Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g38450 | OGI:07064470 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:23101150-23105362 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAATAAGCAACCCAATTAGCAATCTCCTCCAAACCCATCCCCACATCATTGACGTTGTTAAGATCGATGCCCTCCCTTGCCTCTATGTTCCCGTTCAAGTTCTTCCTCACCGTTGCCATCTCCTTGTTGGACCTGGCCATATAGTGCTCGGGGGGAACCGGTCGTGAGCAAAGGTGGCTAAGCAAAGGGTTGTCGCAGGGAAGTAGCCGGGAGGCAGCAACCTCAGATGAAACTTGACCTTCAAGGTGGAGTGACATACTGACATGTGCAAATGTGTGGTGTTGGGCGTCGGGTTTGCTTCGTCATGCCACAAAGTAGAGTTGACGCACGACTGCATAAGGATGATGAAGCTAACGACAGCTACAATGGAGATGTCAAGACGCTGTAACTGGCGAATGAGATCTCTACAACCTGGTGTGGAAGCGGGAGGAAGAAAGCCATATTGGTATGCTTTGCAAATCTTGATGTTTCAACAAATGGACTACAATTTTTCACGGGCAATAGTGAAATGTTATATCTTGAAATTGACTGTGTTTCATGTTTTTAGATTTGTTATTTTTGATGCTTCGATAGTTGGCACTTAATGTTCCAGAAAATGTTTCACCTTGAATTTAACAGGGTTTCGCCTTTTTCTACTTATTATTGATGTTGCACTCTACTTATCAACATATTTTTTACATGTTTTTCTAATGTTGGTTCATTGCACACTAGTTTTTGTCTGTGTATTTTTCAAATGTTTCAATGACATAATGTATCTTTTTCAAGATATTTGTCTGTGTATTCATAATGTATTACAGTTAGAGAAGATACAATAGCAGGCTATAAGCTAGCTGCAAACATATTTTAAGAAGATAAATGATGAGAGAGAGAAACAGCGGGCTACAGATTTATAGCCAGTTGTAACACGAACTCCAAGACGAAGTGTGTGTATGATAGGTGGGACCAGGTATTAATAGTGTAGTGTGTAACTATTGTATGAATGAGCTATTAGAGCAAGTTTAATAATATAGCCCACTACTAGCTCCAATTCATCTATAGCCGATCTAATAGCCAATTCATACAATAGTTGCTTACTATACTATTAATATATGGTCCTACCTATCATACACACATTGCGTCTTGAAGTCCGTGCTGCAGCTAGCTACAAATCTGTAGTCCGCTGCTGACGGAGCTCGTGGCTCCTCACCGGGAGACCGCACAGGCCCCCCTTTGCTAGTTCGGCCGGGGGCTTAGGGTGAAATCTCAAGCTCTCTCGGTATGTGGAAAGATCGCGAGCCAGGAAGAAACGCGAGACTCGGGCGATGTATACAGGTTCGGGCCGCTGGGAAGCGTAATACCCTACTCCTGTGTTTTGGTGGATCTGTGTATGAACCAGCTACAAAAGTCTCAACCAGCCCCCCCTCCAACCCTGCAAAATCCTCCCCTTCTTTAAGTGGGCAAGGTCCTCCTTTTATATCTCAAGGGGATACCACATGCCCCTCCCCTTTCCAAACTGGACTGTTCTTCTCTTCATAAATGGACGGAGATCGGTACGGTTGCTGTCCGAGTGCCCTTCTGACGGGACGGCCCATACCTACTCCCACTTCCGCCGGAAACAGGTGCGACGTGGGATTATGGCTGTCTGTGGATGACGCGACCAGTGTCAGACCGGTCACAGATCAGTCATCCTTGTCCACCACGCGTCAGTTTAGCAACGTGCATGTTCGCCCTTCTTCATGTAACATTTTTCCTGTAATGGTTGGGATGAAGCCTGGTATATATCTGACCGGAGGTAACGTGCCATCTCTGAGAGGCAACACGCTAGCTCCGGCTAGAGACGAGTGCCTAGAGGCTCTCGTCTTGACGGGATGGGGCGAGGCGTGCGTCAGACCGCCAGTCGCCACCTAACCCGTGATCTGACCGGTCTGTGACTGGTCACAGACCGGATAAAGGAACGCGCTGCACTGCGCTGCATGCAGCGTGACACGCTTGACCAGACCGCAATAAATGCGGTTAGATGAGCCCTGCCGTGTTCACCTAACCCATATATGTGACGCAAAAACCCTCAAGGGGTCGGGGCGCCTCGGCCCTCGGGGCCGGGACAGGAGTCACCCGACCCCCCTCGGGGAAATCAAGAGGAGGGCGGACACCTCACCCTTGGGCCCGACGTCCCCGAGGGTGCCAGGCCACGTGGGCGATTGTGTCTGCCTCAAGCCTCTGGTCTCGATACCCCCGGTCCCATATCACCGACAGCTGCTCTTCTCTCTCGTCCTTTATCTCATTAAAATATGTTTATAGCTGGCTAATAGTTTGCTATTGTACCCGCTCTTAGATTGACTATAGATAAACTAGAGCTAGTAGTTTTTTTTTTGACAGGAAACGTGCTCTTTATTAATACCTTGGTTCAGTGTAATCACGAACCACAAAACACTGTACAAAATCCGGGAGGGGGTCTGCCCATATGGACATATGACACGGGTCCCAACTAGCCCCTTTCCGGGCCAGTTCATGAGCACAACTATTACATGAATGATTAGCAAAAGACACCTTGATCATACCTAAGTCCATACGGAGCAGAGTTCTAATTTGTTTAAAAGTCACGCCCGCCGTAGACTGGTCGTAGCAAGCGGAGTCCAGTGCGCTCACCAGGATGGAGCTATCTGTTTCAACAGAGAAATACGAAAAACCATGATTTAGAACAGCACGCAAGGCATGCAGACAAGCGACGGCTTCCGCGCTAAGCGCATCATGCACCAGTTCGATTCGTCCTGCTCTAGCCAGTACCCCATTCCCCTCATGGTCCCGGAGGATAAAGCCCCAACCACCACTTAGATTAGCCGCCTGGAAAGCACCATCAATGTTCAGCTTTAGAACACACTGGGGAGGCGGACACCATGTACTTTGACTGCTAGGATTTCCCCGAGCTTTGTCCCGAAAGAGCAAGGAGTTTTCTGACACCATCCTTATGACTCTGCTATATACCTCTTCATGCGTTCTCCTATCCTCCCCAGCATTCACTTTGTTTCTTGCATCCCACCAATTCCAGAGCAGTATGACAGTCGTTAACATAATGTCTTCTCTCAAATTCAGAATGTGCTTACATACATCCAACGTAGAAGTCTGAAGAGAAAGCTCCTGCCTAATGTGCTCAAAGTTCAGCATGCGCCAACAAGGTTTGACAAATTTGCACTTGAAGAAACAGTGGCCACCATTCTCATCTAACCGGAGGCAGACTGGGCACCTTGTATCGATCTCCATACCTCTTTTACTGATATTCTGACGGAGTGGCAAACTGTTGTGCGCTAAGCGCCACAGGAAATGCTTCACCTTAGGAAGGTGATTCAGTCTCCATAGCTTCTCCCACTGAAGGGCTGCACTGCTCGTTTTCCCCGATGAAGATTCACCTGTTTGTCGTATTGCCTGACGATCACGCTGATATTCCAGAGTGTGGTATGCCGACTTCACCGAAAAAATGCCCCTTGGGTCAAAATGCCATGCTGCAACATCGCTATAGCCATTATGAACTGGGATGGCTAGAATGTTTTTCACATCCTCCTCCCAGAATATATCCTGGATCAACTCTCTATCCCATTCTCCGGTAATTGGATTAATTAAGTCAGCAACTTTGTTCAGAACGATCCCTCTCCTTGGGGTAATTGGCCTCTTGGTTGTACCCAAGGGGATCCATGGGTCGTTCCACATATCTATGTCGGTACCATCACCAACACGCCAGATTAGGCCAACCTTCAACACCTGCACCCCCCGAACAATACTTCTCCAAGAATATGAGATGCCCGGACTTTCTCTAACCTCCATAAGCTTCCCATCTGGGAAATATTTGGCCTTTAACACTCTTGCGCACAATGAGTCTAGATTGGAAAGGAGCCGCCACGCTTGATGGGCTAACATCGCTAGATTGAAAAGGTGGAGGTCTCTGTATCCCAGGCCCCCTTTTTCCGTTCGACTGCATAGTTTGTCCCAGGCAATCCAATGCATTTTGTTTTCCCGATCATGCTGTGCCCAAAAGAAACGGGAGATCAAACTGCTTATTTCATCGTAAAGGGTTTTTGTCAGGTCAAAACATGACATTGCAAAAGCTGGAATAGCTTGTGCCACAGCTTTGATCAAAATATCCTTCCCGGCACGCGACAACAACTTCTCCTTCCAGCCTTGTATCTTCTTCCAGACCCTCTCCTTCAAATAATTGAAGGTCTTTTTCTTTGATCTCCCCAT
