Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os10g08319 OGI:10015810 | 16/16 Nipponbare | IRGSP 1.0 | MSU Chr10:4497746-4503667
Gene Symbol -
DNA seq

CACCGTACACTCACTAAAAGCCGTAGCAATGGCGACTTGGATTCTTGGATGGTTGCTATGGCTTCCCGTGTTTCTCATCTCCCTCTACCTCGTCGACATCCTTGCACACTCCTGCCGCCGCCTCCCGCCTGGACCCCGCCCACTTCCGTTCATCGGCAGCCTCCACCTGCTCGGCGACCAGCCACACCGCTCGCTCGCCGGCCTCGCCAAGAAGTACGGCCCTCTCATGTCGCTCCGCCTGGGTGCAGTCACCACGGTGGTCGTCTCCTCGCCGGAGGTCGCCCGCGAGTTCGTGCAGAAGCACGACGCCGTCTTCGCGGACCGGTCCATCCCGGACTCCATCGGCGACCACACCAAGAACTCCGTCATCTGGCTGAACCCCGGCCCGCGGTGGCGCGCGCTCCGCAGGATCATGGCGACGGAGCTGTTCTCGCCGCACCAGCTCGACGCGCTCCAGCAGCTCCGGCAGGAGAAGGTGGCGGAGCTCGTCGACCACGTCGCGCGGCTGGCGCGCGAGGGCGCCGCGGTGGACGTCGGCCGCGTGGCGTTCGCCACGAGCCTGAACCTCCTCTCGCGCACCATCTTCTCGCGCGACCTGACCAGCCTCGACGACCGTGGCGCGTCCAGGGAGTTCAAGCAGGTGATCACAGACATCATGGAGGCAGCGGGGAGCCCCAACCTGTCCGACTTCTACCCGGCGATCGCCGCCGTCGACCTGCAGGGCTGGCGCCGGCGGTGCGCACGGCTGTTCACGCAGCTGCACCGGCTGTTCGACGATGAGATGGACCATCGTAAGCTGCATAGCCGCCATGGTGGCCCTGGAGAGAATGGGAAGGAGAAGGACGACTTCCTGGAGGTGCTCCTGAGGCTCGGCGCGCGGGACGACGACATAGCAGGGCTTGACGGTGACACGCTCCGCTCGCTCTTCATTGTAAGTACTCTCTTCAGTTTGATAATTCGTGTTATTTTCAATAAAGATATGGTTTCCAAAGCATATATATGAGTGTGATTTTCTGTTATAACTAGGAAGAAAGGCCCCGCAGATGCGCAGACATCTTATTTACTGTTTTATGAAATAATGTTAAAATAAGTCATATCTCACCATTTATACGCTGTGAGATAGACCATAGACTTTAATATATTTAAGAATGCATGTTAGACTTAAAAAAACATCTTGTCCTAGTTCCATATAGATTCTTCTACAGTCACACAAACTTATTATCACTATTTTAAAAGTTGAGTAATATATGAAACTATATATGTTTATTTCCAAATCCATATATAAATATTCTAAAAACACCACTTCTACCGATTAATAGGATACACCATTAAAATTAAACCATTAAAGTTAAACATAAATGCTGGGTGAAGATAGTCATAGTCATCGAGACTTTCTTACTCTAGTGCCTTGAATGATGGGTCTCTCATTAAGATAGCCGTGCACGTGCTCTCTCGAGATCAACCTAGAGCACAATTTTAATGTCTAATTTACTATCACACCCTTATGTAGTATTGCATTGTCATACTGGCACCGCCTTAACTCAGTGTATATACGCCCCTGTTATACTTACGATAGCATAGCAAACACTGTTGTTTATGCTTGGTGACCCTAGGAAAGGACAAAGAAAAGATAAAGGTGATCGACATAGTTGTGTTTTGAATCGATTTGTGGTACAGAGTAGACACGGTATGCTTAAGATTTTGATCATTGCTACTCAAATTTTTATAGTATAGCTAGAATACTCTCATTCATAAAGAAGCAAGGTCCATCACCCGATGGTAGTTAAATAATTAGCCAAAGAGAGACATACCATCACAATAATCTCCAGAGCACTATTGTTTATATTTTGACAAATACCTATAGTTTAGCACCTGATTTGTTTTAACACCTACTGTTGGCAACAACATGATAAACCTTTACTAATTTAAATGATGTATTTATACTTCTAAACCTATTTATCAATTACGTAGTATATTTATCATGTCATATTTGACAAATATGAAATTATTTTAAAATTATAATTACATTAATTTTCATATATTAGCCCGAGATGTGGTGATGCATTTAGAATCGGAATACAAATTTTATTAGACACAAATATTTTATTTAAATAAAGGAATACAACAGGATCACAAATTGGATATATAATTTAAAAGATAACCGTTTCGAGATAATTGATTTTATATTTGATATTTATATTACCGATCTAATTTATATTTCTGCATATTTGTGGAGTAATATATATTTTATATGGTAAAAAGTTATATTTTAAAGACCATTGATTTTGTTCCAATGTACGTATGTTTTTTATTAAGTATGTTTCTTATTGGCTTTATCCTTTTTTATGGTAGGTACGTGCTTTTTTTTTCCTCATAATAGTTATATGTAACCTTTTTTCTCATTTTACATACGTACTTATGTTTTTTTGTTCTTTGACCATCGAGGTGCATACAGATCTACTAAGCACGCTATGTTTTATTTTAGCTTTTGTCGTACATACAGGAGAAAGGTATTATATATATAGAGAGATCTGATTTATTGTATAAAATTATGGGTCCACCATTTAAGTGAAAATCAACAGCATATATCTAATCTAACATTATAAAATAACGGGTCTACCAATTTAAATGAAAATCGATGGTGAGATTAAATTTTGTCACGTGGCATCCTAATAGCATTTGTATACAGATCTACTAAGCACGCTGTGTTTTATTTTATCTTTCGTCATATATACAGGAGAAAGGTATTATATATAGAGAGATCTGATTTATTGTATAAAATTACAGGTCCACCATTTAAGTGAAAATCAACAGTATATATCTAATCTAATATAATAACGGGTCCATCAATTTAAATAAAAAATTGACGGTGAGATTAAATTTTGCCACGTGGCATCCTAGGACCTATACATGTAATTCGAATACCTTCTAATTATACCATATTTTGTATGTTATTGATAGTCAGAGTTTGTAATAGTTTGACCTCAATATTGTCCATAATTTTTCTACTTATTAGCTGACAAAAATTTCCTCAAATCCCCGTTATATGTGCCTAGCTTTCGCATTCAATCCTCTAGTGAACAGAGTTCGAGCATGAAGGAGGGAGCCAGAATAACTCAACGGCAGTGGTTTTTTCTTTCTTGGGGAAGTGTGTGGACAGTGACACTGCTGGGGAAGCGCTCTTTAGTCCTATTTTGCAACCCTTTGTCCCGGGTTACAATCGGGACGCCTAATCCGGAACTAAAAAAGATGTCCAATTTTTAAGTCCTGGTTGGTGTTACCATTCGAGACTAGATTTAGAGATGATTTTGTCGATAATTTTGTGAATGATTTGGTGCTGCTTGCATCTATTGATTTCGAGCACCAATGTCGTCACCCCCAAATCCCCACAAATCATTCACCAAATCATCCACAAAATCATCCCTAAATCTACAAATATCTACAACAAAATCTACAAATCATTCACAAATTCTTAAAAAAAAACCACAAAGCCACAGCCGTTGTCGGCCGGCTGGCCGTGCACCGCCTCCTGGCCTCCCATCCCGCCGCCTCCGGGCCACCACCGCTGCTGGTTCCACCGGGCCGCCGCCCGGCTGCTGCGGCCGCTTCCACCGCCTCCACCTTCTGCGGCCTTGAGTGCCGCCACGGCCACTTCCGCCGGGCTGCCACCCGGCCTCCCCTCCCGTTGGATCTGGCAGAGGGGACGCCACCGCCCGCTAGCCGCCCGTCTGTCGCCTCTGCCTGCTGCTGCCTCATGTGCCGCCACGGTCGCTTCCGCCGGTCACTGCCTGGCCTCCCCTCCCATCGGATCTGGTGGAGGGAAGGCCGCCGCCCGCTGTCACCGTCGTCAGAGGAGGGGGGAGGGGGAGGAGGGAGGAGAGGAGGGGGAGAGGTTGAGAAAATAAGGGGAGGAGGAGATAAGGACAAGTCGCACGGCTCGAGGCAGCTGTTTGTGATTTTTTTTTTAATTTTGGTCCTGGTTGGTATAAACAACCAGGACTAAAGATAGATTTTTACTCCCGGTTAGTAACACCAACCGAGGCTAAAGAGAATGGCGGTCTGACATGTTTTTGGACCGGGAATAAAAATGATATTTAGTCTCGGTAGGTGTCACCGACTGGGAGTAAAGATCAAAAAGTTTCACTGGCTTTTTAACCGGGACTTAAAAATCTTTTTAGTTCTGGTTCCTATTGAAACTAGGACTAATGTGATTTTTTGCCAACCGGACAACTCTAGCAAATATGGCAAATTAAGTCGTTATGGATATGGGTGTTTGTGTTGGGGGGGGATTGATAGGAGTGTTGGGTGGAGGTCGGTCGGATTTAGACGAAGGTAATGGGAGGAGGAAGCCTAGCGATAGCTGGCAGCAATAACAGGGCGATACGACATTGATAGTTCTACCTCGACCACGTGTGGTTGAGTAGGTGGATAGTGTACTGGAATTAGAAGAGGGGATACTTGTCGGAGTGTAGGAGGGGGTGACGATGATTGATCCAATGAAAACCCTTCAAACAAAGGTTAGGAGATATGGGTCGGAAAGTGGGTAGTTGAGAAGTAGGAGTATGAAGATGGCTAGCCAGTGGGAGAGCACACTAGTGGGGCCCAATGAGTAGATGGGTGGCGGTACTCAGGGTCAGGTCGGGAAGGGTGACGGTGGTGCACATATGTGTGTGTGGCTGCACATCGTTTGGATCTGTTTGGAGACAGGGGAGGAGGGTGTATATACGAAGTTCGAAGTGATCGTAATTTACAAATAAATAAGGTGCGATTGACAAATAACCAACCCTTATTTATCTTTTTCAATTCCTAAAACATCTTAAATGTTGTGATGTAGAAGCAGGATTAGTTTTCATTATCTGAAGGATTATGTTTTGTTATTAACTGTCACCACCGTTTCATAGTATATCTATTATGTAGGACTTGTTTGCTGCTGGGAGTGACACAAGCTCTAGCACAATAGAATGGGCAATGGTGGAATTGCTTAAAAACACATTATCAATGGGTAAAGCCTGTGATGAGCTTGCCCAGGTTGTTGGATCAAGAAGAAGAATTGAAGAGTCTGAAATTGGTCAATTGCCATATTTGCAAGCTGTCATAAAAGAGACATTGAGATTACATCCACCGGTTCCACTGTTACCACATCGAGCTAAGATGGCGATGCAAATAATGGGTTATACAATACCTAATGGTACAAAAATATTGATAAATGTGTGGGCCATAGGTAGAGATAAAAACATTTGGACAGAACCTGAGAAGTTCATGCCAGAGAGATTCCTTGATAGAACAATTGACTTCAGAGGTGGAGATTTAGAGCTCATCCCATTTGGTGCAGGCCGTCGAATCTGCCCTGGAATGCCATTAGCTATTTGGATGGTGCATGTGGTTCTTGCATCACTATTAATTCATTTCAAATGGAGACTACCGGTTGAGGTGGAAAGAAATGGAATTGATATGACAGAGAAGTTTGGATTGACTCTAGTAAAAGCTATTCCGCTATGTGCTTTGGCCACACCAACTTAAGTCAACGAGCCACTGTTTGAGTTAGAATAATGGACTGCTCTTTGTCAACTCAAGCATTGTATCATGCACGGTATTATTGATGTGAAAATAAAAATACATCATCAATGAAATTTGTGGGTATTTACTACTTCCCAATGTTTATCAATAGTCCTGAGAAAATTACACAGCATATATTTGTATTAGAATAAACCCTCGTGGGGAAAAATGTAGAAATGTTAGATGTCAAAGTATACATGAAGTGAAGTGATATGTATGTCCTTCCTCATTATCTTGAGATTTGGGGAAAACTGTAGAAATGTTAGGTGTTAAAGTATACGTGAAGTGAAGTGAACTGTATGCCATTCCCCAACGCGAGATTTGGGTTGAATTTGCTAGTGTGCATAATTAAATATGGCAATGCAT

