Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_08g0013900 | OGI:08042210 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr08:17271642-17273322 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccctcccccactgctcgcctcgccaccgccaccgcctccgtcgaaccaccgctggcgcagggaggactcctcgcggcggactccgaaaccctagacactgcccccaacgccggtcacgccgtcctgtccgccgccgcgtcctcctcctccccatcacccgccaccaacgcctactcctccgtccacccaccaccgatgccgaatcctccacccacccgcaaccgatgccgaatcccccgccgtcgagtccgctccagatccccccgccgggccgactcctactcctcctcctccccgccgccaacgcctactcctcctccccggctccccccgccgccgatgcctactcctccgcgtcgccatcggctccaggttgtcgtcatcaggtggctcctaccgcggcgcccccacgccagcgccaccgccaccaatgccccatcctcctccccagtcgccgcatcacgcctccaccgccgacgcccccatcgccgccgtctcctcctgcctcatcacgtaggcgcgccctcgaccgatccccgccgccggaagccttcctcgccatgccacttccccaccccgcccaaccaccgcgccgcctcgctcctcccccatcgccgatcccacgtctccaaatcaccgtggaatccacgccccacaagcccacgacctcccaggtctacaagccggattcatcatcgacctcacctccgcaggccggctgcatcaaccccccacatcccggcctcccactagaccaccacccccatcccgcggcggcctccgtcgtcgactccgcttccccatgcgcagcccacgtccacgccaacagtccgtcgcctacgccacatctcgcgactggatccgctcctctccgttgatctccaccacggtccctttcgcgccgcaccggaagctggccgtcagtcctccggtcgtcgctggatgctgtcggcaggtggatgcagtactcgcccgtctcccctccatcactgagggacattcccatctacaaaaggtaaacaaaatttcttatatggcattcgattgctagacatcccccatctagaaaagttacaaatcaactaaagttcataaatttgttgagcaaatgtccagaaaccaattcacttttcaaagtgattttagcactgtactgctttgttcgagctgtaatcaaaatgtatgtgaaagtatcacttagacagtttcgttttaagtaaaagaaacagtttcctgttgaaggtatatctacaatgtgtatctgatttgtggacattatctgttttctcccttttcgtctcgctgcttcgtactgttgctatgttgtgaaatgatttctgtacaagtttctgcaggtacacttggcggcatcactaatttaactccgatttaatttacgcggaagcgtgctagggagcggtatgctgctcttagtgctggcgacaaggaagctaggcttcaaaagatgcgagagtactaccagcgaaaaaagagcattgatcctgtacctacccatggtatttaaattattatctcacaaacggcgtagatctgaagtgaaatcttgccactggacacaagctcactcttcttcaggacgtcaggttccttcatcacccgggtactcttccctactgtgaaagtaagaccagtttcttctgtttgtcctgtttttgcttga
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| CDS seq | atgccgaatcctccacccacccgcaaccgatgccgaatcccccgccgtcgagtccgctccagatccccccgccgggccgactcctactcctcctcctccccgccgccaacgcctactcctcctccccggctccccccgccgccgatgcctactcctccgcgtcgccatcggctccaggttgtcgtcatcaggtggctcctaccgcggcgcccccacgccagcgccaccgccaccaatgccccatcctcctccccagtcgccgcatcacgcctccaccgccgacgcccccatcgccgccgtctcctcctgcctcatcacgcgcgccctcgaccgatccccgccgccggaagccttcctcgccatgccacttccccaccccgcccaaccaccgcgccgcctcgctcctcccccatcgccgatcccacgtctccaaatcaccgtggaatccacgccccacaagcccacgacctcccaggtctacaagccggattcatcatcgacctcacctccgcaggccggctgcatcaaccccccacatcccggcctcccactagaccaccacccccatcccgcggcggcctccgtcgtcgactccgcttccccatgcgcagcccacgtccacgccaacagtccgtcgcctacgccacatctcgcgactggatccgctcctctccgttgatctccaccacggtccctttcgcgccgcaccggaagctggccgtcagtcctccggtcgtcgctggatgctgtcggcaggtggatgcagtactcgcccgtctcccctccatcactgagggacattcccatctacaaaagcgtgctagggagcgtgaaatcttgccactggacacaagctcactcttcttcaggacgtcaggttccttcatcacccgggtactcttccctactgtgaaagtaagaccagtttcttctgtttgtcctgtttttgcttga
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| Protein seq | MPNPPPTRNRCRIPRRRVRSRSPRRADSYSSSSPPPTPTPPPRLPPPPMPTPPRRHRLQVVVIRWLLPRRPHASATATNAPSSSPVAASRLHRRRPHRRRLLLPHHARPRPIPAAGSLPRHATSPPRPTTAPPRSSPIADPTSPNHRGIHAPQAHDLPGLQAGFIIDLTSAGRLHQPPTSRPPTRPPPPSRGGLRRRLRFPMRSPRPRQQSVAYATSRDWIRSSPLISTTVPFAPHRKLAVSPPVVAGCCRQVDAVLARLPSITEGHSHLQKRAREREILPLDTSSLFFRTSGSFITRVLFPTVKVRPVSSVCPVFA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0013900 | OsCMeo_08g0013900.01 | Chr08 | 17271642 | 17273322 | + | NAM | ||
