Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_07g0017900 | OGI:07058810 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr07:20697371-20699624 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tttattgtacattttattctgcattgtgtagaaaggaattttattcaacaagagcgaacggaatacacttaaaattcttaaccagaatctaaatacaatatcatccttattttctcagcacagtaatacggggctattcttcaatcccactttcattattgagcttctggtaagctaccttcggtcttcagtaaaatatgttcattgaagaagtcttgcttggtgggagtacgcagtttccaattcctatgaatgattgaacaaacgctaataagataacaattaacaacacgaaataaaagtatgcataagcgtgtgaactcactcggtgcctggttgacgatggaagcagcaccaccaaagtcacacgagccacttgccctgccggcagtctggtaatagtcattgaatgcataggtcgcatgcgccaccttggtgttaggatcaaagcaccgtccaccaggctggatggcactgcagtctgcgcagctactgcatgcatagtctagtgctgcctgtaaccgcatgtccccgacctctgcgttcgccacgcaccaactcgggttcgggtcacagatgcctaaatcccaacaaacaattcatatatagaacatgtaaaacataataagatggatatcacaatatgaattgaatgcacaattgcaaaagcttattgatcttaaaagatggccattgaatggaaactaacttggtgatggcttgtagacgatgtaagcagcaccggcaaagttgcacgcgctacttgccttgccattacgctggtagtagtcattgaatgcataagatgcatgtgcaaccatggtgtttggctcatagcacacttttccctgttggatagcactgcagtccgcgccgttactacacgcccagtccagtgctccctgtagccgtgcattcccaatagctgcatttgccacacaccagctctcctttgtgggacatgtaccaccaccatgaaagtcaacatcgtacaccttcgtcccatccggatagaacaggccgaagttgctctctatagatggcccacccttcttgttctcgttgaacaaagcgaatatgtacgcagaaacatcctccatattggaggccccgaacaagactcgcttggcaaggccattgttgtatgcttgagcgttagctttagttgccaccgagtccccatcagcattggcttctgtgacccctgagcggattctaccaccagaggggtggcctgattctgaaactctgatgggcacccgtcctcctgcttgggctaacgaggccctctcgttactaccagaaaccttgtttattgcatagtaaactgcatctagctcggcatcaaagagactgtaatatgtgacgccgctcaccggatcgaacacaccagcattgggacggaacgtggcgtactcgagggagattccggtagaaggatccgcatatgcaaagaatgggtagagatttaccataaagtacgagtcagtctgctgcaagaagtcgatcatggggctcatcaccgactgcgcgatgtcatcccggaaagcgcctgcggacggcgggaatgacacctcgactgagctgaacgtgatcggggtggacacccttatggcatcggcgaggcccagcctcgccagcgccgcgtgcacgttcctcatggccggcaccagctgctgggtcaggtgaggcgcctgatcgaacacctcgttccccacggccacgccgttgatcagcgtggccgggtagtagggcaccacgctgctctccacccacctctgtgcgtagctcggatcccagccggcggagcccagatcggtgttgggtagcgccaccatcaccttgatgccggtgttcgccagcgccctcagcaccgccgggtcggcgtcgaagatcctcaccatcgtgatgccgttcgccctgagaaggctcaccacggattgcgggtccatcagattgtccgcgtccctcccgtagcacacgcccaactcgcccgcatctgctgtgtgcaaattaagaacaaacaaacgacgtcgttgtgattgttaattacgaaagtgagattaattacctttcagccttaatttgtagtttgtacatctctgatcgagttaattacctgcatgggagagaaagagcaacggtaatgcggtggctaagagaacgcggaggaggtgatgagtgagcgccatctctagtcctgtttggcgccgtggcagactgaggatagtcgaattccactgtgtgactgtgt
