTGAAGCATATGGCGATGGCGATGACGAGGGAGGAGATGGTGCTGGTGATGGCCATGATGATTATGGTGACGATGGCGATGGTGGTGCTGCGGGTTACGGGGGAACTGGTTATGTGGGTGCTCTTTATTGGGGTTGGGACCTGGAAGTTATGATCTATCTGGTTATGCAATGTTTTGACCTCATGCCGATCGGACCTACTGCTAGATCCTTTCGAACGATGAGTGTGTCTGAGCTAGAGCTTTTCGAACGTGTTGTCTGTCCAAATAATTTTGCTCGACTTCGTCTCGAGCAACGTAACTGTTTTGTTCTGTTGAGTGTGTAGGATGAAACATTCTCGGCACATTTGATTTGATGTAGCTCTAAATAATTTAGCTGGATCGTGAATCATCTTATTATTCTGCCTAATTGTACGTGGTATTTGTTTGTTATGCTGACTAACATGCAGGTTGCATAAATTATAGGATGGCTTGGTCTGGGTCAACCATGTGCAAGTACTTCCATAGAGTGCTTAATGCAGTTTATGCCATGGCTGCTGATATCAACAAGCCTGCAAATCCTAATTTTCGCAGAGTGCATAACTGTGTTATGCAAGATGCAAATTTCCTTCCTTTTGCCGGGGCCGCAGGTGTAGTTGACGGGACCCACATCCCAATTCGTGTTGCAGTTTAA More
CDS seq		ATGGCAGCGGTAGCCGTGAAGCGCAAGCTCATTGTCGACAAATCCCCCACCCATCGCCTCCTCCACTCACCTCTGTCACCCATCACTTTGGTGAGAAGGAGAAGGGTACCTTCAGATCTAGAATCTTCTGAGGGTTCCTCCACCTCCCTTCGTTCTGACGCTGCCTACACCGCCACCCTCGAAGAAGATGTTCAAGCTGTAGCACGTGCCGTTATCCGCATCGCCTTGAAGTACCCAGAAGCAATCTGCCAGTTGATGGTTGCGGGGCATACAACATGGAACGAGGCCGAGATGAAAGCTTTTCCGGAGGCGTGCATGGAAGAGATTGAGGCACGCACAATCACCAGCACCTGCCCCAACCGTCAAGGCTACATCAACCTGGAGGTGAAGATGTTCCAGAAGGTGCAGAAGGTGGTCAACCGGCACCAGCTAAACAATTTATGGGATACATGTCGCCGCCAGTTCCAAACTTGGTGCTGGCTCGAGTCAATGGCCACTGGGCTTGGTTGCTGTCCCTTCACCGGCAATATCCTAGCCAGCCCTGAGTGGTGGACTCGGATGGATCATATGAGGAGAGGCGCACGTGCATTCCGGAATGGTCCCCTTCTGTATATTCCTGAGCACCATGCGGTTTTCAGGGGTAGGGTTTGTACCCTGAACCGCTCTGGAGTTCCTGTCAGAACACCCATCAACGCAGTGCCTCAGCAGGCCGAGATCCTCGACATAGAGGACCTCACCGAGCACACCCTACAAGAACCATCTGAGCAGACTCCACGGCATGGGAAGAGGTCACTGACTAGAGGTACCACCTCTGGCGGAAGCTCCAAGAGGTCCAGGGGCTCTTCTGCTAGCGATGCTCTCAACCGTTTGGCGGACCTCGGGGTTCAGTCAAACGATAGCAGAACCAGAATGGAAGAGATAAAGCAAGCAAAGAGTGCCAAGGCCTGCATGGAGCTTCTGAAGGCTGACGGTTACACCTCGAGGGATCCTATTTACCACATGGCTCTGAGGGTCTTTCGAGATGGCTTCCTCAGGGAGTTTTTCTTGGACGACTGCCACACTCCGGAGGGGAGCCCCTTCCCCCCTGGATTTGGAGGTTACATCCAGTCAGCTCCTGCCGTCAGTCCTTTTTTTGTACATATTACTGCCTTCTGTGTTGATGGATTCTTTGGTGCTACTGGTGATGCTGTTCTTGGAGCTGTAGCTATTAATGCTGTTGGAGATGATGCTGCTACTGGTGATGGAGAAGGAGATGGCGTTGGAGATGATGATGATGATGCTGGTGATGGTGAAGCATATGGCGATGGCGATGACGAGGGAGGAGATGGTGCTGGTGATGGCCATGATGATTATGGTGACGATGGCGATGGTGGTGCTGCGGGTTACGGGGGAACTGGTTATGTGGGTGCTCTTTATTGGGGTTGGGACCTGGAAGTTATGATCTATCTGGTTATGCAATGTTTTGACCTCATGCCGATCGGACCTACTGCTAGATCCTTTCGAACGATGAGTGTGTCTGAGCTAGAGCTTTTCGAACGTGTTGTCTGTCCAAATAATTTTGCTCGACTTCGTCTCGAGCAACGTTGCATAAATTATAGGATGGCTTGGTCTGGGTCAACCATGTGCAAGTACTTCCATAGAGTGCTTAATGCAGTTTATGCCATGGCTGCTGATATCAACAAGCCTGCAAATCCTAATTTTCGCAGAGTGCATAACTGTGTTATGCAAGATGCAAATTTCCTTCCTTTTGCCGGGGCCGCAGGTGTAGTTGACGGGACCCACATCCCAATTCGTGTTGCAGTTTAA More