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| CDS seq | ATGGGGAGATCAAAGAAAAAGACCTTCAATTATTTGAAGGAGAGGGTCTGGAAGAAGATACAAGGCTGGAAGGAGAAGTTGTTGTCGCGTGCCGGGAAGGATATTTTGATCAAAGCTGTGGCACAAGCTATTCCAGCTTTTGCAATGTCATGTTTTGACCTGACAAAAACCCTTTACGATGAAATAAGCAGTTTGATCTCCCGTTTCTTTTGGGCACAGCATGATCGGGAAAACAAAATGCATTGGATTGCCTGGGACAAACTATGCAGTCGAACGGAAAAAGGGGGCCTGGGATACAGAGACCTCCACCTTTTCAATCTAGCGATGTTAGCCCATCAAGCGTGGCGGCTCCTTTCCAATCTAGACTCATTGTGCGCAAGAGTGTTAAAGGCCAAATATTTCCCAGATGGGAAGCTTATGGAGGTTAGAGAAAGTCCGGGCATCTCATATTCTTGGAGAAGTATTGTTCGGGGGGTGCAGGTGTTGAAGGTTGGCCTAATCTGGCGTGTTGGTGATGGTACCGACATAGATATGTGGAACGACCCATGGATCCCCTTGGGTACAACCAAGAGGCCAATTACCCCAAGGAGAGGGATCGTTCTGAACAAAGTTGCTGACTTAATTAATCCAATTACCGGAGAATGGGATAGAGAGTTGATCCAGGATATATTCTGGGAGGAGGATGTGAAAAACATTCTAGCCATCCCAGTTCATAATGGCTATAGCGATGTTGCAGCATGGCATTTTGACCCAAGGGGCATTTTTTCGGTGAAGTCGGCATACCACACTCTGGAATATCAGCGTGATCGTCAGGCAATACGACAAACAGGTGAATCTTCATCGGGGAAAACGAGCAGTGCAGCCCTTCAGTGGGAGAAGCTATGGAGACTGAATCACCTTCCTAAGGTGAAGCATTTCCTGTGGCGCTTAGCGCACAACAGTTTGCCACTCCGTCAGAATATCAGTAAAAGAGGTATGGAGATCGATACAAGGTGCCCAGTCTGCCTCCGGTTAGATGAGAATGGTGGCCACTGTTTCTTCAAGTGCAAATTTGTCAAACCTTGTTGGCGCATGCTGAACTTTGAGCACATTAGGCAGGAGCTTTCTCTTCAGACTTCTACGTTGGATGTATGTAAGCACATTCTGAATTTGAGAGAAGACATTATGTTAACGACTGTCATACTGCTCTGGAATTGGTGGGATGCAAGAAACAAAGTGAATGCTGGGGAGGATAGGAGAACGCATGAAGAGGTATATAGCAGAGTCATAAGGATGGTGTCAGAAAACTCCTTGCTCTTTCGGGACAAAGCTCGGGGAAATCCTAGCAGTCAAAGTACATGGTGTCCGCCTCCCCAGTGTGTTCTAAAGCTGAACATTGATGGTGCTTTCCAGGCGGCTAATCTAAGTGGTGGTTGGGGCTTTATCCTCCGGGACCATGAGGGGAATGGGGTACTGGCTAGAGCAGGACGAATCGAACTGGTGCATGATGCGCTTAGCGCGGAAGCCGTCGCTTGTCTGCATGCCTTGCGTGCTGTTCTAAATCATGGTTTTTCGTATTTCTCTGTTGAAACAGATAGCTCCATCCTGGTGAGCGCACTGGACTCCGCTTGCTACGACCAGTCTACGGCGGGCGTGACTTTTAAACAAATTAGAACTCTGCTCCGTATGGACTTAGGTCAAGTTTCATCTGAGGTTGCTGCCTCCCGGCTACTTCCCTGCGACAACCCTTTGCTTAGCCACCTTTGCTCACGACCGGTTCCCCCCGAGCACTATATGGCCAGGTCCAACAAGGAGATGGCAACGGTGAGGAAGAACTTGAACGGGAACATAGAGGCAAGGGAGGGCATCGATCTTAACAACGTCAATGATGTGGGGATGGGTTTGGAGGAGATTGCTAATTGGGTTGCTTATTGA
