Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_09g0015860 | OGI:09056850 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr09:19526940-19530690 | ||||||||
| Gene Symbol | Os_F0789 | ||||||||||
| DNA seq | ttgtagtcacaacacatccaaccgaactccaggtcattcaaaatctatattttacagtacaactttacagcacagttacccactattagcagcccgctttgttgctgataaattactgaagaactaaacactcaccttttttttgaccaggaaaactgacaggcattcgcccaccagttatattttatatattataagaacaccacaaaagtcttacaaagattgtaaccaagaaagcatactccaactaaacttttaacgaccccaataatttagtaaacagagcgtggttcatcaaaaagttgcacaaaatgagcgtggacgcgtggttcacaaaatgataattgatgccctatagcgtttcattcactagcatccagaacacttaatctaacagtagagggaactttccctgcgatgtatttctggatagccgagagagctttaggcacttccttgagaataccaggactctgttcagaacgattagccaagccaaggttcgtgttcagagtaaggtgctcaagagatgctgcgttctcaagaatatgacatgttagctcaaccatgctcttcgcggagcagaaaccgttgatcgtcacactcttgaggtactcatatcggtgctccggaatctgcctcataagtgaggaacttccaaatatcgattcctgttctgcttgttgctaataatatacttgaattagtgctttcaccaaagtagatagttttgcaggatgaaatgaaaagtgaatagcatcttacagccaagaagaaagtctccaataaaggagaagcagcaagaaaggaaactagagagagataatcataagctggcgaattggtcaatccaatgagagaaatactcaagtacttcaggtaggggaatttggtaggtagcattggtgtgttgaacacctgcataaagatgtctcagattaaccaaactccaaggtatgagtactataatatggataacaaactagtctatataatcatctaaagtgttggtgtatacctcacggagcgaacctatggaaagagtttcaacatttggcatcatggatggaagagtggcacgggcataacggacaatgcgtgagctgcgcatatttagtttcttcacttgcaaccactctccaagtgaaagttttaccttgtttccagtaaagtaaaaactggatacatttggagctttgttctctataactcgcaccctgctgcattctgaaaccgtaatatagctgagctgctgcagtgtgcaaggtatcttcaggctaactatctcatcgcaatgcctgagttccatcccctcgagagccaacgaattcaaaagaaggcaccctaaatcatcctccgtgatacgcacaaaagacaaacatagccttttaaggcttctccatgaaccaggttcgattgtgggacagaaggcgcaatggccaagatcaagaatccgaatagaatctgccatcccatcagatagaagtgagcatgggaaattgtacttttgagcagttccatacagcgtaagagtgagttcttcgatcgctggtgtaatagcaaattgaagccaacgatcaacatggtcacagacatctagctcatacgggacttcaagcttgaatgtcttcacacaagtgcccgagtgtcttttaagaatgtggtcaactttgctgatgaaatctgtctcacaaacatgttcatccaatcccagcgtatccttgttaaaggtgaggtttggataacataaccaggaatttagaaaggcacgagacacacatgcaacacgagccgcatctcgcattggcatcaggcaatgtatacggcgccagatgtcctgcacacaccatcatgggataaagtttggatattgtgattgtgataaactttgattgggtgaaaaaacagaacaaaaccatatggggtatcattctatctctaccccaggtattcactcatgattgcacaagtacactgcatgacataggcatattgagcattagaatgtaattgtggtgcctaaattaagcattcgatataattgtttcgctctaacagtgtaattcgttgaaatataatttaggcaggccttctggcatggtgtcctaaaaattgtagcatgagtgaaatataagaatgaaatgcacattagtatgaaaatttccgacgaattcaagtaaatatccttcgtaggtaaatagtatatgagtcttgcttttggggggaaaagttctttctttagtagaatgaagatggaatgtgctcgatgtggaataggctaagaacaacttgcatctagaggattctggtaagaataaacagcaaatagtggacctagaccatggcataccaatgaaacaagcgtaacgggtgtactaatctgtgttggagcagtcatagtgatattcccttgaaatgtaaatcattcattttctatgtcatacctttgaaagcaacatccctgaatttttcattcttttagcaccctgagaatcatcatcttgttgggagggcgagaatttccttttacccaatttagcaattgatctatctgcaagcacatcatgcatggttatagttaattcaaacaataacagaaggaagcggacaaatcgaagcacacaaacaagcacagggaaatcaaaattttcttctgttatccagcttttgaatgccaattgagtttccaacttgtagcaatctaagagaaaagaacaattcatagtgcgcaggcgcaaaattttgtaaataccgcagtctccccaaagtgtgtatctcctgcactccaaagtatccaactgaacagcaatacattggagcagacgaatcagtgaaaaatcacatccttctttcccaatccctaaattccccactcctctcctcaccctcacaattcggtaaacccaagtcacaagtttcagctctggttgccatgttcagttaagtgccccatgctatgataggctgcatcactctttcaccaacgaatcaactatctcatgttgttataaaaaaaaaaaactatctccgtctcataaaaaaccaatcctattggatatgacacattttattactatgaatctggacatatagaatatatcacatcccatctagattcggtttttatgggacgggagggagtacatctcatacaatcccccccccccccccaatcatgagaaaataaattgtagattaaaatttgttcagaaagacgccagtttggatacctagcctactcaaacaaaaacaatgaggaacacttaatcttgttaccaaccaatgcactaggtttaaccccctgatgaaaagaaaacaggtttttttttaaagaaatcctacaaagaaacatactagcccggatagaaacaccatcacgggcatggccgctttgttgcaaaagaacaatctgaacaagttatataagccggaggaggaggccgagggagcttagcttacagcggtgtcggtttcgccggcggcgacggcgctgccgcctccgccgggtgggcatgacccggttcatctcgagcgttatccccatggccggcggcggcgacacccggaatcgaatcaactccgcgcggtcgccgtcgctcctactctccttctccgctgttctacttcgatctaatctatcgatctctcttgctatttattggcaaatcctgcgacgaggagggaggaggaggagatcgtgttggcgccgaacatcaggagtccaggatggcccaggggattatcattgctt
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| CDS seq | atggggataacgctcgagatgaaccgggtcatgcccacccggcggaggcggcagcgccgtcgccgccggcgaaaccgacaccgctatagatcaattgctaaattgggtaaaaggaaattctcgccctcccaacaagatgatgattctcagggtgctaaaagaatgaaaaattcagggatgttgctttcaaaggacatctggcgccgtatacattgcctgatgccaatgcgagatgcggctcgtgttgcatgtgtgtctcgtgcctttctaaattcctggttatgttatccaaacctcacctttaacaaggatacgctgggattggatgaacatgtttgtgagacagatttcatcagcaaagttgaccacattcttaaaagacactcgggcacttgtgtgaagacattcaagcttgaagtcccgtatgagctagatgtctgtgaccatgttgatcgttggcttcaatttgctattacaccagcgatcgaagaactcactcttacgctgtatggaactgctcaaaagtacaatttcccatgctcacttctatctgatgggatggcagattctattcggattcttgatcttggccattgcgccttctgtcccacaatcgaacctggttcatggagaagccttaaaaggctatgtttgtcttttgtgcgtatcacggaggatgatttagggtgccttcttttgaattcgttggctctcgaggggatggaactcaggcattgcgatgagatagttagcctgaagataccttgcacactgcagcagctcagctatattacggtttcagaatgcagcagggtgcgagttatagagaacaaagctccaaatgtatccagtttttactttactggaaacaaggtaaaactttcacttggagagtggttgcaagtgaagaaactaaatatgcgcagctcacgcattgtccgttatgcccgtgccactcttccatccatgatgccaaatgttgaaactctttccataggttcgctccgtgaggtgttcaacacaccaatgctacctaccaaattcccctacctgaagtacttgagtatttctctcattggattgaccaattcgccagcttatgattatctctctctagtttcctttcttgctgcttctcctttattggagactttcttcttggctcaacaagcagaacaggaatcgatatttggaagttcctcacttatgaggcagattccggagcaccgatatgagtacctcaagagtgtgacgatcaacggtttctgctccgcgaagagcatggttgagctaacatgtcatattcttgagaacgcagcatctcttgagcaccttactctgaacacgaaccttggcttggctaatcgttctgaacagagtcctggtattctcaaggaagtgcctaaagctctctcggctatccagaaatacatcgcagggaaagttccctctactgttagattaagtgttctggatgctagtgaatga
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| Protein seq | MGITLEMNRVMPTRRRRQRRRRRRNRHRYRSIAKLGKRKFSPSQQDDDSQGAKRMKNSGMLLSKDIWRRIHCLMPMRDAARVACVSRAFLNSWLCYPNLTFNKDTLGLDEHVCETDFISKVDHILKRHSGTCVKTFKLEVPYELDVCDHVDRWLQFAITPAIEELTLTLYGTAQKYNFPCSLLSDGMADSIRILDLGHCAFCPTIEPGSWRSLKRLCLSFVRITEDDLGCLLLNSLALEGMELRHCDEIVSLKIPCTLQQLSYITVSECSRVRVIENKAPNVSSFYFTGNKVKLSLGEWLQVKKLNMRSSRIVRYARATLPSMMPNVETLSIGSLREVFNTPMLPTKFPYLKYLSISLIGLTNSPAYDYLSLVSFLAASPLLETFFLAQQAEQESIFGSSSLMRQIPEHRYEYLKSVTINGFCSAKSMVELTCHILENAASLEHLTLNTNLGLANRSEQSPGILKEVPKALSAIQKYIAGKVPSTVRLSVLDASE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0015860 | OsCMeo_09g0015860.01 | Chr09 | 19526940 | 19530690 | - | NAM | ||