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| CDS seq | atggcgctcactcatcacctcctccgcgttctcttagccaccgcattaccgttgctctttctctcccatgcagatgcgggcgagttgggcgtgtgctacgggagggacgcggacaatctgatggacccgcaatccgtggtgagccttctcagggcgaacggcatcacgatggtgaggatcttcgacgccgacccggcggtgctgagggcgctggcgaacaccggcatcaaggtgatggtggcgctacccaacaccgatctgggctccgccggctgggatccgagctacgcacagaggtgggtggagagcagcgtggtgccctactacccggccacgctgatcaacggcgtggccgtggggaacgaggtgttcgatcaggcgcctcacctgacccagcagctggtgccggccatgaggaacgtgcacgcggcgctggcgaggctgggcctcgccgatgccataagggtgtccaccccgatcacgttcagctcagtcgaggtgtcattcccgccgtccgcaggcgctttccgggatgacatcgcgcagtcggtgatgagccccatgatcgacttcttgcagcagactgactcgtactttatggtaaatctctacccattctttgcatatgcggatccttctaccggaatctccctcgagtacgccacgttccgtcccaatgctggtgtgttcgatccggtgagcggcgtcacatattacagtctctttgatgccgagctagatgcagtttactatgcaataaacaaggtttctggtagtaacgagagggcctcgttagcccaagcaggaggacgggtgcccatcagagtttcagaatcaggccacccctctggtggtagaatccgctcaggggtcacagaagccaatgctgatggggactcggtggcaactaaagctaacgctcaagcatacaacaatggccttgccaagcgagtcttgttcggggcctccaatatggaggatgtttctgcgtacatattcgctttgttcaacgagaacaagaagggtgggccatctatagagagcaacttcggcctgttctatccggatgggacgaaggtgtacgatgttgactttcatggtggtggtacatgtcccacaaaggagagctggtgtgtggcaaatgcagctattgggaatgcacggctacagggagcactggactgggcgtgtagtaacggcgcggactgcagtgctatccaacagggaaaagtgtgctatgagccaaacaccatggttgcacatgcatcttatgcattcaatgactactaccagcgtaatggcaaggcaagtagcgcgtgcaactttgccggtgctgcttacatcgtctacaagccatcaccaagcatctgtgacccgaacccgagttggtgcgtggcgaacgcagaggtcggggacatgcggttacaggcagcactagactatgcatgcagtagctgcgcagactgcagtgccatccagcctggtggacggtgctttgatcctaacaccaaggtggcgcatgcgacctatgcattcaatgactattaccagactgccggcagggcaagtggctcgtgtgactttggtggtgctgcttccatcgtcaaccaggcaccgagaattggaaactgcgtactcccaccaagcaagacttcttcaatgaacatattttactga
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| Protein seq | MALTHHLLRVLLATALPLLFLSHADAGELGVCYGRDADNLMDPQSVVSLLRANGITMVRIFDADPAVLRALANTGIKVMVALPNTDLGSAGWDPSYAQRWVESSVVPYYPATLINGVAVGNEVFDQAPHLTQQLVPAMRNVHAALARLGLADAIRVSTPITFSSVEVSFPPSAGAFRDDIAQSVMSPMIDFLQQTDSYFMVNLYPFFAYADPSTGISLEYATFRPNAGVFDPVSGVTYYSLFDAELDAVYYAINKVSGSNERASLAQAGGRVPIRVSESGHPSGGRIRSGVTEANADGDSVATKANAQAYNNGLAKRVLFGASNMEDVSAYIFALFNENKKGGPSIESNFGLFYPDGTKVYDVDFHGGGTCPTKESWCVANAAIGNARLQGALDWACSNGADCSAIQQGKVCYEPNTMVAHASYAFNDYYQRNGKASSACNFAGAAYIVYKPSPSICDPNPSWCVANAEVGDMRLQAALDYACSSCADCSAIQPGGRCFDPNTKVAHATYAFNDYYQTAGRASGSCDFGGAASIVNQAPRIGNCVLPPSKTSSMNIFY |
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| Function | Glucan endo-1,3-beta-glucosidase 13 [UniProtKB/Swiss-Prot:Q9FJU9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0017900 | OsCMeo_07g0017900.02 | Chr07 | 20697371 | 20699624 | - | NAM | ||