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CDS seq

ATGGCGACTTGGATTCTTGGATGGTTGCTATGGCTTCCCGTGTTTCTCATCTCCCTCTACCTCGTCGACATCCTTGCACACTCCTGCCGCCGCCTCCCGCCTGGACCCCGCCCACTTCCGTTCATCGGCAGCCTCCACCTGCTCGGCGACCAGCCACACCGCTCGCTCGCCGGCCTCGCCAAGAAGTACGGCCCTCTCATGTCGCTCCGCCTGGGTGCAGTCACCACGGTGGTCGTCTCCTCGCCGGAGGTCGCCCGCGAGTTCGTGCAGAAGCACGACGCCGTCTTCGCGGACCGGTCCATCCCGGACTCCATCGGCGACCACACCAAGAACTCCGTCATCTGGCTGAACCCCGGCCCGCGGTGGCGCGCGCTCCGCAGGATCATGGCGACGGAGCTGTTCTCGCCGCACCAGCTCGACGCGCTCCAGCAGCTCCGGCAGGAGAAGGTGGCGGAGCTCGTCGACCACGTCGCGCGGCTGGCGCGCGAGGGCGCCGCGGTGGACGTCGGCCGCGTGGCGTTCGCCACGAGCCTGAACCTCCTCTCGCGCACCATCTTCTCGCGCGACCTGACCAGCCTCGACGACCGTGGCGCGTCCAGGGAGTTCAAGCAGGTGATCACAGACATCATGGAGGCAGCGGGGAGCCCCAACCTGTCCGACTTCTACCCGGCGATCGCCGCCGTCGACCTGCAGGGCTGGCGCCGGCGGTGCGCACGGCTGTTCACGCAGCTGCACCGGCTGTTCGACGATGAGATGGACCATCGTAAGCTGCATAGCCGCCATGGTGGCCCTGGAGAGAATGGGAAGGAGAAGGACGACTTCCTGGAGGTGCTCCTGAGGCTCGGCGCGCGGGACGACGACATAGCAGGGCTTGACGGTGACACGCTCCGCTCGCTCTTCATTGACTTGTTTGCTGCTGGGAGTGACACAAGCTCTAGCACAATAGAATGGGCAATGGTGGAATTGCTTAAAAACACATTATCAATGGGTAAAGCCTGTGATGAGCTTGCCCAGGTTGTTGGATCAAGAAGAAGAATTGAAGAGTCTGAAATTGGTCAATTGCCATATTTGCAAGCTGTCATAAAAGAGACATTGAGATTACATCCACCGGTTCCACTGTTACCACATCGAGCTAAGATGGCGATGCAAATAATGGGTTATACAATACCTAATGGTACAAAAATATTGATAAATGTGTGGGCCATAGGTAGAGATAAAAACATTTGGACAGAACCTGAGAAGTTCATGCCAGAGAGATTCCTTGATAGAACAATTGACTTCAGAGGTGGAGATTTAGAGCTCATCCCATTTGGTGCAGGCCGTCGAATCTGCCCTGGAATGCCATTAGCTATTTGGATGGTGCATGTGGTTCTTGCATCACTATTAATTCATTTCAAATGGAGACTACCGGTTGAGGTGGAAAGAAATGGAATTGATATGACAGAGAAGTTTGGATTGACTCTAGTAAAAGCTATTCCGCTATGTGCTTTGGCCACACCAACTTAA

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Protein seq

MATWILGWLLWLPVFLISLYLVDILAHSCRRLPPGPRPLPFIGSLHLLGDQPHRSLAGLAKKYGPLMSLRLGAVTTVVVSSPEVAREFVQKHDAVFADRSIPDSIGDHTKNSVIWLNPGPRWRALRRIMATELFSPHQLDALQQLRQEKVAELVDHVARLAREGAAVDVGRVAFATSLNLLSRTIFSRDLTSLDDRGASREFKQVITDIMEAAGSPNLSDFYPAIAAVDLQGWRRRCARLFTQLHRLFDDEMDHRKLHSRHGGPGENGKEKDDFLEVLLRLGARDDDIAGLDGDTLRSLFIDLFAAGSDTSSSTIEWAMVELLKNTLSMGKACDELAQVVGSRRRIEESEIGQLPYLQAVIKETLRLHPPVPLLPHRAKMAMQIMGYTIPNGTKILINVWAIGRDKNIWTEPEKFMPERFLDRTIDFRGGDLELIPFGAGRRICPGMPLAIWMVHVVLASLLIHFKWRLPVEVERNGIDMTEKFGLTLVKAIPLCALATPT