| CDS seq | atggggataacgctcgagatgaaccgggtcatgcccacccggcggaggcggcagcgccgtcgccgccggcgaaaccgacaccgctatagatcaattgctaaattgggtaaaaggaaattctcgccctcccaacaagatgatgattctcagggtgctaaaagaatgaaaaattcagggatgttgctttcaaaggacatctggcgccgtatacattgcctgatgccaatgcgagatgcggctcgtgttgcatgtgtgtctcgtgcctttctaaattcctggttatgttatccaaacctcacctttaacaaggatacgctgggattggatgaacatgtttgtgagacagatttcatcagcaaagttgaccacattcttaaaagacactcgggcacttgtgtgaagacattcaagcttgaagtcccgtatgagctagatgtctgtgaccatgttgatcgttggcttcaatttgctattacaccagcgatcgaagaactcactcttacgctgtatggaactgctcaaaagtacaatttcccatgctcacttctatctgatgggatggcagattctattcggattcttgatcttggccattgcgccttctgtcccacaatcgaacctggttcatggagaagccttaaaaggctatgtttgtcttttgtgcgtatcacggaggatgatttagggtgccttcttttgaattcgttggctctcgaggggatggaactcaggcattgcgatgagatagttagcctgaagataccttgcacactgcagcagctcagctatattacggtttcagaatgcagcagggtgcgagttatagagaacaaagctccaaatgtatccagtttttactttactggaaacaaggtaaaactttcacttggagagtggttgcaagtgaagaaactaaatatgcgcagctcacgcattgtccgttatgcccgtgccactcttccatccatgatgccaaatgttgaaactctttccataggttcgctccgtgaggtgttcaacacaccaatgctacctaccaaattcccctacctgaagtacttgagtatttctctcattggattgaccaattcgccagcttatgattatctctctctagtttcctttcttgctgcttctcctttattggagactttcttcttggctcaacaagcagaacaggaatcgatatttggaagttcctcacttatgaggcagattccggagcaccgatatgagtacctcaagagtgtgacgatcaacggtttctgctccgcgaagagcatggttgagctaacatgtcatattcttgagaacgcagcatctcttgagcaccttactctgaacacgaaccttggcttggctaatcgttctgaacagagtcctggtattctcaaggaagtgcctaaagctctctcggctatccagaaatacatcgcagggaaagttccctctactgttagattaagtgttctggatgctagtgaatga
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| Protein seq | MGITLEMNRVMPTRRRRQRRRRRRNRHRYRSIAKLGKRKFSPSQQDDDSQGAKRMKNSGMLLSKDIWRRIHCLMPMRDAARVACVSRAFLNSWLCYPNLTFNKDTLGLDEHVCETDFISKVDHILKRHSGTCVKTFKLEVPYELDVCDHVDRWLQFAITPAIEELTLTLYGTAQKYNFPCSLLSDGMADSIRILDLGHCAFCPTIEPGSWRSLKRLCLSFVRITEDDLGCLLLNSLALEGMELRHCDEIVSLKIPCTLQQLSYITVSECSRVRVIENKAPNVSSFYFTGNKVKLSLGEWLQVKKLNMRSSRIVRYARATLPSMMPNVETLSIGSLREVFNTPMLPTKFPYLKYLSISLIGLTNSPAYDYLSLVSFLAASPLLETFFLAQQAEQESIFGSSSLMRQIPEHRYEYLKSVTINGFCSAKSMVELTCHILENAASLEHLTLNTNLGLANRSEQSPGILKEVPKALSAIQKYIAGKVPSTVRLSVLDASE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.126060 | 4.234375 | 3.716488 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0502900 | RBH | 0.000000 | 0.525712 | 2.021904 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g32610 | RBH | 0.000000 | 0.323835 | 0.408528 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0502900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0015620 | SBH | 0.462841 | 1.751757 | 2.570502 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0015630 | RBH | 0.143939 | 0.418935 | 0.368326 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0007550 | SBH | 0.665011 | 3.113126 | 6.339255 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0015610 | RBH | 0.059847 | 0.106295 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0015750 | SBH | 5.578064 | 3.825436 | 14.007648 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0326200 | RBH | 5.3888455 | 3.126287 | 5.375338 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0015600 | SBH | 0.132849 | 0.072648 | 0.519741 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0315200 | SBH | 1.824517 | 0.802349 | 4.738747 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0015570 | SBH | 0.104130 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0015440 | SBH | 0.265119 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0015500 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0015360 | SBH | 0.143628 | 0.0 | 0.554072 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0015480 | SBH | 0.147261 | 0.690092 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G015880 | RBH | 0.122106 | 0.875533 | 1.501507 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0015670 | SBH | 0.489735 | 2.735040 | 3.352199 |