Protein seq		MAAVAVKRKLIVDKSPTHRLLHSPLSPITLVRRRRVPSDLESSEGSSTSLRSDAAYTATLEEDVQAVARAVIRIALKYPEAICQLMVAGHTTWNEAEMKAFPEACMEEIEARTITSTCPNRQGYINLEVKMFQKVQKVVNRHQLNNLWDTCRRQFQTWCWLESMATGLGCCPFTGNILASPEWWTRMDHMRRGARAFRNGPLLYIPEHHAVFRGRVCTLNRSGVPVRTPINAVPQQAEILDIEDLTEHTLQEPSEQTPRHGKRSLTRGTTSGGSSKRSRGSSASDALNRLADLGVQSNDSRTRMEEIKQAKSAKACMELLKADGYTSRDPIYHMALRVFRDGFLREFFLDDCHTPEGSPFPPGFGGYIQSAPAVSPFFVHITAFCVDGFFGATGDAVLGAVAINAVGDDAATGDGEGDGVGDDDDDAGDGEAYGDGDDEGGDGAGDGHDDYGDDGDGGAAGYGGTGYVGALYWGWDLEVMIYLVMQCFDLMPIGPTARSFRTMSVSELELFERVVCPNNFARLRLEQRCINYRMAWSGSTMCKYFHRVLNAVYAMAADINKPANPNFRRVHNCVMQDANFLPFAGAAGVVDGTHIPIRVAV
Function		-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os10g10880	LOC_Os10g10880.1	Chr10	6024491	6027999	+	MSU_osa1r7
CDS seq	ATGGCAGCGGTAGCCGTGAAGCGCAAGCTCATTGTCGACAAATCCCCCACCCATCGCCTCCTCCACTCACCTCTGTCACCCATCACTTTGGTGAGAAGGAGAAGGGTACCTTCAGATCTAGAATCTTCTGAGGGTTCCTCCACCTCCCTTCGTTCTGACGCTGCCTACACCGCCACCCTCGAAGAAGATGTTCAAGCTGTAGCACGTGCCGTTATCCGCATCGCCTTGAAGTACCCAGAAGCAATCTGCCAGTTGATGGTTGCGGGGCATACAACATGGAACGAGGCCGAGATGAAAGCTTTTCCGGAGGCGTGCATGGAAGAGATTGAGGCACGCACAATCACCAGCACCTGCCCCAACCGTCAAGGCTACATCAACCTGGAGGTGAAGATGTTCCAGAAGGTGCAGAAGGTGGTCAACCGGCACCAGCTAAACAATTTATGGGATACATGTCGCCGCCAGTTCCAAACTTGGTGCTGGCTCGAGTCAATGGCCACTGGGCTTGGTTGCTGTCCCTTCACCGGCAATATCCTAGCCAGCCCTGAGTGGTGGACTCGGATGGATCATATGAGGAGAGGCGCACGTGCATTCCGGAATGGTCCCCTTCTGTATATTCCTGAGCACCATGCGGTTTTCAGGGGTAGGGTTTGTACCCTGAACCGCTCTGGAGTTCCTGTCAGAACACCCATCAACGCAGTGCCTCAGCAGGCCGAGATCCTCGACATAGAGGACCTCACCGAGCACACCCTACAAGAACCATCTGAGCAGACTCCACGGCATGGGAAGAGGTCACTGACTAGAGGTACCACCTCTGGCGGAAGCTCCAAGAGGTCCAGGGGCTCTTCTGCTAGCGATGCTCTCAACCGTTTGGCGGACCTCGGGGTTCAGTCAAACGATAGCAGAACCAGAATGGAAGAGATAAAGCAAGCAAAGAGTGCCAAGGCCTGCATGGAGCTTCTGAAGGCTGACGGTTACACCTCGAGGGATCCTATTTACCACATGGCTCTGAGGGTCTTTCGAGATGGCTTCCTCAGGGAGTTTTTCTTGGACGACTGCCACACTCCGGAGGGGAGCCCCTTCCCCCCTGGATTTGGAGGTTACATCCAGTCAGCTCCTGCCGTCAGTCCTTTTTTTGTACATATTACTGCCTTCTGTGTTGATGGATTCTTTGGTGCTACTGGTGATGCTGTTCTTGGAGCTGTAGCTATTAATGCTGTTGGAGATGATGCTGCTACTGGTGATGGAGAAGGAGATGGCGTTGGAGATGATGATGATGATGCTGGTGATGGTGAAGCATATGGCGATGGCGATGACGAGGGAGGAGATGGTGCTGGTGATGGCCATGATGATTATGGTGACGATGGCGATGGTGGTGCTGCGGGTTACGGGGGAACTGGTTATGTGGGTGCTCTTTATTGGGGTTGGGACCTGGAAGTTATGATCTATCTGGTTATGCAATGTTTTGACCTCATGCCGATCGGACCTACTGCTAGATCCTTTCGAACGATGAGTGTGTCTGAGCTAGAGCTTTTCGAACGTGTTGTCTGTCCAAATAATTTTGCTCGACTTCGTCTCGAGCAACGTTGCATAAATTATAGGATGGCTTGGTCTGGGTCAACCATGTGCAAGTACTTCCATAGAGTGCTTAATGCAGTTTATGCCATGGCTGCTGATATCAACAAGCCTGCAAATCCTAATTTTCGCAGAGTGCATAACTGTGTTATGCAAGATGCAAATTTCCTTCCTTTTGCCGGGGCCGCAGGTGTAGTTGACGGGACCCACATCCCAATTCGTGTTGCAGTTTAA More
Protein seq	MAAVAVKRKLIVDKSPTHRLLHSPLSPITLVRRRRVPSDLESSEGSSTSLRSDAAYTATLEEDVQAVARAVIRIALKYPEAICQLMVAGHTTWNEAEMKAFPEACMEEIEARTITSTCPNRQGYINLEVKMFQKVQKVVNRHQLNNLWDTCRRQFQTWCWLESMATGLGCCPFTGNILASPEWWTRMDHMRRGARAFRNGPLLYIPEHHAVFRGRVCTLNRSGVPVRTPINAVPQQAEILDIEDLTEHTLQEPSEQTPRHGKRSLTRGTTSGGSSKRSRGSSASDALNRLADLGVQSNDSRTRMEEIKQAKSAKACMELLKADGYTSRDPIYHMALRVFRDGFLREFFLDDCHTPEGSPFPPGFGGYIQSAPAVSPFFVHITAFCVDGFFGATGDAVLGAVAINAVGDDAATGDGEGDGVGDDDDDAGDGEAYGDGDDEGGDGAGDGHDDYGDDGDGGAAGYGGTGYVGALYWGWDLEVMIYLVMQCFDLMPIGPTARSFRTMSVSELELFERVVCPNNFARLRLEQRCINYRMAWSGSTMCKYFHRVLNAVYAMAADINKPANPNFRRVHNCVMQDANFLPFAGAAGVVDGTHIPIRVAV More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	0.0

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_10g0187701	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os04g19870	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os10g0187701	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_10g0005100	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_10g0004820	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_10g0004790	RBH	0.000000	5.633880	8.465503
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_10g0005140	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_10g0004860	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_10G0101900	RBH	0.004106	0	0
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_10g0005060	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_10G0112200	RBH	0	0	0
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_10g0004930	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_10g0004950	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_10g0005090	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_10g0004830	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_10g0005190	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_10G004990	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_10g0005050	RBH	0.0	0.0	0.0

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.