Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g04980 | OGI:08006610 | 11/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:2552268-2556118 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAAAAATTGAGGGTAAAATCACAATTGAGATTGAAAGTTGGGGCATAAACACAATTCTCCCTTTTTTTTCTATCGAGTGAGTATACAGAGACCTGAATTTGTCAGCCAACACAGCATCGCCACACTAGTGGTCATGCCAGAAAGAGGTTCGTTGGCCATCTCCAATTTGAACTGAGGTATGTTTATGAAGAATTGGCAGCAGGGACATCATGGAGTCCCAATGTGCTCCGAGTATGTTATGAACAGCTAGGTTCAAGTTGAGATGTTCCCCACATATCCATGAAGCCCAGGAAGAGTGATCAGTGTGGAGGTGGTGTAATCTCTTTACCAGGAGAGCTGTATTTTGCTTGTCGATGTTTTTGACCCCCAGCCCTCCTACGCTCTTAGGCATACAGACAGAATCCCAAGCCACTAAACATCTGGCCCCGCTGACTGTGTCTTCCCCCGCCCATAGGAAAGCTCGTCTTTTTTTGTTTAGATCCTCGATAACTCCCTTGGGCAACCTGAGGGCAGACATGGCGTAGACAGGGATAGTATCCAGGACAGCATTGATAAGAATCAATCTTTCAGCATAGGAGAGGAGGCGGACCTGCCAGCTAGCGAGGTGTTTGTCAGCTCGAGAGATCATAGGTTGGAGTTCACATTTCCTAACTTTCGCTGGTGTGAGAAGCAGTCCCAGATAGGACATGGGAAAGGCCTCAAGTTTGCATTGCATGATCTGTGCTAGTTGATCTGTAATCTCCGCCGGAGTATGCATCGTGATCGCTTTTGGAGAAATTGATCTTCAGTCCAGTTGCTAGCGCAAAGCGGTCTAAGCAGCTTTTCAGTTCTTGAATGTCACTAGCAGCAGCTTTTGCAACAATGATTGTGTCGTCAGCATACTGTAGCGTGGCGCAAGATCTGTTCTAATAGACAGGGTGCCTAATCCCAGATTTTTGAATGAGTTTTTGCAGAACATCTGCCACTAGGATGAATAAGTATGGCGACAGCGGATCCCCTTGTCGGACCCCCTGCTTGCAGTCAATCCAGTTTCCAAGGACTCCATTAATTAAGACAGCAGACTTAGAGGGTTTGGAGGAGGGTGGAGATCCAAGAGCACCACAAATCCGGGAAGCCCCTGACCTGAAGAATTGCAGGAAGGCTGGACCAAGTTACGGAGTCAAAAGCTTTAGCGAAGTCCAACTTGATCACTGCCGTTGGGAGCTTACGCTTGTGACAACATTGAATAAGCTCAGTTGCATATATGAAGTTTTCCGAGATACTTCTCCCCGTCAAGAAACTTGTTTGGTCGCCGTCAATTAGCATAGGGAGAAACTTTTGCAGCCGATTTGTAAACGGCTTGGCAATGATCTTAACAGAGCAATTTTGCAAGGAAATGGGTCTATAGCCGTCCGGCGTATTTGTTTTGCCGGGTTTAGGGATCAGCACAATCTACACTCTATTAATCCTCCCCAGGTCGTCTGTTTTTGCATGAAAACTGTGCATCATCTGCATTACCGTGCCAGAGATCGACGCCCAAGCTGCTTGATAGAACCCGGGCCCAAACCCATTCGGACCAGGGGCACTGTTCCTGTCCATTTGCCAGATTGCTGTCAGGATTTCAGCCTGAGTGAATTGTGTTATTAGCTGGTCTTGACCCCAGCTCAAATCTTGGTACAGATCAGAGAGATCGAAGTCCCAATGTGAGTTTGAAGACACACCTAGGATCGATTGATAGTAATCATGCATAACCGAAGCTTTGGACACATGATCAGCAACTTCCACACCCTGCACTTTGATTGATCGAAGGAAGGTTTTGCGGTGATTGGAGGCGTCATGGGCCTCAATCCCAAACTTGATTTTCCGGATTTTCCCTCGCTGCTTGCAGTATGCAGCTTTTTGTATTTGCAGCGTTGTGAATTTATTCTGTATCAAGTGTCTCAGACGAAATTCCGCTGGGGTCAGGACTCTCGATTCTTCCTTGATATCAAGCAAATCGATGACGAACTTGCAGTATTAAGTTGCATGAACCAGCCAGTTGCACCTAAAAGCCTAAGCTGATAGGGAAAGACGGGCAATTCACTTTATACACTCCAACATGCAGTCCTCTTCTGTGCCATTCTTATGCTTGTTAGTCTTTGCCCAGTTCTTAATGTTTTGCCGAGTTTTCTTCAGCTGAGCTGCAAGCACAGCCACCCCATCATTTGAATTCTGGTCAGCCCCCCAGGTTGCAAGGGCCGCCGGGAGGAAGGATGGATTAAGGAGGTAGGAGTTTTCGAAGCGGAAGAGTTTTGGTTTTGGGACGCAGGTGGAGGCTGAAACAACAAGCGGCACATGGTCGGAGGTAGTGCGAGTATTGGTTTTCAAGTGAGTCATCGGCAAAGCATTATTCCAGGCAAGATTAATGAAAGCTCGGTCTAGGCGTGCTAGGATAGGGGAATCCCTCTTATTTGACCAGGTATACAATCTATCCAAAAGAGGAAGCTCTAAGAGAGAGAGCTGATCAATTGTTTCATTAAATTTCGAGGCAAGAGAAGCGCGAAAGTTGTCATTGTTCTTTTCTGCGGGGGAGCGGATCAGGTTGAAGTCTCCAATAAGAAGCTAAGGACCAGGAATGTGAGTACTAAGATCAACAAGCTCGGCCAGGAAGTCATCATTGAAAGCATGATCGGAAGGGGCGTAGACATTGGTAACAGTGAAAGACAGGTTAACAAGAGAGTATTCAAAAGTAATCGAAAGAGTGTGGTGCCTCGAAATGTAAGAAGTTTTCACGAGGAAGGAGCTGTCCCAAGCAGTAACAAGCCCTCCGCGAGAGCCATAAGAGCCAATTGACATGAAATCATTAAGATAACTAGGAAGAAAAGCATGAGCTTTCCCAGGATTAACATTGGCAAGCTTAGTCTCTTGCAACAGAGCAAGAACAGGCCTTTCACAAAAGATATCAGAGCTAACGACATTACACTTAGACTGATCACCTAATCCTCTAACATTCCAGGATAGGATAGAAAGGCTGCGAGAATTAGATGACATTAGGAACCGTATTGGCACCAGGACAACTTAGATATAGGGAGGCGGAACAGCTAATGGGGAAAGGGAAGGACAGCAAAATAACCCAACCCCAGACACGTCTCAGTCTAGGCCACTCCATTGGAGACCTCAGCGAGCACCATGTTGAGCTGAAGGACGTCATGGTCATCCAAACCACAGGTGACAGCAAGATCTTTGAGTGCTTCCGGTGTGGTGGCCGAGTCGAAGTCAAGAAGCTTGTGTTGGGCAACCACCTGATTGAGCTTAACTGATCATTTAGCGAGTTGTTCTTTAAGCTTTTTCAGCCTGGCTGTTTTACCAGCGACTGTCTGAAAGGCACCAGCTTCTTTTGCTGCAAGACGCTCGCTCTGTCGGTGCTTCACAATTTCCTGGGTAGCTCTCTTCTTTCCACCTCTCGCTTTCCTGACGGAGAAGGTCTGATCTGGCTCGTTGTCCACTGATGAGGGATCCTAAGTATACGCAGTGTCAGGTTCATCATGCAGCTCAGTGATCCTAACCGAAGTTCCAGACGTTTTGGTCCCAACAGCCAGCTGTCCCATAAGTTGAAGTTGTTGGCATTGTTGTTGTTCCCCCCACCCTGATTCTGTTGTATGTTGATGTTGAGCGGGGGAGCTTGGGTGAAATGTCTGCCCAGATTGGGGACAACCAGAATAGGGAAGTGGTGAGTGTAGCTGCCATTTTCATCGAAATTCTCACTGGCATCCCAAGTACGGATTATCCTGATCTTTGCAACTGCAATATCTCCATTGCGGAGCCAGATGAACATTGCTGGCAGGGCCGGTTGGCCGGGGTATTGCTGGACAACCATGCGCAGAGACGACAT
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| CDS seq | ATGTCGTCTCTGCGCATGGTTGTCCAGCAATACCCCGGCCAACCGGCCCTGCCAGCAATGTTCATCTGGCTCCGCAATGGAGATATTGCAGTTGCAAAGATCAGGATAATCCGTACTTGGGATGCCAAATCAGGGTGGGGGGAACAACAACAATGCCAACAACTTCAACTTATGGGACAGCTGGCTGTTGGGACCAAAACGTCTGGAACTTCGGATCCCTCATCAGTGGACAACGAGCCAGATCAGACCTTCTCCGTCAGGAAAGCGAGAGGTGGAAAGAAGAGAGCTACCCAGGAAATTGTGAAGCACCGACAGAGCGAGCGTCTTGCAGCAAAAGAAGCTGGTGCCTTTCAGACAGTCGCTGTTAAGCTCAATCAGGTGGTTGCCCAACACAAGCTTCTTGACTTCGACTCGGCCACCACACCGGAAGCACTCAAAGATCTTGCTGTCACCTGTGGTTTGGATGACCATGACGTCCTTCAGCTCAACATGGTGCTCGCTGAGGAAGAATCGAGAGTCCTGACCCCAGCGGAATTTCGTCTGAGACACTTGATACAGAATAAATTCACAACGCTGCAAATACAAAAAGCTGCATACTGCAAGCAGCGAGGGAAAATCCGGAAAATCAAGTTTGGGATTGAGGCCCATGACGCCTCCAATCACCGCAAAACCTTCCTTCGATCAATCAAAGTGCAGGGTGTGGAAGTTGCTGATCATGTGTCCAAAGCTTCGGTTATGCATGATTACTATCAATCGATCCTAGGTGTGTCTTCAAACTCACATTGGGACTTCGATCTCTCTGATCTGTACCAAGATTTGAGCTGGGGTCAAGACCAGCTAATAACACAATTCACTCAGGCTGAAATCCTGACAGCAATCTGGCAAATGGACAGGAACAGTGCCCCTGGTCCGAATGGGTTTGGGCCCGGGTTCTATCAAGCAGCTTGGGCGTCGATCTCTGGCACGCGTAAGCTCCCAACGGCAGTGATCAAGTTGGACTTCGCTAAAGCTTTTGACTCCGTAACTTGGTCCAGCCTTCCTGCAATTCTTCAGGTCCGCCTCCTCTCCTATGCTGAAAGATTGATTCTTATCAATGCTGTCCTGGATACTATCCCTGTCTACGCCATGTCTGCCCTCAGGTTGCCCAAGGGAGTTATCGAGGATCTAAACAAAAAAAGACGAGCTTTCCTATGGGCGGGGGAAGACACAGTCAGCGGGGCCAGATGTTTAGTGGCTTGGGATTCTGTCTGTATGCCTAAGAGCGTAGGAGGGCTGGGGGTCAAAAACATCGACAAGCAAAATACAGCTCTCCTGGTCTCTGTATACTCACTCGATAGAAAAAAAAGGGAGAATTGTGTTTATGCCCCAACTTTCAATCTCAATTGTGATTTTACCCTCAATTTTTAG
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| Protein seq | MSSLRMVVQQYPGQPALPAMFIWLRNGDIAVAKIRIIRTWDAKSGWGEQQQCQQLQLMGQLAVGTKTSGTSDPSSVDNEPDQTFSVRKARGGKKRATQEIVKHRQSERLAAKEAGAFQTVAVKLNQVVAQHKLLDFDSATTPEALKDLAVTCGLDDHDVLQLNMVLAEEESRVLTPAEFRLRHLIQNKFTTLQIQKAAYCKQRGKIRKIKFGIEAHDASNHRKTFLRSIKVQGVEVADHVSKASVMHDYYQSILGVSSNSHWDFDLSDLYQDLSWGQDQLITQFTQAEILTAIWQMDRNSAPGPNGFGPGFYQAAWASISGTRKLPTAVIKLDFAKAFDSVTWSSLPAILQVRLLSYAERLILINAVLDTIPVYAMSALRLPKGVIEDLNKKRRAFLWAGEDTVSGARCLVAWDSVCMPKSVGGLGVKNIDKQNTALLVSVYSLDRKKRENCVYAPTFNLNCDFTLNF |
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| Function | Putative ribonuclease H protein At1g65750 [UniProtKB/Swiss-Prot:P0C2F6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g04980 | LOC_Os08g04980.1 | Chr08 | 2552268 | 2556118 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCGTCTCTGCGCATGGTTGTCCAGCAATACCCCGGCCAACCGGCCCTGCCAGCAATGTTCATCTGGCTCCGCAATGGAGATATTGCAGTTGCAAAGATCAGGATAATCCGTACTTGGGATGCCAAATCAGGGTGGGGGGAACAACAACAATGCCAACAACTTCAACTTATGGGACAGCTGGCTGTTGGGACCAAAACGTCTGGAACTTCGGATCCCTCATCAGTGGACAACGAGCCAGATCAGACCTTCTCCGTCAGGAAAGCGAGAGGTGGAAAGAAGAGAGCTACCCAGGAAATTGTGAAGCACCGACAGAGCGAGCGTCTTGCAGCAAAAGAAGCTGGTGCCTTTCAGACAGTCGCTGTTAAGCTCAATCAGGTGGTTGCCCAACACAAGCTTCTTGACTTCGACTCGGCCACCACACCGGAAGCACTCAAAGATCTTGCTGTCACCTGTGGTTTGGATGACCATGACGTCCTTCAGCTCAACATGGTGCTCGCTGAGGAAGAATCGAGAGTCCTGACCCCAGCGGAATTTCGTCTGAGACACTTGATACAGAATAAATTCACAACGCTGCAAATACAAAAAGCTGCATACTGCAAGCAGCGAGGGAAAATCCGGAAAATCAAGTTTGGGATTGAGGCCCATGACGCCTCCAATCACCGCAAAACCTTCCTTCGATCAATCAAAGTGCAGGGTGTGGAAGTTGCTGATCATGTGTCCAAAGCTTCGGTTATGCATGATTACTATCAATCGATCCTAGGTGTGTCTTCAAACTCACATTGGGACTTCGATCTCTCTGATCTGTACCAAGATTTGAGCTGGGGTCAAGACCAGCTAATAACACAATTCACTCAGGCTGAAATCCTGACAGCAATCTGGCAAATGGACAGGAACAGTGCCCCTGGTCCGAATGGGTTTGGGCCCGGGTTCTATCAAGCAGCTTGGGCGTCGATCTCTGGCACGCGTAAGCTCCCAACGGCAGTGATCAAGTTGGACTTCGCTAAAGCTTTTGACTCCGTAACTTGGTCCAGCCTTCCTGCAATTCTTCAGGTCCGCCTCCTCTCCTATGCTGAAAGATTGATTCTTATCAATGCTGTCCTGGATACTATCCCTGTCTACGCCATGTCTGCCCTCAGGTTGCCCAAGGGAGTTATCGAGGATCTAAACAAAAAAAGACGAGCTTTCCTATGGGCGGGGGAAGACACAGTCAGCGGGGCCAGATGTTTAGTGGCTTGGGATTCTGTCTGTATGCCTAAGAGCGTAGGAGGGCTGGGGGTCAAAAACATCGACAAGCAAAATACAGCTCTCCTGGTCTCTGTATACTCACTCGATAGAAAAAAAAGGGAGAATTGTGTTTATGCCCCAACTTTCAATCTCAATTGTGATTTTACCCTCAATTTTTAG
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| Protein seq | MSSLRMVVQQYPGQPALPAMFIWLRNGDIAVAKIRIIRTWDAKSGWGEQQQCQQLQLMGQLAVGTKTSGTSDPSSVDNEPDQTFSVRKARGGKKRATQEIVKHRQSERLAAKEAGAFQTVAVKLNQVVAQHKLLDFDSATTPEALKDLAVTCGLDDHDVLQLNMVLAEEESRVLTPAEFRLRHLIQNKFTTLQIQKAAYCKQRGKIRKIKFGIEAHDASNHRKTFLRSIKVQGVEVADHVSKASVMHDYYQSILGVSSNSHWDFDLSDLYQDLSWGQDQLITQFTQAEILTAIWQMDRNSAPGPNGFGPGFYQAAWASISGTRKLPTAVIKLDFAKAFDSVTWSSLPAILQVRLLSYAERLILINAVLDTIPVYAMSALRLPKGVIEDLNKKRRAFLWAGEDTVSGARCLVAWDSVCMPKSVGGLGVKNIDKQNTALLVSVYSLDRKKRENCVYAPTFNLNCDFTLNF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003050 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003130 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003100 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003090 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0002880 | RBH | 0.000000 | 0.000000 | 6.083709 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0038100 | RBH | 0 | 0.0630115 | 0.0221145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002760 | RBH | 0.029878 | 0.000000 | 0.850285 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0043100 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0002930 | RBH | 0.430198 | 0.000000 | 0.233529 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002850 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