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| Protein seq | MGRSKKKTFNYLKERVWKKIQGWKEKLLSRAGKDILIKAVAQAIPAFAMSCFDLTKTLYDEISSLISRFFWAQHDRENKMHWIAWDKLCSRTEKGGLGYRDLHLFNLAMLAHQAWRLLSNLDSLCARVLKAKYFPDGKLMEVRESPGISYSWRSIVRGVQVLKVGLIWRVGDGTDIDMWNDPWIPLGTTKRPITPRRGIVLNKVADLINPITGEWDRELIQDIFWEEDVKNILAIPVHNGYSDVAAWHFDPRGIFSVKSAYHTLEYQRDRQAIRQTGESSSGKTSSAALQWEKLWRLNHLPKVKHFLWRLAHNSLPLRQNISKRGMEIDTRCPVCLRLDENGGHCFFKCKFVKPCWRMLNFEHIRQELSLQTSTLDVCKHILNLREDIMLTTVILLWNWWDARNKVNAGEDRRTHEEVYSRVIRMVSENSLLFRDKARGNPSSQSTWCPPPQCVLKLNIDGAFQAANLSGGWGFILRDHEGNGVLARAGRIELVHDALSAEAVACLHALRAVLNHGFSYFSVETDSSILVSALDSACYDQSTAGVTFKQIRTLLRMDLGQVSSEVAASRLLPCDNPLLSHLCSRPVPPEHYMARSNKEMATVRKNLNGNIEAREGIDLNNVNDVGMGLEEIANWVAY |
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| Function | Putative ribonuclease H protein At1g65750 [UniProtKB/Swiss-Prot:P0C2F6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g38450 | LOC_Os07g38450.1 | Chr07 | 23101150 | 23105362 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGGAGATCAAAGAAAAAGACCTTCAATTATTTGAAGGAGAGGGTCTGGAAGAAGATACAAGGCTGGAAGGAGAAGTTGTTGTCGCGTGCCGGGAAGGATATTTTGATCAAAGCTGTGGCACAAGCTATTCCAGCTTTTGCAATGTCATGTTTTGACCTGACAAAAACCCTTTACGATGAAATAAGCAGTTTGATCTCCCGTTTCTTTTGGGCACAGCATGATCGGGAAAACAAAATGCATTGGATTGCCTGGGACAAACTATGCAGTCGAACGGAAAAAGGGGGCCTGGGATACAGAGACCTCCACCTTTTCAATCTAGCGATGTTAGCCCATCAAGCGTGGCGGCTCCTTTCCAATCTAGACTCATTGTGCGCAAGAGTGTTAAAGGCCAAATATTTCCCAGATGGGAAGCTTATGGAGGTTAGAGAAAGTCCGGGCATCTCATATTCTTGGAGAAGTATTGTTCGGGGGGTGCAGGTGTTGAAGGTTGGCCTAATCTGGCGTGTTGGTGATGGTACCGACATAGATATGTGGAACGACCCATGGATCCCCTTGGGTACAACCAAGAGGCCAATTACCCCAAGGAGAGGGATCGTTCTGAACAAAGTTGCTGACTTAATTAATCCAATTACCGGAGAATGGGATAGAGAGTTGATCCAGGATATATTCTGGGAGGAGGATGTGAAAAACATTCTAGCCATCCCAGTTCATAATGGCTATAGCGATGTTGCAGCATGGCATTTTGACCCAAGGGGCATTTTTTCGGTGAAGTCGGCATACCACACTCTGGAATATCAGCGTGATCGTCAGGCAATACGACAAACAGGTGAATCTTCATCGGGGAAAACGAGCAGTGCAGCCCTTCAGTGGGAGAAGCTATGGAGACTGAATCACCTTCCTAAGGTGAAGCATTTCCTGTGGCGCTTAGCGCACAACAGTTTGCCACTCCGTCAGAATATCAGTAAAAGAGGTATGGAGATCGATACAAGGTGCCCAGTCTGCCTCCGGTTAGATGAGAATGGTGGCCACTGTTTCTTCAAGTGCAAATTTGTCAAACCTTGTTGGCGCATGCTGAACTTTGAGCACATTAGGCAGGAGCTTTCTCTTCAGACTTCTACGTTGGATGTATGTAAGCACATTCTGAATTTGAGAGAAGACATTATGTTAACGACTGTCATACTGCTCTGGAATTGGTGGGATGCAAGAAACAAAGTGAATGCTGGGGAGGATAGGAGAACGCATGAAGAGGTATATAGCAGAGTCATAAGGATGGTGTCAGAAAACTCCTTGCTCTTTCGGGACAAAGCTCGGGGAAATCCTAGCAGTCAAAGTACATGGTGTCCGCCTCCCCAGTGTGTTCTAAAGCTGAACATTGATGGTGCTTTCCAGGCGGCTAATCTAAGTGGTGGTTGGGGCTTTATCCTCCGGGACCATGAGGGGAATGGGGTACTGGCTAGAGCAGGACGAATCGAACTGGTGCATGATGCGCTTAGCGCGGAAGCCGTCGCTTGTCTGCATGCCTTGCGTGCTGTTCTAAATCATGGTTTTTCGTATTTCTCTGTTGAAACAGATAGCTCCATCCTGGTGAGCGCACTGGACTCCGCTTGCTACGACCAGTCTACGGCGGGCGTGACTTTTAAACAAATTAGAACTCTGCTCCGTATGGACTTAGGTCAAGTTTCATCTGAGGTTGCTGCCTCCCGGCTACTTCCCTGCGACAACCCTTTGCTTAGCCACCTTTGCTCACGACCGGTTCCCCCCGAGCACTATATGGCCAGGTCCAACAAGGAGATGGCAACGGTGAGGAAGAACTTGAACGGGAACATAGAGGCAAGGGAGGGCATCGATCTTAACAACGTCAATGATGTGGGGATGGGTTTGGAGGAGATTGCTAATTGGGTTGCTTATTGA
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| Protein seq | MGRSKKKTFNYLKERVWKKIQGWKEKLLSRAGKDILIKAVAQAIPAFAMSCFDLTKTLYDEISSLISRFFWAQHDRENKMHWIAWDKLCSRTEKGGLGYRDLHLFNLAMLAHQAWRLLSNLDSLCARVLKAKYFPDGKLMEVRESPGISYSWRSIVRGVQVLKVGLIWRVGDGTDIDMWNDPWIPLGTTKRPITPRRGIVLNKVADLINPITGEWDRELIQDIFWEEDVKNILAIPVHNGYSDVAAWHFDPRGIFSVKSAYHTLEYQRDRQAIRQTGESSSGKTSSAALQWEKLWRLNHLPKVKHFLWRLAHNSLPLRQNISKRGMEIDTRCPVCLRLDENGGHCFFKCKFVKPCWRMLNFEHIRQELSLQTSTLDVCKHILNLREDIMLTTVILLWNWWDARNKVNAGEDRRTHEEVYSRVIRMVSENSLLFRDKARGNPSSQSTWCPPPQCVLKLNIDGAFQAANLSGGWGFILRDHEGNGVLARAGRIELVHDALSAEAVACLHALRAVLNHGFSYFSVETDSSILVSALDSACYDQSTAGVTFKQIRTLLRMDLGQVSSEVAASRLLPCDNPLLSHLCSRPVPPEHYMARSNKEMATVRKNLNGNIEAREGIDLNNVNDVGMGLEEIANWVAY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.129105 | 0.175965 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0020310 | RBH | 0.304319 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0020250 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0020190 | RBH | 0.000000 | 0.0 | 1.269936 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0020100 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0020170 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0376900 | RBH | 0.0044345 | 0.0085675 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0020610 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0389800 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0019960 | RBH | 0.067353 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0020070 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0020010 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0020190 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0019930 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G019830 | RBH | 0.368770 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0019930 | RBH | 0.802106 | 4.703659 | 0.412018 |