Function Geraniol 8-hydroxylase [UniProtKB/Swiss-Prot:Q8VWZ7]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os10g08319 LOC_Os10g08319.1 Chr10 4497746 4503667 + MSU_osa1r7
CDS seq

ATGGCGACTTGGATTCTTGGATGGTTGCTATGGCTTCCCGTGTTTCTCATCTCCCTCTACCTCGTCGACATCCTTGCACACTCCTGCCGCCGCCTCCCGCCTGGACCCCGCCCACTTCCGTTCATCGGCAGCCTCCACCTGCTCGGCGACCAGCCACACCGCTCGCTCGCCGGCCTCGCCAAGAAGTACGGCCCTCTCATGTCGCTCCGCCTGGGTGCAGTCACCACGGTGGTCGTCTCCTCGCCGGAGGTCGCCCGCGAGTTCGTGCAGAAGCACGACGCCGTCTTCGCGGACCGGTCCATCCCGGACTCCATCGGCGACCACACCAAGAACTCCGTCATCTGGCTGAACCCCGGCCCGCGGTGGCGCGCGCTCCGCAGGATCATGGCGACGGAGCTGTTCTCGCCGCACCAGCTCGACGCGCTCCAGCAGCTCCGGCAGGAGAAGGTGGCGGAGCTCGTCGACCACGTCGCGCGGCTGGCGCGCGAGGGCGCCGCGGTGGACGTCGGCCGCGTGGCGTTCGCCACGAGCCTGAACCTCCTCTCGCGCACCATCTTCTCGCGCGACCTGACCAGCCTCGACGACCGTGGCGCGTCCAGGGAGTTCAAGCAGGTGATCACAGACATCATGGAGGCAGCGGGGAGCCCCAACCTGTCCGACTTCTACCCGGCGATCGCCGCCGTCGACCTGCAGGGCTGGCGCCGGCGGTGCGCACGGCTGTTCACGCAGCTGCACCGGCTGTTCGACGATGAGATGGACCATCGTAAGCTGCATAGCCGCCATGGTGGCCCTGGAGAGAATGGGAAGGAGAAGGACGACTTCCTGGAGGTGCTCCTGAGGCTCGGCGCGCGGGACGACGACATAGCAGGGCTTGACGGTGACACGCTCCGCTCGCTCTTCATTGACTTGTTTGCTGCTGGGAGTGACACAAGCTCTAGCACAATAGAATGGGCAATGGTGGAATTGCTTAAAAACACATTATCAATGGGTAAAGCCTGTGATGAGCTTGCCCAGGTTGTTGGATCAAGAAGAAGAATTGAAGAGTCTGAAATTGGTCAATTGCCATATTTGCAAGCTGTCATAAAAGAGACATTGAGATTACATCCACCGGTTCCACTGTTACCACATCGAGCTAAGATGGCGATGCAAATAATGGGTTATACAATACCTAATGGTACAAAAATATTGATAAATGTGTGGGCCATAGGTAGAGATAAAAACATTTGGACAGAACCTGAGAAGTTCATGCCAGAGAGATTCCTTGATAGAACAATTGACTTCAGAGGTGGAGATTTAGAGCTCATCCCATTTGGTGCAGGCCGTCGAATCTGCCCTGGAATGCCATTAGCTATTTGGATGGTGCATGTGGTTCTTGCATCACTATTAATTCATTTCAAATGGAGACTACCGGTTGAGGTGGAAAGAAATGGAATTGATATGACAGAGAAGTTTGGATTGACTCTAGTAAAAGCTATTCCGCTATGTGCTTTGGCCACACCAACTTAA

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Protein seq