| CDS seq | atgccgaatcctccacccacccgcaaccgatgccgaatcccccgccgtcgagtccgctccagatccccccgccgggccgactcctactcctcctcctccccgccgccaacgcctactcctcctccccggctccccccgccgccgatgcctactcctccgcgtcgccatcggctccaggttgtcgtcatcaggtggctcctaccgcggcgcccccacgccagcgccaccgccaccaatgccccatcctcctccccagtcgccgcatcacgcctccaccgccgacgcccccatcgccgccgtctcctcctgcctcatcacgcgcgccctcgaccgatccccgccgccggaagccttcctcgccatgccacttccccaccccgcccaaccaccgcgccgcctcgctcctcccccatcgccgatcccacgtctccaaatcaccgtggaatccacgccccacaagcccacgacctcccaggtctacaagccggattcatcatcgacctcacctccgcaggccggctgcatcaaccccccacatcccggcctcccactagaccaccacccccatcccgcggcggcctccgtcgtcgactccgcttccccatgcgcagcccacgtccacgccaacagtccgtcgcctacgccacatctcgcgactggatccgctcctctccgttgatctccaccacggtccctttcgcgccgcaccggaagctggccgtcagtcctccggtcgtcgctggatgctgtcggcaggtggatgcagtactcgcccgtctcccctccatcactgagggacattcccatctacaaaagcgtgctagggagcgtgaaatcttgccactggacacaagctcactcttcttcaggacgtcaggttccttcatcacccgggtactcttccctactgtgaaagtaagaccagtttcttctgtttgtcctgtttttgcttga
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| Protein seq | MPNPPPTRNRCRIPRRRVRSRSPRRADSYSSSSPPPTPTPPPRLPPPPMPTPPRRHRLQVVVIRWLLPRRPHASATATNAPSSSPVAASRLHRRRPHRRRLLLPHHARPRPIPAAGSLPRHATSPPRPTTAPPRSSPIADPTSPNHRGIHAPQAHDLPGLQAGFIIDLTSAGRLHQPPTSRPPTRPPPPSRGGLRRRLRFPMRSPRPRQQSVAYATSRDWIRSSPLISTTVPFAPHRKLAVSPPVVAGCCRQVDAVLARLPSITEGHSHLQKRAREREILPLDTSSLFFRTSGSFITRVLFPTVKVRPVSSVCPVFA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0013900 | OsCMeo_08g0013900.02 | Chr08 | 17271642 | 17273322 | + | NAM | ||
| CDS seq | atgccgaatcctccacccacccgcaaccgatgccgaatcccccgccgtcgagtccgctccagatccccccgccgggccgactcctactcctcctcctccccgccgccaacgcctactcctcctccccggctccccccgccgccgatgcctactcctccgcgtcgccatcggctccaggttgtcgtcatcaggtggctcctaccgcggcgcccccacgccagcgccaccgccaccaatgccccatcctcctccccagtcgccgcatcacgcctccaccgccgacgcccccatcgccgccgtctcctcctgcctcatcacgcgcgccctcgaccgatccccgccgccggaagccttcctcgccatgccacttccccaccccgcccaaccaccgcgccgcctcgctcctcccccatcgccgatcccacgtctccaaatcaccgtggaatccacgccccacaagcccacgacctcccaggtctacaagccggattcatcatcgacctcacctccgcaggccggctgcatcaaccccccacatcccggcctcccactagaccaccacccccatcccgcggcggcctccgtcgtcgactccgcttccccatgcgcagcccacgtccacgccaacagtccgtcgcctacgccacatctcgcgactggatccgctcctctccgttgatctccaccacggtccctttcgcgccgcaccggaagctggccgtcagtcctccggtcgtcgctggatgctgtcggcagtactcgcccgtctcccctccatcactgagggacattcccatctacaaaagtgaaatcttgccactggacacaagctcactcttcttcaggacgtcaggttccttcatcacccgggtactcttccctactgtgaaagtaagaccagtttcttctgtttgtcctgtttttgcttga
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| Protein seq | MPNPPPTRNRCRIPRRRVRSRSPRRADSYSSSSPPPTPTPPPRLPPPPMPTPPRRHRLQVVVIRWLLPRRPHASATATNAPSSSPVAASRLHRRRPHRRRLLLPHHARPRPIPAAGSLPRHATSPPRPTTAPPRSSPIADPTSPNHRGIHAPQAHDLPGLQAGFIIDLTSAGRLHQPPTSRPPTRPPPPSRGGLRRRLRFPMRSPRPRQQSVAYATSRDWIRSSPLISTTVPFAPHRKLAVSPPVVAGCCRQYSPVSPPSLRDIPIYKSEILPLDTSSLFFRTSGSFITRVLFPTVKVRPVSSVCPVFA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr08 | 17272159 | 17272656 | + | OsCMeo_08g0013900.01 | OsCMeo_08g0013900.02,OsCMeo_08g0013900.01 | All |
| SE | Chr08 | 17272656 | 17273199 | + | OsCMeo_08g0013900.01 | OsCMeo_08g0013900.02,OsCMeo_08g0013900.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.337443 | 0.0 | 1.602737 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0014030 | RBH | 0.000000 | 0.000000 | 2.175174 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0011810 | RBH | 0.705836 | 0.629561 | 3.477955 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011700 | RBH | 0.000000 | 0.000000 | 0.105734 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011370 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0011230 | RBH | 1.890638 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0012020 | SBH | 0.820128 | 0.313376 | 1.086167 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011310 | RBH | 0.468997 | 2.349677 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G013610 | RBH | 0.194224 | 0.000000 | 1.148331 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
