Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsCMeo_08g0003100 OGI:08006610 | 11/16 CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) Chr08:2538980-2541351
Gene Symbol -
DNA seq

TCAGCACAATCTACACTCTATTAATCCTCCCCAGGTCGTCTGTTTTTGCATGAAAACTGTGCATCATCTGCATTACCGTGCCAGAGATCGACGCCCAAGCTGCTTGATAGAACCCGGGCCCAAACCCATTCGGACCAGGGGCACTGTTCCTGTCCATTTGCCAGATTGCTGTCAGGATTTCAGCCTGAGTGAATTGTGTTATTAGCTGGTCTTGACCCCAGCTCAAATCTTGGTACAGATCAGAGAGATCGAAGTCCCAATGTGAGTTTGAAGACACACCTAGGATCGATTGATAGTAATCATGCATAACCGAAGCTTTGGACACATGATCAGCAACTTCCACACCCTGCACTTTGATTGATCGAAGGAAGGTTTTGCGGTGATTGGAGGCGTCATGGGCCTCAATCCCAAACTTGATTTTCCGGATTTTCCCTCGCTGCTTGCAGTATGCAGCTTTTTGTATTTGCAGCGTTGTGAATTTATTCTGTATCAAGTGTCTCAGACGAAATTCCGCTGGGGTCAGGACTCTCGATTCTTCCTTGATATCAAGCAAATCGATGACGAACTTGCAGTATTAAGTTGCATGAACCAGCCAGTTGCACCTAAAAGCCTAAGCTGATAGGGAAAGACGGGCAATTCACTTTATACACTCCAACATGCAGTCCTCTTCTGTGCCATTCTTATGCTTGTTAGTCTTTGCCCAGTTCTTAATGTTTTGCCGAGTTTTCTTCAGCTGAGCTGCAAGCACAGCCACCCCATCATTTGAATTCTGGTCAGCCCCCCAGGTTGCAAGGGCCGCCGGGAGGAAGGATGGATTAAGGAGGTAGGAGTTTTCGAAGCGGAAGAGTTTTGGTTTTGGGACGCAGGTGGAGGCTGAAACAACAAGCGGCACATGGTCGGAGGTAGTGCGAGTATTGGTTTTCAAGTGAGTCATCGGCAAAGCATTATTCCAGGCAAGATTAATGAAAGCTCGGTCTAGGCGTGCTAGGATAGGGGAATCCCTCTTATTTGACCAGGTATACAATCTATCCAAAAGAGGAAGCTCTAAGAGAGAGAGCTGATCAATTGTTTCATTAAATTTCGAGGCAAGAGAAGCGCGAAAGTTGTCATTGTTCTTTTCTGCGGGGGAGCGGATCAGGTTGAAGTCTCCAATAAGAAGCTAAGGACCAGGAATGTGAGTACTAAGATCAACAAGCTCGGCCAGGAAGTCATCATTGAAAGCATGATCGGAAGGGGCGTAGACATTGGTAACAGTGAAAGACAGGTTAACAAGAGAGTATTCAAAAGTAATCGAAAGAGTGTGGTGCCTCGAAATGTAAGAAGTTTTCACGAGGAAGGAGCTGTCCCAAGCAGTAACAAGCCCTCCGCGAGAGCCATAAGAGCCAATTGACATGAAATCATTAAGATAACTAGGAAGAAAAGCATGAGCTTTCCCAGGATTAACATTGGCAAGCTTAGTCTCTTGCAACAGAGCAAGAACAGGCCTTTCACAAAAGATATCAGAGCTAACGACATTACACTTAGACTGATCACCTAATCCTCTAACATTCCAGGATAGGATAGAAAGGCTGCGAGAATTAGATGACATTAGGAACCGTATTGGCACCAGGACAACTTAGATATAGGGAGGCGGAACAGCTAATGGGGAAAGGGAAGGACAGCAAAATAACCCAACCCCAGACACGTCTCAGTCTAGGCCACTCCATTGGAGACCTCAGCGAGCACCATGTTGAGCTGAAGGACGTCATGGTCATCCAAACCACAGGTGACAGCAAGATCTTTGAGTGCTTCCGGTGTGGTGGCCGAGTCGAAGTCAAGAAGCTTGTGTTGGGCAACCACCTGATTGAGCTTAACTGATCATTTAGCGAGTTGTTCTTTAAGCTTTTTCAGCCTGGCTGTTTTACCAGCGACTGTCTGAAAGGCACCAGCTTCTTTTGCTGCAAGACGCTCGCTCTGTCGGTGCTTCACAATTTCCTGGGTAGCTCTCTTCTTTCCACCTCTCGCTTTCCTGACGGAGAAGGTCTGATCTGGCTCGTTGTCCACTGATGAGGGATCCTAAGTATACGCAGTGTCAGGTTCATCATGCAGCTCAGTGATCCTAACCGAAGTTCCAGACGTTTTGGTCCCAACAGCCAGCTGTCCCATAAGTTGAAGTTGTTGGCATTGTTGTTGTTCCCCCCACCCTGATTCTGTTGTATGTTGATGTTGAGCGGGGGAGCTTGGGTGAAATGTCTGCCCAGATTGGGGACAACCAGAATAGGGAAGTGGTGAGTGTAGCTGCCATTTTCATCGAAATTCTCACTGGCATCCCAAGTACGGATTATCCTGATCTTTGCAACTGCAATATCTCCATTGCGGAGCCAGATGAACAT