MATWILGWLLWLPVFLISLYLVDILAHSCRRLPPGPRPLPFIGSLHLLGDQPHRSLAGLAKKYGPLMSLRLGAVTTVVVSSPEVAREFVQKHDAVFADRSIPDSIGDHTKNSVIWLNPGPRWRALRRIMATELFSPHQLDALQQLRQEKVAELVDHVARLAREGAAVDVGRVAFATSLNLLSRTIFSRDLTSLDDRGASREFKQVITDIMEAAGSPNLSDFYPAIAAVDLQGWRRRCARLFTQLHRLFDDEMDHRKLHSRHGGPGENGKEKDDFLEVLLRLGARDDDIAGLDGDTLRSLFIDLFAAGSDTSSSTIEWAMVELLKNTLSMGKACDELAQVVGSRRRIEESEIGQLPYLQAVIKETLRLHPPVPLLPHRAKMAMQIMGYTIPNGTKILINVWAIGRDKNIWTEPEKFMPERFLDRTIDFRGGDLELIPFGAGRRICPGMPLAIWMVHVVLASLLIHFKWRLPVEVERNGIDMTEKFGLTLVKAIPLCALATPT

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_10g0165300 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os10g08540 SBH 0.0 0.0 0.040972
Nipponbare | IRGSP 1.0 | RAP-db Os10g0165300 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_10g0003870 RBH 0.0 5.509065 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_10g0003830 RBH 0.0 0.737084 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_10g0003750 RBH 0.0 23.350712 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_10g0004060 RBH 0.0 0.464566 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_10g0003830 RBH 0.0 6.735984 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_10G0077900 RBH 1.500302 0.1063475 0.0072665
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_10g0003950 RBH 0.0 0.540313 0.000000
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_10G0085700 RBH 0.385589 0 0.0038825
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_10g0003790 RBH 0.0 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_10g0003830 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_10g0003960 RBH 0.0 7.940605 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_10g0003720 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_10g0004050 RBH 0.0 6.439696 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_10G003920 RBH 0.0 0.271264 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_10g0003940 RBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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