Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_07g0016490 | OGI:07055150 | 3/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr07:19228505-19229596 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctgacccaaacacgcttgatacgcgtgttactgctgctgtgatgaaacactgggcaccgccccccgcagggaagattaaactcaatgttgatgctgcataccaagcaaatcgcaagacgggtggttgggggtttgtgctgcgggatgaagaagggcatgcattactggcaggagctggacggctggaattcgttcatgatgttgtttcggcggaagcaagggcatgcttatctgccctcctggccatctcggtgcaaggtgtgactgaggtggagatcgagtctgactcagctattctggtctcagcagtaacgtcatcctcccatagccaagctgttggggctacaattttcgctgaaatcaagatgctgctgcaacttcattttgctaattcgaaggtttcctttgcccctcgatcctgtaataatgttgctcataatctagccaagattggtgtgagttgggacccggatcagtctgtggtctgggttgaccccctcccgtattttgtacgtactctggtgattcgtgatcgtactgaatctccccagtaataagaatgtgcggatgaacctcaaaaaaaaaaatcgtaagttgtaaaatataccattacttcatctgtttcacaatgtaagattttctagcatagtccacattcatatatatgtctagattcattaacatctatatgaatgtgggcaatgctagaaagtcttacattatgaaacggatggtactattcagctatttttaaacatgtcattacaattttacatgtatttgagatatgccactatttaacctattgatgcagttgtaaaatttttagtaccaaattgcccctttattttaccttggtccatattcatcttctttccccttccccttccgtatctggatttgacggatttcaatgggaaaagaggcagggagatgagagaaaaagcagtggtcttgttgactgtcttttctcctttagatggcagcattatgggctagatgggccaaaatgtgcgctgcgggtgcatacgcgcgagaaaggaggcctgagctcagttcgcaacttttatagcaacatgggcacctag
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| CDS seq | atggctgacccaaacacgcttgatacgcgtgttactgctgctgtgatgaaacactgggcaccgccccccgcagggaagattaaactcaatgttgatgctgcataccaagcaaatcgcaagacgggtggttgggggtttgtgctgcgggatgaagaagggcatgcattactggcaggagctggacggctggaattcgttcatgatgttgtttcggcggaagcaagggcatgcttatctgccctcctggccatctcggtgcaaggtgtgactgaggtggagatcgagtctgactcagctattctggtctcagcagtaacgtcatcctcccatagccaagctgttggggctacaattttcgctgaaatcaagatgctgctgcaacttcattttgctaattcgaaggtttcctttgcccctcgatcctgtaataatgttgctcataatctagccaagattggtgtgagttgggacccggatcagtctgtggtctgggttgaccccctcccgtattttcattatgggctagatgggccaaaatgtgcgctgcgggtgcatacgcgcgagaaaggaggcctgagctcagttcgcaacttttatagcaacatgggcacctag
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| Protein seq | MADPNTLDTRVTAAVMKHWAPPPAGKIKLNVDAAYQANRKTGGWGFVLRDEEGHALLAGAGRLEFVHDVVSAEARACLSALLAISVQGVTEVEIESDSAILVSAVTSSSHSQAVGATIFAEIKMLLQLHFANSKVSFAPRSCNNVAHNLAKIGVSWDPDQSVVWVDPLPYFHYGLDGPKCALRVHTREKGGLSSVRNFYSNMGT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0016490 | OsCMeo_07g0016490.01 | Chr07 | 19228505 | 19229596 | + | NAM | ||
| CDS seq | atggctgacccaaacacgcttgatacgcgtgttactgctgctgtgatgaaacactgggcaccgccccccgcagggaagattaaactcaatgttgatgctgcataccaagcaaatcgcaagacgggtggttgggggtttgtgctgcgggatgaagaagggcatgcattactggcaggagctggacggctggaattcgttcatgatgttgtttcggcggaagcaagggcatgcttatctgccctcctggccatctcggtgcaaggtgtgactgaggtggagatcgagtctgactcagctattctggtctcagcagtaacgtcatcctcccatagccaagctgttggggctacaattttcgctgaaatcaagatgctgctgcaacttcattttgctaattcgaaggtttcctttgcccctcgatcctgtaataatgttgctcataatctagccaagattggtgtgagttgggacccggatcagtctgtggtctgggttgaccccctcccgtattttcattatgggctagatgggccaaaatgtgcgctgcgggtgcatacgcgcgagaaaggaggcctgagctcagttcgcaacttttatagcaacatgggcacctag
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| Protein seq | MADPNTLDTRVTAAVMKHWAPPPAGKIKLNVDAAYQANRKTGGWGFVLRDEEGHALLAGAGRLEFVHDVVSAEARACLSALLAISVQGVTEVEIESDSAILVSAVTSSSHSQAVGATIFAEIKMLLQLHFANSKVSFAPRSCNNVAHNLAKIGVSWDPDQSVVWVDPLPYFHYGLDGPKCALRVHTREKGGLSSVRNFYSNMGT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g38450 | SBH | 0.129105 | 0.175965 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0020310 | SBH | 0.304319 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0008990 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0020100 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0020170 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0323700 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0020610 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0336600 | RBH | 0 | 0.030504 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0019960 | SBH | 0.067353 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0020070 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0020010 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0020190 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0019930 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G019830 | SBH | 0.368770 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0019930 | SBH | 0.802106 | 4.703659 | 0.412018 |