| CDS seq | atggcgctcactcatcacctcctccgcgttctcttagccaccgcattaccgttgctctttctctcccatgcagatgcgggcgagttgggcgtgtgctacgggagggacgcggacaatctgatggacccgcaatccgtggtgagccttctcagggcgaacggcatcacgatggtgaggatcttcgacgccgacccggcggtgctgagggcgctggcgaacaccggcatcaaggtgatggtggcgctacccaacaccgatctgggctccgccggctgggatccgagctacgcacagaggtgggtggagagcagcgtggtgccctactacccggccacgctgatcaacggcgtggccgtggggaacgaggtgttcgatcaggcgcctcacctgacccagcagctggtgccggccatgaggaacgtgcacgcggcgctggcgaggctgggcctcgccgatgccataagggtgtccaccccgatcacgttcagctcagtcgaggtgtcattcccgccgtccgcaggcgctttccgggatgacatcgcgcagtcggtgatgagccccatgatcgacttcttgcagcagactgactcgtactttatggtaaatctctacccattctttgcatatgcggatccttctaccggaatctccctcgagtacgccacgttccgtcccaatgctggtgtgttcgatccggtgagcggcgtcacatattacagtctctttgatgccgagctagatgcagtttactatgcaataaacaaggtttctggtagtaacgagagggcctcgttagcccaagcaggaggacgggtgcccatcagagtttcagaatcaggccacccctctggtggtagaatccgctcaggggtcacagaagccaatgctgatggggactcggtggcaactaaagctaacgctcaagcatacaacaatggccttgccaagcgagtcttgttcggggcctccaatatggaggatgtttctgcgtacatattcgctttgttcaacgagaacaagaagggtgggccatctatagagagcaacttcggcctgttctatccggatgggacgaaggtgtacgatgttgactttcatggtggtggtacatgtcccacaaaggagagctggtgtgtggcaaatgcagctattgggaatgcacggctacagggagcactggactgggcgtgtagtaacggcgcggactgcagtgctatccaacagggaaaagtgtgctatgagccaaacaccatggttgcacatgcatcttatgcattcaatgactactaccagcgtaatggcaaggcaagtagcgcgtgcaactttgccggtgctgcttacatcgtctacaagccatcaccaagcatctgtgacccgaacccgagttggtgcgtggcgaacgcagaggtcggggacatgcggttacaggcagcactagactatgcatgcagtagctgcgcagactgcagtgccatccagcctggtggacggtgctttgatcctaacaccaaggtggcgcatgcgacctatgcattcaatgactattaccagactgccggcagggcaagtggctcgtgtgactttggtggtgctgcttccatcgtcaaccaggcaccgagaattggaaactgcgtactcccaccaagcaagacttcttcaatgaacatattttactga
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| Protein seq | MALTHHLLRVLLATALPLLFLSHADAGELGVCYGRDADNLMDPQSVVSLLRANGITMVRIFDADPAVLRALANTGIKVMVALPNTDLGSAGWDPSYAQRWVESSVVPYYPATLINGVAVGNEVFDQAPHLTQQLVPAMRNVHAALARLGLADAIRVSTPITFSSVEVSFPPSAGAFRDDIAQSVMSPMIDFLQQTDSYFMVNLYPFFAYADPSTGISLEYATFRPNAGVFDPVSGVTYYSLFDAELDAVYYAINKVSGSNERASLAQAGGRVPIRVSESGHPSGGRIRSGVTEANADGDSVATKANAQAYNNGLAKRVLFGASNMEDVSAYIFALFNENKKGGPSIESNFGLFYPDGTKVYDVDFHGGGTCPTKESWCVANAAIGNARLQGALDWACSNGADCSAIQQGKVCYEPNTMVAHASYAFNDYYQRNGKASSACNFAGAAYIVYKPSPSICDPNPSWCVANAEVGDMRLQAALDYACSSCADCSAIQPGGRCFDPNTKVAHATYAFNDYYQTAGRASGSCDFGGAASIVNQAPRIGNCVLPPSKTSSMNIFY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0017900 | OsCMeo_07g0017900.01 | Chr07 | 20697371 | 20699624 | - | NAM | ||
| CDS seq | atggcgctcactcatcacctcctccgcgttctcttagccaccgcattaccgttgctctttctctcccatgcagatgcgggcgagttgggcgtgtgctacgggagggacgcggacaatctgatggacccgcaatccgtggtgagccttctcagggcgaacggcatcacgatggtgaggatcttcgacgccgacccggcggtgctgagggcgctggcgaacaccggcatcaaggtgatggtggcgctacccaacaccgatctgggctccgccggctgggatccgagctacgcacagaggtgggtggagagcagcgtggtgccctactacccggccacgctgatcaacggcgtggccgtggggaacgaggtgttcgatcaggcgcctcacctgacccagcagctggtgccggccatgaggaacgtgcacgcggcgctggcgaggctgggcctcgccgatgccataagggtgtccaccccgatcacgttcagctcagtcgaggtgtcattcccgccgtccgcaggcgctttccgggatgacatcgcgcagtcggtgatgagccccatgatcgacttcttgcagcagactgactcgtactttatggtaaatctctacccattctttgcatatgcggatccttctaccggaatctccctcgagtacgccacgttccgtcccaatgctggtgtgttcgatccggtgagcggcgtcacatattacagtctctttgatgccgagctagatgcagtttactatgcaataaacaaggtttctggtagtaacgagagggcctcgttagcccaagcaggaggacgggtgcccatcagagtttcagaatcaggccacccctctggtggtagaatccgctcaggggtcacagaagccaatgctgatggggactcggtggcaactaaagctaacgctcaagcatacaacaatggccttgccaagcgagtcttgttcggggcctccaatatggaggatgtttctgcgtacatattcgctttgttcaacgagaacaagaagggtgggccatctatagagagcaacttcggcctgttctatccggatgggacgaaggtgtacgatgttgactttcatggtggtggtacatgtcccacaaaggagagctggtgtgtggcaaatgcagctattgggaatgcacggctacagggagcactggactgggcgtgtagtaacggcgcggactgcagtgctatccaacagggaaaagtgtgctatgagccaaacaccatggttgcacatgcatcttatgcattcaatgactactaccagcgtaatggcaaggcaagtagcgcgtgcaactttgccggtgctgcttacatcgtctacaagccatcaccaagttag
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| Protein seq | MALTHHLLRVLLATALPLLFLSHADAGELGVCYGRDADNLMDPQSVVSLLRANGITMVRIFDADPAVLRALANTGIKVMVALPNTDLGSAGWDPSYAQRWVESSVVPYYPATLINGVAVGNEVFDQAPHLTQQLVPAMRNVHAALARLGLADAIRVSTPITFSSVEVSFPPSAGAFRDDIAQSVMSPMIDFLQQTDSYFMVNLYPFFAYADPSTGISLEYATFRPNAGVFDPVSGVTYYSLFDAELDAVYYAINKVSGSNERASLAQAGGRVPIRVSESGHPSGGRIRSGVTEANADGDSVATKANAQAYNNGLAKRVLFGASNMEDVSAYIFALFNENKKGGPSIESNFGLFYPDGTKVYDVDFHGGGTCPTKESWCVANAAIGNARLQGALDWACSNGADCSAIQQGKVCYEPNTMVAHASYAFNDYYQRNGKASSACNFAGAAYIVYKPSPS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr07 | 20697696 | 20699369 | - | OsCMeo_07g0017900.01 | OsCMeo_07g0017900.01,OsCMeo_07g0017900.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0538000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35350 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0538000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018020 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0017930 | RBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018020 | RBH | 1.783775 | 25.033304 | 1.999873 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017820 | RBH | 0.0 | 0.086112 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0017910 | RBH | 0.0 | 1.678708 | 1.099422 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0344200 | RBH | 0.061162 | 10.9096475 | 0.8016015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018410 | RBH | 0.0 | 0.233929 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0359400 | SBH | 4.826267 | 4.8051665 | 0.0461295 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017650 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0017930 | RBH | 0.287123 | 6.647925 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017740 | RBH | 0.0 | 3.018816 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018030 | RBH | 0.0 | 0.0 | 0.111915 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017810 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017790 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017650 | SBH | 0.0 | 0.0 | 0.000000 |
