Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_06g0028530 | OGI:06079700 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr06:29720918-29723322 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCTGGTTTCCAGATCTGCGTGCGGCAGCCTTCGTACCTCAGGAAGGAGTGTCGCACGGGGGATCCGGATCTGCGTCCCGGGAGAGGTCATTGCACGATCTCGTGGACGCCGAGGATGGTGGAGAACGAGACCATGCTGGAGAGGAAGGGCCTCCTCGCCTCGGTACTTGGCACACAACCGCACGTCTCCCCTCAGGAGATGGTCGAGGTGGTGGTGAACTGCGGCGTCCTCCCGTCCAACTTCCGTGTCGAGGTCACCACCCCAGAAGACTACCTCATCATGTTCCGCAACACTAGGGATCGTGACTGGGTGCTTAGCCGATCCAAGGAGGTCTTCTGCAAGGAGGCGGCCATCTCCTTCAAGCGATGGGATAGGCGGTTGCAGGCGGATAGCACCAAGATGCAGTTCTTCACCAAGTTATCGCTGGAGGGGCTGCCGCAGCACGCCTGGGAAGAGGAAGCGGTCGCTCAGATCGTGCGCGAGCTCAGGgggtgagctggtggagatggtcacgccggcggacgctagggtgctcacgttatttgcgtggctctccaaccctagcatggtgccgtcggtgctggaggtggaaatcccagagcgggcggccggcgggccgccgcgctgggagaggttcctaggtcgcacttcgatccccagagcgccgctctacaagaaatccctaacttatgcgctcatcgtgcacatcgaggagatcattgaccccacgccactccactacacctcctacatgggttccgatgatgatgacaacggcgacgtgccgcggcgcgtgaccttctcctgttgggcgggtcgaacagacggcacaggcccctggtcgtctgaacaaggcggcggtcgttctttcggtggtgcatctggggctgcgggcggacttccagggcgcgtctggtccacgacggatcggattgccgccaaaccggcggaggcagtgagggtagacgaagtcgtggtggcGGggctggcgcaggggacggggatcgatgttggggatggtggactggcggcggcggacGCTgcggcgagcgacattgcgacgagagaccctgtgcagatgaggccaggttccctggAActgactggtggtggtggagggatctggttctcgccacagttgttgccgcggacgcaagcggactcgcggctgggagacgagtccgtgccggcgacatgtcaaactgctggagatgcgccggaggctgctcttttgctggctgctcaatcaaacatggcagatgactcttggggccttccgacggtggtgatcccaggaggaagccctatatcgctttccatggaggagcacgaaggcggtggcgtcgctgtgtcgcagacctcgtcggcggcaccggtgactgaggggggggcacggagtcggtgttcaaccacctgctgacgaggcgaatggggagccaacggggatggatccatctgtggtttcagtggacgcggtgtagggcgcgccacacgaggagcctgtcatgagcggcatgggcatgcaacctgcgtctgcacctgccggtctgtgttcacattggtctgcagcactgggcgctgtagccaagaagctacagtttgaagatcttgtcaaggatacgcaggagaatggggctgcattaatggcggtctcggcggtgctggaggatggggaaccggagagcgttggcgggaacgctgaacgggcgatgccgcttgaagaactgaatcctccgtgtaaggagtcgtcggcttctgggccagaacgtgccctgggcccggacgctgaccagggacaaaacggcccgtggtcaggaggcgatagcgggccggctgagctggcctctcggccgctagctgggccgcaagacctggtgcagactgggtcaccattggaagctacttcgactggcccgctactggttgctgggctgccgctggtctacggaagacggcgggatgggccgccacagcctgcgcacgcggatgagcgactacaggacttcctcgactcgatctcagcaacgccaccagcctcggtcctgagcgtgcggccacctgcatctgttccgaccacaagcacgcgcagcaatcgtcgcaacgtcatcccgccggacttcactccttggcggagcccgaggttccaacagcagggctcgggggcgtggcgccacaccatcactaaggcgaaggcggtgaacatgaagaagctggggattattcaagaggaagaggaggcgacggaggactcggtgaagaagtacctgaatttattcgaaaaaccgctctctacacaacacgtggaggccctggcgacattgcttgatgtggacattgctgcccagcctctcgagctcactgattgcagcgagggagttgccgccgtcgcttcgccagcctga
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| CDS seq | ATGGCTGGTTTCCAGATCTGCGTGCGGCAGCCTTCGTACCTCAGGAAGGAGTGTCGCACGGGGGATCCGGATCTGCGTCCCGGGAGAGGTCATTGCACGATCTCGTGGACGCCGAGGATGGTGGAGAACGAGACCATGCTGGAGAGGAAGGGCCTCCTCGCCTCGGTACTTGGCACACAACCGCACGTCTCCCCTCAGGAGATGGTCGAGGTGGTGGTGAACTGCGGCGTCCTCCCGTCCAACTTCCGTGTCGAGGTCACCACCCCAGAAGACTACCTCATCATGTTCCGCAACACTAGGGATCGTGACTGGGTGCTTAGCCGATCCAAGGAGGTCTTCTGCAAGGAGGCGGCCATCTCCTTCAAGCGATGGGATAGGCGGTTGCAGGCGGATAGCACCAAGATGCAGTTCTTCACCAAGTTATCGCTGGAGGGGCTGCCGCAGCACGCCTGGGAAGAGGAAGCGGTCGCTCAGATCGTGCGCGAGCTCAGGggcatggtgccgtcggtgctggaggtggaaatcccagagcgggcggccggcgggccgccgcgctgggagaggttcctaggtcgcacttcgatccccagagcgccgctctacaagaaatccctaacttatgcgctcatcgtgcacatcgaggagatcattgaccccacgccactccactacacctcctacatgggttccgatgatgatgacaacggcgacgtgccgcggcgcgtgaccttctcctgttgggcgggtcgaacagacggcacaggcccctggtcgtctgaacaaggcggcggtcgttctttcggtggtgcatctggggctgcgggcggacttccagggcgcgtctggtccacgacggatcggattgccgccaaaccggcggaggcagtgagggtagacgaagtcgtggtggcGGggctggcgcaggggacggggatcgatgttggggatggtggactggcggcggcggacGCTgcggcgagcgacattgcgacgagagaccctgtgcagatgaggccagcactgggcgctgtagccaagaagctacagtttgaagatcttgtcaaggatacgcaggagaatggggctgcattaatggcggtctcggcggtgctggaggatggggaaccggagagcgttggcgggaacgctgaacgggcgatgccgcttgaagaactgaatcctccgtgtaaggagtcgtcggcttctgggccagaacgtgccctgggcccggacgctgaccagggacaaaacggcccgtggtcaggaggcgatagcgggccggctgagctggcctctcggccgctagctgggccgcaagacctggtgcagactgggtcaccattggaagctacttcgactggcccgctactggttgctgggctgccgctggtctacggaagacggcgggatgggccgccacagcctgcgcacgcggatgagcgactacaggacttcctcgactcgatctcagcaacgccaccagcctcggtcctgagcgtgcggccacctgcatctgttccgaccacaagcacgcgcagcaatcgtcgcaacgtcatcccgccggacttcactccttggcggagcccgaggttccaacagcagggctcgggggcgtggcgccacaccatcactaaggcgaaggcggtgaacatgaagaagctggggattattcaagaggaagaggaggcgacggaggactcggtgaagaagtacctgaatttattcgaaaaaccgctctctacacaacacgtggaggccctggcgacattgcttgatgtggacattgctgcccagcctctcgagctcactgattgcagcgagggagttgccgccgtcgcttcgccagcctga
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| Protein seq | MAGFQICVRQPSYLRKECRTGDPDLRPGRGHCTISWTPRMVENETMLERKGLLASVLGTQPHVSPQEMVEVVVNCGVLPSNFRVEVTTPEDYLIMFRNTRDRDWVLSRSKEVFCKEAAISFKRWDRRLQADSTKMQFFTKLSLEGLPQHAWEEEAVAQIVRELRGMVPSVLEVEIPERAAGGPPRWERFLGRTSIPRAPLYKKSLTYALIVHIEEIIDPTPLHYTSYMGSDDDDNGDVPRRVTFSCWAGRTDGTGPWSSEQGGGRSFGGASGAAGGLPGRVWSTTDRIAAKPAEAVRVDEVVVAGLAQGTGIDVGDGGLAAADAAASDIATRDPVQMRPALGAVAKKLQFEDLVKDTQENGAALMAVSAVLEDGEPESVGGNAERAMPLEELNPPCKESSASGPERALGPDADQGQNGPWSGGDSGPAELASRPLAGPQDLVQTGSPLEATSTGPLLVAGLPLVYGRRRDGPPQPAHADERLQDFLDSISATPPASVLSVRPPASVPTTSTRSNRRNVIPPDFTPWRSPRFQQQGSGAWRHTITKAKAVNMKKLGIIQEEEEATEDSVKKYLNLFEKPLSTQHVEALATLLDVDIAAQPLELTDCSEGVAAVASPA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_06g0028530 | OsCMeo_06g0028530.01 | Chr06 | 29720918 | 29723322 | + | NAM | ||
| CDS seq | ATGGCTGGTTTCCAGATCTGCGTGCGGCAGCCTTCGTACCTCAGGAAGGAGTGTCGCACGGGGGATCCGGATCTGCGTCCCGGGAGAGGTCATTGCACGATCTCGTGGACGCCGAGGATGGTGGAGAACGAGACCATGCTGGAGAGGAAGGGCCTCCTCGCCTCGGTACTTGGCACACAACCGCACGTCTCCCCTCAGGAGATGGTCGAGGTGGTGGTGAACTGCGGCGTCCTCCCGTCCAACTTCCGTGTCGAGGTCACCACCCCAGAAGACTACCTCATCATGTTCCGCAACACTAGGGATCGTGACTGGGTGCTTAGCCGATCCAAGGAGGTCTTCTGCAAGGAGGCGGCCATCTCCTTCAAGCGATGGGATAGGCGGTTGCAGGCGGATAGCACCAAGATGCAGTTCTTCACCAAGTTATCGCTGGAGGGGCTGCCGCAGCACGCCTGGGAAGAGGAAGCGGTCGCTCAGATCGTGCGCGAGCTCAGGggcatggtgccgtcggtgctggaggtggaaatcccagagcgggcggccggcgggccgccgcgctgggagaggttcctaggtcgcacttcgatccccagagcgccgctctacaagaaatccctaacttatgcgctcatcgtgcacatcgaggagatcattgaccccacgccactccactacacctcctacatgggttccgatgatgatgacaacggcgacgtgccgcggcgcgtgaccttctcctgttgggcgggtcgaacagacggcacaggcccctggtcgtctgaacaaggcggcggtcgttctttcggtggtgcatctggggctgcgggcggacttccagggcgcgtctggtccacgacggatcggattgccgccaaaccggcggaggcagtgagggtagacgaagtcgtggtggcGGggctggcgcaggggacggggatcgatgttggggatggtggactggcggcggcggacGCTgcggcgagcgacattgcgacgagagaccctgtgcagatgaggccagcactgggcgctgtagccaagaagctacagtttgaagatcttgtcaaggatacgcaggagaatggggctgcattaatggcggtctcggcggtgctggaggatggggaaccggagagcgttggcgggaacgctgaacgggcgatgccgcttgaagaactgaatcctccgtgtaaggagtcgtcggcttctgggccagaacgtgccctgggcccggacgctgaccagggacaaaacggcccgtggtcaggaggcgatagcgggccggctgagctggcctctcggccgctagctgggccgcaagacctggtgcagactgggtcaccattggaagctacttcgactggcccgctactggttgctgggctgccgctggtctacggaagacggcgggatgggccgccacagcctgcgcacgcggatgagcgactacaggacttcctcgactcgatctcagcaacgccaccagcctcggtcctgagcgtgcggccacctgcatctgttccgaccacaagcacgcgcagcaatcgtcgcaacgtcatcccgccggacttcactccttggcggagcccgaggttccaacagcagggctcgggggcgtggcgccacaccatcactaaggcgaaggcggtgaacatgaagaagctggggattattcaagaggaagaggaggcgacggaggactcggtgaagaagtacctgaatttattcgaaaaaccgctctctacacaacacgtggaggccctggcgacattgcttgatgtggacattgctgcccagcctctcgagctcactgattgcagcgagggagttgccgccgtcgcttcgccagcctga
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| Protein seq | MAGFQICVRQPSYLRKECRTGDPDLRPGRGHCTISWTPRMVENETMLERKGLLASVLGTQPHVSPQEMVEVVVNCGVLPSNFRVEVTTPEDYLIMFRNTRDRDWVLSRSKEVFCKEAAISFKRWDRRLQADSTKMQFFTKLSLEGLPQHAWEEEAVAQIVRELRGMVPSVLEVEIPERAAGGPPRWERFLGRTSIPRAPLYKKSLTYALIVHIEEIIDPTPLHYTSYMGSDDDDNGDVPRRVTFSCWAGRTDGTGPWSSEQGGGRSFGGASGAAGGLPGRVWSTTDRIAAKPAEAVRVDEVVVAGLAQGTGIDVGDGGLAAADAAASDIATRDPVQMRPALGAVAKKLQFEDLVKDTQENGAALMAVSAVLEDGEPESVGGNAERAMPLEELNPPCKESSASGPERALGPDADQGQNGPWSGGDSGPAELASRPLAGPQDLVQTGSPLEATSTGPLLVAGLPLVYGRRRDGPPQPAHADERLQDFLDSISATPPASVLSVRPPASVPTTSTRSNRRNVIPPDFTPWRSPRFQQQGSGAWRHTITKAKAVNMKKLGIIQEEEEATEDSVKKYLNLFEKPLSTQHVEALATLLDVDIAAQPLELTDCSEGVAAVASPA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.264440 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0681000 | SBH | 1.261818 | 0.0 | 0.834570 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g46720 | SBH | 0.132791 | 0.0 | 0.068523 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0681000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0026470 | SBH | 0.0 | 0.0 | 0.768987 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0028390 | RBH | 0.0 | 3.982136 | 0.352534 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0028120 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0026580 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0025980 | SBH | 0.0 | 0.000000 | 0.136032 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0292600 | SBH | 0.016549 | 0.036821 | 0.038794 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0023010 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0026530 | SBH | 0.0 | 3.036363 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0028160 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0026790 | SBH | 0.000000 | 0.000000 | 0.555306 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0026400 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G014120 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0013900 | RBH | 0.0 | 0.0 | 0.0 |