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CDS seq

ATGTTCATCTGGCTCCGCAATGGAGATATTGCAGTTGCAAAGATCAGGATAATCCGTACTTGGGATGCCAGGTGGGGGGAACAACAACAATGCCAACAACTTCAACTTATGGGACAGCTGGCTGTTGGGACCAAAACGTCTGGAACTTCGGATCCCTCATCAGTGGACAACGAGCCAGATCAGACCTTCTCCGTCAGGAAAGCGAGAGGTGGAAAGAAGAGAGCTACCCAGGAAATTGTGAAGCACCGACAGAGCGAGCGTCTTGCAGCAAAAGAAGCTGGTGCCTTTCAGACAGTCGCTGTTAAGCTCAATCAGGTGGTTGCCCAACACAAGCTTCTTGACTTCGACTCGGCCACCACACCGGAAGCACTCAAAGATCTTGCTGTCACCTGTGGTTTGGATGACCATGACGTCCTTCAGCTCAACATGGTGCTCGCTGAGAATAAATTCACAACGCTGCAAATACAAAAAGCTGCATACTGCAAGCAGCGAGGGAAAATCCGGAAAATCAAGTTTGGGATTGAGGCCCATGACGCCTCCAATCACCGCAAAACCTTCCTTCGATCAATCAAAGTGCAGGGTGTGGAAGTTGCTGATCATGTGTCCAAAGCTTCGGTTATGCATGATTACTATCAATCGATCCTAGGTGTGTCTTCAAACTCACATTGGGACTTCGATCTCTCTGATCTGTACCAAGATTTGAGCTGGGGTCAAGACCAGCTAATAACACAATTCACTCAGGCTGAAATCCTGACAGCAATCTGGCAAATGGACAGGAACAGTGCCCCTGGTCCGAATGGGTTTGGGCCCGGGTTCTATCAAGCAGCTTGGGCGTCGATCTCTGGCACGGTAATGCAGATGATGCACAGTTTTCATGCAAAAACAGACGACCTGGGGAGGATTAATAGAGTGTAG

