Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_07g0009260 | OGI:01023240 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr07:9293465-9295743 | ||||||||
| Gene Symbol | OsFbox345, Os_F0495 | ||||||||||
| DNA seq | atccttttcttccctacccagccgtcacgcactcacgcttcctccggcggcggcaaggcgacggcatcggcggccaaggcgcgggcggcggcggcgagcaaggtgcgggcgacggcggcggcggcgagcaaggtgcaggcgacgtcatcggcaaccaaggcgcgggcggcggcggcggcggaagcgggaggcggaggagtgggagaggcggaagagggggaggaggaggaggcggcagagacgagaggaccccgtggatgtgctcggggaggaggtgatggggcgggtgatggagctcctggacgcacgcagcacctggcgctgggtcgccgccgacgaccgcctctgggcacccaaggtcccccccctctctctctctcaTcacagcctgcacggctcctgttcgacgaattgcctgcgaggggcactcgattccccctcacgagcggttaatcgagcagtggctactctcgtgtcttctgttaggatcgagcataccgtattcgggagtggtgttgattaggagcttttatagaattctcatttattgattgtccaatcatggttgccaaaagagaaagagcgcacattcggctagtgtgttctaaactgtctaattttcattggtattttgcaggcttatttgatgagagctggggctgtcattcatagccatgggatggaaacttgcattgcaaccatgcttaatactggtgcaaaagagtttagggtgaacctacttgtctcttttccccatgaatcttagctaatgctccagttctgctttatatttctcatgaagttagctgtaatgtttacagaaatgtggtagtactaagaaaatgcactatttctcatgtagtgtaccacattatggacattttctgtctgatctaatgtatcaaattgaaaaacggataattgttcatatttttagatttccgcttacttttccattacaagaacttcaatggtattaacaattaagtgctaatcttctatatgatgcactattcaataaattggagattatgtttgctccatttccttttcatttcatggcagacattattatatatgtactagaaagagtggtgaacatttttttttaagatttgatctattattgatttcacacagacatgcatcagctatcaggaccagttggaataattgaaatgctaattgagaactttgcatgcaccacatagtacagcaactactcaagccaagttctatttactagtgaagccatttccaacttatatcaatccatttattagaaatatgcatgtacattgtgtgtttactgagtttttacttgtagaatgtaccatcctagtataattattttaaataaaactcccttagttgatctctgcaaattaggtggctagctgtccttgcagtgagttgtcgtagtacaaatttgaaacagtcttcgggcttcagattttccatctacattaattatgaaaatgtcacctacatacatctcaattctaatataagttaacatttgcaagtgggagccaattaaactgtacttcagcacttatcttctttttatttatttactagctatgatttgcgacctgtgggtgagcaatcaacttcttgctgaagtgtcagagaagggtacctgaaggaacagaagatcaacactaacttaaaggctcatacatcatgtaagctaaaatcagtttgttcccatagtttgtgagataaattgcaatccttgctgcttgtaaattgtaattgaatctgttacgattgcaattatactgcttcaacataaatttctcataaaatggaactggtaatttaatattggtggattgtgagaatatcgaagctatgctacagattgaattaaatggaactacatcagttatgttattgacacttatcctgcacatttgacactgatcttcaattctgtattgaaatagtaggtgttgcatagattacttaacattgaatggagtattattataatctatatatctgacccttaatacttttgtctttctgataatctgattcaagtttttagatgctcaacttatcatggcggtcacaagatattttggagtggcatttctctacaagggaaatgccttgcctgttgtagatttgccatcgttttgtctcattttgtagattgtataggagaatctctttttgtacaactaacctatgtacatggcatttgtaattaaatggaattggtatattcagtactaatggaatgtggatgcatgagaactgttggtggt
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| CDS seq | tccttttcttccctacccagccgtcacgcactcacgcttcctccggcggcggcaaggcgacggcatcggcggccaaggcgcgggcggcggcggcgagcaaggtgcgggcgacggcggcggcggcgagcaaggtgcaggcgacgtcatcggcaaccaaggcgcgggcggcggcggcggcggaagcgggaggcggaggagtgggagaggcggaagagggggaggaggaggaggcggcagagacgagaggaccccgtggatgtgctcggggaggaggtgatggggcgggtgatggagctcctggacgcacgcagcacctggcgctgggtcgccgccgacgaccgcctctgggcacccaaggtcccccccctctctctctctcaTcacagcctgcacggctcctgttcgacgaattgcctgcgaggggcactcgattccccctcacgagcggttaatcgagcagtggctactctcgtgtcttctgttaggatcgagcataccgtattcgggagtggtgtt
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| Protein seq | SFSSLPSRHALTLPPAAARRRHRRPRRGRRRRARCGRRRRRRARCRRRHRQPRRGRRRRRKREAEEWERRKRGRRRRRQRREDPVDVLGEEVMGRVMELLDARSTWRWVAADDRLWAPKVPPLSLSHHSLHGSCSTNCLRGALDSPSRAVNRAVATLVSSVRIEHTVFGSGV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0009260 | OsCMeo_07g0009260.01 | Chr07 | 9293710 | 9295743 | + | NAM | ||
| CDS seq | atggggcgggtgatggagctcctggacgcacgcagcacctggcgctgggtcgccgccgacgaccgcctctgggcacccaaggcttatttgatgagagctggggctgtcattcatagccatgggatggaaacttgcattgcaaccatgcttaatactggtgcaaaagagtttagggtgaacctacttgtctcttttccccatgaatcttag
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| Protein seq | MGRVMELLDARSTWRWVAADDRLWAPKAYLMRAGAVIHSHGMETCIATMLNTGAKEFRVNLLVSFPHES |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0009260 | OsCMeo_07g0009260.02 | Chr07 | 9293465 | 9295730 | + | IsoSeq | ||
| CDS seq | tccttttcttccctacccagccgtcacgcactcacgcttcctccggcggcggcaaggcgacggcatcggcggccaaggcgcgggcggcggcggcgagcaaggtgcgggcgacggcggcggcggcgagcaaggtgcaggcgacgtcatcggcaaccaaggcgcgggcggcggcggcggcggaagcgggaggcggaggagtgggagaggcggaagagggggaggaggaggaggcggcagagacgagaggaccccgtggatgtgctcggggaggaggtgatggggcgggtgatggagctcctggacgcacgcagcacctggcgctgggtcgccgccgacgaccgcctctgggcacccaaggtcccccccctctctctctctcaTcacagcctgcacggctcctgttcgacgaattgcctgcgaggggcactcgattccccctcacgagcggttaatcgagcagtggctactctcgtgtcttctgttaggatcgagcataccgtattcgggagtggtgtt
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| Protein seq | SFSSLPSRHALTLPPAAARRRHRRPRRGRRRRARCGRRRRRRARCRRRHRQPRRGRRRRRKREAEEWERRKRGRRRRRQRREDPVDVLGEEVMGRVMELLDARSTWRWVAADDRLWAPKVPPLSLSHHSLHGSCSTNCLRGALDSPSRAVNRAVATLVSSVRIEHTVFGSGV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.962644 | 0.654834 | 3.362742 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0170800 | SBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g07520 | SBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0170800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0009270 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0028660 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0009000 | RBH | 0.166261 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0004390 | SBH | 0.0 | 0.0 | 1.332238 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0004900 | SBH | 0.092114 | 0.0 | 0.121260 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0004380 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0004370 | SBH | 0.180060 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0004410 | SBH | 4.558597 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0004490 | SBH | 0.000000 | 0.229814 | 0.454510 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0004360 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G009190 | RBH | 0.840996 | 1.138615 | 1.111821 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0004330 | SBH | 0.0 | 0.000000 | 0.000000 |
