Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_10g0003750 | OGI:10015810 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr10:4479000-4484648 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cacaccgtacactcactaaaagccgtagcaatggcgacttggatacttggatggttgctatggcttcccgtgtttctcatctccctctacctcgtcgacatccttgcacactcctgccgccgcctcccgcctggaccccgcccacttccgttcatcggcagcctccacctgctcggcgaccagccacaccgctcgctcgccggcctcgccaagaagtacggccctctcatgtcgctccgcctgggtgcagtcaccacggtggtcgtctcctcgccggaggtcgcccgcgagttcgtgcagaagcacgacgccgtcttcgcggaccggtccatcccggactccatcggcgaccacaccaagaactccgtcatctggctgaaccccggcccgcggtggcgcgcgctccgcaggatcatggcgacggagctgttctcgccgcaccagctcgacgcgctccagcagctccggcaggagaaggtggcggagctcgtcgaccacgtcgcgcggctggcgcgcgagagcgccgcggtggacgtcggccgcgtggcgttcgccacgagcctgaacctcctctcgcgcaccatcttctcgcgcgacctgaccagcctcgacgaccgtggcgcgtccagggagttcaagcaggtgatcacagacatcatggaggcagcggggagccccaacctgtccgacttctacccggcgatcgccgccgtcgacctgcagggctggcgccggcggtgcgcacggctgttcacgcagctgcaccggctgttcgacgatgagatggaccatcgtaagctgcatagccgccatggtggccctggagagaatgggaaggagaaggacgacttcctggaggtgctcctgaggctcggcgcgcgggacgacgacatagcagggcttgacggtgacacgctccgctcgctcttcattgtaagtactctcttcagtttgataattcgtgttattttcaataaagatatggtttccaaagcatatatatgagtgtgattttctgttataactaggaagaaaggccccgcagatgcgcaggcatcttatttactgttttatgaaataatgttaaaataagtcatatctcaccatttgtacgctgtgagatagaccatagactttaatatatttaagaatgcatgttagacttaaaaaaacatcttgtcctagttccatatagattcttctacagtcacacaaacttattatcactattttaaaagttgagtaatatatgaaactatatatgtttatttccaaatccatatataaatattccaaaaacaccacttctaccgattaataggatacaccattaaaattaaacaattaaagttaaacataaatactgggtgaagatagtcatagtcatcgagactttcttactctagtgccttaaatgatgggtctctcattaagatagccgtgcacgtgctctctcgagatcaacctagagcacaattttaatgtctaatttactatcacacccttatgtagtattgcattgtcatactggcaccgccttaactcagtgtatatacgcccctgttatacttacgatagcatagcaaacactgttgtttatgcttggtgaccctaggaaagaacaaagaaaagataaaggtgatcgacatagttgtgttttgaatcgatttgtggtacagagtagacacggtatgcttaagattttgatcattgctactcaaatttttatagtatagctagaatactctcattcataaagaagtaaggtccatcacccgatggtagttaaataattagccaaagagagacataccatcacaataatctccagagcactattgtttatattttgacaaatacctatagtttagcacctgatttgttttaacacctattgttggcaacaacatgataaacctttactaatttaaatgatgtatttatacttctaaacctatttatcaattacgtagtatatttatcatgtcatatttgacaaatatgaaattattttaaaattataattacattaattttcatatattagcccgagatgtgatgatgcatttagaatcagaatacaaattttattagacacaaatattttatttaaataaaggaatacaacaggatcacaaattggatatataatttaaaagataaccgtttcgagataattgattttatatttgatatttatattaccgatctaatttatatttctgcatatttttggagtaatatatattttatatggtaaaaagttatattttaaagaccattgattttgttccaatgtacgtatgttttttattaagtatgtttcttattggctttatccttttttatggtaggtacgtgctttttttttcctcataatagttatatgtaaccttttttctcattttacatacgtacttatgtttttttgttctttgaccatcaaggtgcatacagatctactaagcacgctatgttttattttagcttttgtcgtacatacaggagaaaggtattatatatatagagagagatctgatttattgtataaaattatgggtccaccatttaagtgaaaatcaacagcatatatctaatctaacattataaaataacgggtctaccaatttaaataaaaatcgatggtgagattaaattttgtcacgtagcatcctaatagcatttgtatacagatctactaagcacgctgtgttttattttatctttcgtcatacatacaggagaaaggtattatatatagagagatctgattttgtataaaattacaggtccaccatttaagtgaaaatcaacagtatatatctaatctaatataataacgggtccaccaatttaaataaaaaattgacggtgagattaaattttgccacgtggcatcctaggacctatacatgtaattcgaataccttctaattataccatattttgtatgttattgatagtcagagtttgtaatagtttgacctcaatattgtccataatttttctacttattagctgacaaaaatttcctcaaatccccgttatatgtgcctagctttcgcattcaatcctctagtgaacagagttcgagcatgaaggagggagccagaataactcaacggcagtggttttttctttcttggggaagtgtgtggacagtgacactgctggggaagggctctttagtcctattttgcaaccctttgtcccgggttacaatcgggacgcctaatccggaactaaaaaagatgtccaatttttaagtcccggttggtgttaccattcgagactagatttagagatgattttgtcgatgattttgtgaatgatttggtgctgcttgcatctattgatttcgagcaccaatgtcgtcacccccaaatccccacaaatcattcaccaaatcatccacaaaatcattcctaaatctacaaatatctacaacaaaatctacaaatcattcacaaattcttaaaaaaaaaccacaaagccacagccgttgtcggccggctgtctgtgcaccgcctcctggcctcccatcccgccgcctccgggccaccaccgctgccggttccaccgggccgccacccggctgctgcggccgcttccaccgcctccaccttctgcggccttgagtgccgccacggccacttccgccgggccgccacccagcctcccctcccgtcggatctggcagaggggacgccaccgcccgctagccgcccgtctgtcgcctctgcctgctgctgcctcatgtgccgccacggtcgcttccgccggtcactgcctggcctcccctcccatcggatctggtggagggaaggccgtcgcccgctgtcaccgtcgtcagaggaggggggagggggaggagggaggagaggagggggagaggttgagaaaataaggggaggaggagataaggacaagtcgcacgactcgaggcagctgtttgtgattttttttttaattttggtcatggttggtataaacaaccaggactaaagatggatttttactcccggttagtaacaccaaccaaggctaaagagaatggcggtctgacatgtttttggaccgggaataaaaatgatatttagtctcggtaggtgttaccgactgggagtaaagatcaaaaagtttcactggctttttaaccgggacttaaaaatctttttagtcctggttcctattgaaaccaggactaaagtgattttttgccaaccggacaactctagcaaatatggcaaattaagtcgatatggatatgggtgtttgtgttgggggggggattgataggagtgttgggtggaggtcggtaggatttagacgaaggtaatgggaggaggaagcctagcgatagctggcggcaataacagggcgatacgacattgatagttctacctcgaccacgtgtggttgagtaggtgggtagtgtactggaattagaagaggggatacttgtcggagtgtaggagggggtgacgatgattgatccaatgaaaacccttcaaacaaaggttaggagatatgggtcggaaagtgggtagttgagaagtaggagcatgaagatggctagccagtgggagagcacactagtggggcccaatgagtagatgggtggcggtactcagggtcagctcgggaagggtgacggtggtgcacatatgtgtgtgtggctgcacatcatttggatctgtttggagacaggggaggagggtgtatatacgaagttcgaagtgatcgtaatttacaaataaataaggtgcgattgacaaataaccaacccttatttatctttttcaattcctaaaacatcttaaatgttgtgatgtagaagcaggattagttttcattatctgaaggattatgttttgttattaactgtcaccaccgtttcatagtatatctattatgtaggacttgtttgctgctgggagtgacacaagctctagcacaatagaatgggcaatggtggaattgcttaaaaacacattatcaatgggtaaagcctgtgatgagcttgcccaggttgttggatcaagaagaagaattgaagagtctgaaattggtcaattgccatatttgcaagctgtcataaaagagacattgagattacatccaccggttccactgttaccacatcgagctaagatggcgatgcaaataatgggttatacaatacctaatggtacaaaaatattgataaatgtgtgggccatgggtagagataaaaacatttggacagaacctgagaagttcatgccagagagattccttgatagaacaattgacttcagaggtggagatttagagctcatcccatttggtgcaggccgtcgaatctgccctggaatgccattagcaattaggatggtgcatgtggttcttgcatcactattaattcatttcaaatggagactaccggttgaggtggaaagaaatggaattgatatgacagagaagtttggattgactctagtaaaagctattccgctatgtgctttggccacaccaacttaagtcaacgagccactgtttgagttagaataatggactgctctttgtcaactcaagcattgtatcatgcacggtattattgatgtgaaaataaaaatacatcatcaatgaaatttgtgggtatttact
More
|
||||||||||
| CDS seq | atggcgacttggatacttggatggttgctatggcttcccgtgtttctcatctccctctacctcgtcgacatccttgcacactcctgccgccgcctcccgcctggaccccgcccacttccgttcatcggcagcctccacctgctcggcgaccagccacaccgctcgctcgccggcctcgccaagaagtacggccctctcatgtcgctccgcctgggtgcagtcaccacggtggtcgtctcctcgccggaggtcgcccgcgagttcgtgcagaagcacgacgccgtcttcgcggaccggtccatcccggactccatcggcgaccacaccaagaactccgtcatctggctgaaccccggcccgcggtggcgcgcgctccgcaggatcatggcgacggagctgttctcgccgcaccagctcgacgcgctccagcagctccggcaggagaaggtggcggagctcgtcgaccacgtcgcgcggctggcgcgcgagagcgccgcggtggacgtcggccgcgtggcgttcgccacgagcctgaacctcctctcgcgcaccatcttctcgcgcgacctgaccagcctcgacgaccgtggcgcgtccagggagttcaagcaggtgatcacagacatcatggaggcagcggggagccccaacctgtccgacttctacccggcgatcgccgccgtcgacctgcagggctggcgccggcggtgcgcacggctgttcacgcagctgcaccggctgttcgacgatgagatggaccatcgtaagctgcatagccgccatggtggccctggagagaatgggaaggagaaggacgacttcctggaggacttgtttgctgctgggagtgacacaagctctagcacaatagaatgggcaatggtggaattgcttaaaaacacattatcaatgggtaaagcctgtgatgagcttgcccaggttgttggatcaagaagaagaattgaagagtctgaaattggtcaattgccatatttgcaagctgtcataaaagagacattgagattacatccaccggttccactgttaccacatcgagctaagatggcgatgcaaataatgggttatacaatacctaatggtacaaaaatattgataaatgtgtgggccatgggtagagataaaaacatttggacagaacctgagaagttcatgccagagagattccttgatagaacaattgacttcagaggtggagatttagagctcatcccatttggtgcaggccgtcgaatctgccctggaatgccattagcaattaggatggtgcatgtggttcttgcatcactattaattcatttcaaatggagactaccggttgaggtggaaagaaatggaattgatatgacagagaagtttggattgactctagtaaaagctattccgctatgtgctttggccacaccaacttaa
More
|
||||||||||
| Protein seq | MATWILGWLLWLPVFLISLYLVDILAHSCRRLPPGPRPLPFIGSLHLLGDQPHRSLAGLAKKYGPLMSLRLGAVTTVVVSSPEVAREFVQKHDAVFADRSIPDSIGDHTKNSVIWLNPGPRWRALRRIMATELFSPHQLDALQQLRQEKVAELVDHVARLARESAAVDVGRVAFATSLNLLSRTIFSRDLTSLDDRGASREFKQVITDIMEAAGSPNLSDFYPAIAAVDLQGWRRRCARLFTQLHRLFDDEMDHRKLHSRHGGPGENGKEKDDFLEDLFAAGSDTSSSTIEWAMVELLKNTLSMGKACDELAQVVGSRRRIEESEIGQLPYLQAVIKETLRLHPPVPLLPHRAKMAMQIMGYTIPNGTKILINVWAMGRDKNIWTEPEKFMPERFLDRTIDFRGGDLELIPFGAGRRICPGMPLAIRMVHVVLASLLIHFKWRLPVEVERNGIDMTEKFGLTLVKAIPLCALATPT |
||||||||||
| Function | Geraniol 8-hydroxylase [UniProtKB/Swiss-Prot:Q8VWZ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_10g0003750 | OsCMeo_10g0003750.01 | Chr10 | 4479002 | 4484522 | + | NAM | ||
| CDS seq | atggcgacttggatacttggatggttgctatggcttcccgtgtttctcatctccctctacctcgtcgacatccttgcacactcctgccgccgcctcccgcctggaccccgcccacttccgttcatcggcagcctccacctgctcggcgaccagccacaccgctcgctcgccggcctcgccaagaagtacggccctctcatgtcgctccgcctgggtgcagtcaccacggtggtcgtctcctcgccggaggtcgcccgcgagttcgtgcagaagcacgacgccgtcttcgcggaccggtccatcccggactccatcggcgaccacaccaagaactccgtcatctggctgaaccccggcccgcggtggcgcgcgctccgcaggatcatggcgacggagctgttctcgccgcaccagctcgacgcgctccagcagctccggcaggagaaggtggcggagctcgtcgaccacgtcgcgcggctggcgcgcgagagcgccgcggtggacgtcggccgcgtggcgttcgccacgagcctgaacctcctctcgcgcaccatcttctcgcgcgacctgaccagcctcgacgaccgtggcgcgtccagggagttcaagcaggtgatcacagacatcatggaggcagcggggagccccaacctgtccgacttctacccggcgatcgccgccgtcgacctgcagggctggcgccggcggtgcgcacggctgttcacgcagctgcaccggctgttcgacgatgagatggaccatcgtaagctgcatagccgccatggtggccctggagagaatgggaaggagaaggacgacttcctggaggacttgtttgctgctgggagtgacacaagctctagcacaatagaatgggcaatggtggaattgcttaaaaacacattatcaatgggtaaagcctgtgatgagcttgcccaggttgttggatcaagaagaagaattgaagagtctgaaattggtcaattgccatatttgcaagctgtcataaaagagacattgagattacatccaccggttccactgttaccacatcgagctaagatggcgatgcaaataatgggttatacaatacctaatggtacaaaaatattgataaatgtgtgggccatgggtagagataaaaacatttggacagaacctgagaagttcatgccagagagattccttgatagaacaattgacttcagaggtggagatttagagctcatcccatttggtgcaggccgtcgaatctgccctggaatgccattagcaattaggatggtgcatgtggttcttgcatcactattaattcatttcaaatggagactaccggttgaggtggaaagaaatggaattgatatgacagagaagtttggattgactctagtaaaagctattccgctatgtgctttggccacaccaacttaa
More
|
|||||||
| Protein seq | MATWILGWLLWLPVFLISLYLVDILAHSCRRLPPGPRPLPFIGSLHLLGDQPHRSLAGLAKKYGPLMSLRLGAVTTVVVSSPEVAREFVQKHDAVFADRSIPDSIGDHTKNSVIWLNPGPRWRALRRIMATELFSPHQLDALQQLRQEKVAELVDHVARLARESAAVDVGRVAFATSLNLLSRTIFSRDLTSLDDRGASREFKQVITDIMEAAGSPNLSDFYPAIAAVDLQGWRRRCARLFTQLHRLFDDEMDHRKLHSRHGGPGENGKEKDDFLEDLFAAGSDTSSSTIEWAMVELLKNTLSMGKACDELAQVVGSRRRIEESEIGQLPYLQAVIKETLRLHPPVPLLPHRAKMAMQIMGYTIPNGTKILINVWAMGRDKNIWTEPEKFMPERFLDRTIDFRGGDLELIPFGAGRRICPGMPLAIRMVHVVLASLLIHFKWRLPVEVERNGIDMTEKFGLTLVKAIPLCALATPT
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_10g0003750 | OsCMeo_10g0003750.02 | Chr10 | 4479000 | 4484648 | + | IsoSeq | ||
| CDS seq | caccgtacactcactaaaagccgtagcaatggcgacttggatacttggatggttgctatggcttcccgtgtttctcatctccctctacctcgtcgacatccttgcacactcctgccgccgcctcccgcctggaccccgcccacttccgttcatcggcagcctccacctgctcggcgaccagccacaccgctcgctcgccggcctcgccaagaagtacggccctctcatgtcgctccgcctgggtgcagtcaccacggtggtcgtctcctcgccggaggtcgcccgcgagttcgtgcagaagcacgacgccgtcttcgcggaccggtccatcccggactccatcggcgaccacaccaagaactccgtcatctggctgaaccccggcccgcggtggcgcgcgctccgcaggatcatggcgacggagctgttctcgccgcaccagctcgacgcgctccagcagctccggcaggagaaggtggcggagctcgtcgaccacgtcgcgcggctggcgcgcgagagcgccgcggtggacgtcggccgcgtggcgttcgccacgagcctgaacctcctctcgcgcaccatcttctcgcgcgacctgaccagcctcgacgaccgtggcgcgtccagggagttcaagcaggtgatcacagacatcatggaggcagcggggagccccaacctgtccgacttctacccggcgatcgccgccgtcgacctgcagggctggcgccggcggtgcgcacggctgttcacgcagctgcaccggctgttcga
More
|
|||||||
| Protein seq | HRTLTKSRSNGDLDTWMVAMASRVSHLPLPRRHPCTLLPPPPAWTPPTSVHRQPPPARRPATPLARRPRQEVRPSHVAPPGCSHHGGRLLAGGRPRVRAEARRRLRGPVHPGLHRRPHQELRHLAEPRPAVARAPQDHGDGAVLAAPARRAPAAPAGEGGGARRPRRAAGARERRGGRRPRGVRHEPEPPLAHHLLARPDQPRRPWRVQGVQAGDHRHHGGSGEPQPVRLLPGDRRRRPAGLAPAVRTAVHAAAPAVR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr10 | 4479857 | 4483920 | + | OsCMeo_10g0003750.02 | OsCMeo_10g0003750.02,OsCMeo_10g0003750.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 23.350712 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0165300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g08319 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0165300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003870 | RBH | 0.0 | 5.509065 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0003830 | RBH | 0.0 | 0.737084 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0003830 | SBH | 0.225815 | 12.426895 | 1.417141 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0004060 | RBH | 0.0 | 0.464566 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003830 | RBH | 0.0 | 6.735984 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0077900 | RBH | 1.500302 | 0.1063475 | 0.0072665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0003950 | RBH | 0.0 | 0.540313 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0089900 | SBH | 0.4710745 | 14.4179645 | 0.369699 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0003790 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0003830 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003960 | RBH | 0.0 | 7.940605 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0003720 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0004050 | RBH | 0.0 | 6.439696 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003920 | RBH | 0.0 | 0.271264 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0003940 | RBH | 0.0 | 0.0 | 0.0 |