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Protein seq

MFIWLRNGDIAVAKIRIIRTWDARWGEQQQCQQLQLMGQLAVGTKTSGTSDPSSVDNEPDQTFSVRKARGGKKRATQEIVKHRQSERLAAKEAGAFQTVAVKLNQVVAQHKLLDFDSATTPEALKDLAVTCGLDDHDVLQLNMVLAENKFTTLQIQKAAYCKQRGKIRKIKFGIEAHDASNHRKTFLRSIKVQGVEVADHVSKASVMHDYYQSILGVSSNSHWDFDLSDLYQDLSWGQDQLITQFTQAEILTAIWQMDRNSAPGPNGFGPGFYQAAWASISGTVMQMMHSFHAKTDDLGRINRV

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsCMeo_08g0003100 OsCMeo_08g0003100.01 Chr08 2538980 2541351 - NAM
CDS seq

ATGTTCATCTGGCTCCGCAATGGAGATATTGCAGTTGCAAAGATCAGGATAATCCGTACTTGGGATGCCAGGTGGGGGGAACAACAACAATGCCAACAACTTCAACTTATGGGACAGCTGGCTGTTGGGACCAAAACGTCTGGAACTTCGGATCCCTCATCAGTGGACAACGAGCCAGATCAGACCTTCTCCGTCAGGAAAGCGAGAGGTGGAAAGAAGAGAGCTACCCAGGAAATTGTGAAGCACCGACAGAGCGAGCGTCTTGCAGCAAAAGAAGCTGGTGCCTTTCAGACAGTCGCTGTTAAGCTCAATCAGGTGGTTGCCCAACACAAGCTTCTTGACTTCGACTCGGCCACCACACCGGAAGCACTCAAAGATCTTGCTGTCACCTGTGGTTTGGATGACCATGACGTCCTTCAGCTCAACATGGTGCTCGCTGAGAATAAATTCACAACGCTGCAAATACAAAAAGCTGCATACTGCAAGCAGCGAGGGAAAATCCGGAAAATCAAGTTTGGGATTGAGGCCCATGACGCCTCCAATCACCGCAAAACCTTCCTTCGATCAATCAAAGTGCAGGGTGTGGAAGTTGCTGATCATGTGTCCAAAGCTTCGGTTATGCATGATTACTATCAATCGATCCTAGGTGTGTCTTCAAACTCACATTGGGACTTCGATCTCTCTGATCTGTACCAAGATTTGAGCTGGGGTCAAGACCAGCTAATAACACAATTCACTCAGGCTGAAATCCTGACAGCAATCTGGCAAATGGACAGGAACAGTGCCCCTGGTCCGAATGGGTTTGGGCCCGGGTTCTATCAAGCAGCTTGGGCGTCGATCTCTGGCACGGTAATGCAGATGATGCACAGTTTTCATGCAAAAACAGACGACCTGGGGAGGATTAATAGAGTGTAG

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Protein seq

MFIWLRNGDIAVAKIRIIRTWDARWGEQQQCQQLQLMGQLAVGTKTSGTSDPSSVDNEPDQTFSVRKARGGKKRATQEIVKHRQSERLAAKEAGAFQTVAVKLNQVVAQHKLLDFDSATTPEALKDLAVTCGLDDHDVLQLNMVLAENKFTTLQIQKAAYCKQRGKIRKIKFGIEAHDASNHRKTFLRSIKVQGVEVADHVSKASVMHDYYQSILGVSSNSHWDFDLSDLYQDLSWGQDQLITQFTQAEILTAIWQMDRNSAPGPNGFGPGFYQAAWASISGTVMQMMHSFHAKTDDLGRINRV

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os08g04980 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_08g0003050 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_08g0003130 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_08g0003090 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_08g0002880 RBH 0.000000 0.000000 6.083709
Minghui 63 | MH63RS3 | HZAU OsMH63_08G0038000 RBH 0 0.0593795 0.035116
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_08g0002760 RBH 0.029878 0.000000 0.850285
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_08G0043000 RBH 1.9168575 13.4713995 8.7965695
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_08g0002930 RBH 0.430198 0.000000 0.233529
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_08g0002850 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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