Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_06g0020500 | OGI:01114160 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr06:22471267-22474785 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cggcggcagtggcggggGTggCggcggcggcggcggcggcggaggttcttgtcgccgacgcaggtggtggtgatcaagagcagcgaagctgagaggaggtttcctgcttgtttggggaacaagaaggtatgtgcagtggggaaatttatgtttttagggttagaggtgatactatacaatctttgataaatcaagtgaaattgattgtagggtttgttagatggatgcagtagataagcttgtggtcagatttcatttcaatggtgaatttctttttgatggcaagaacacatgttatgtcaatggacgtgaagcattgtcttacattgaccgcaagaaggtttcccttaatgagattcgtggtcaagcaaaggagcattatgaggttgcagaaaaggcgttgtttcactggtgttttcctaggaaatcaatagccgatagactcagggttttgcatgatgataagacttgccttctaatggcaaagtataccatacaaggagttgtggcagatgtttatgttgagttggttgatattgaggagatagatgctgaggcaaacaaggatgaagttggtagtgattttgaggatgagatgaaagaaattagtgataacaatgatttagatgacaatactgtagaactgattggaggtaatgaggtcataatgataaattcttcaccaactcatgtaaacaagaatgatatgtgtggtggaaagagaaaggtgttcaagacatctagtgtaggtacaaaaagtaatggagatagtagctcagacagtgagtacctacctggtgattcatcttcttctggtgatgatgaagaggctgacgaaattgagaagacattcaaagagtttaagaggaaattcaaggctggtcatgtttctgagcttgatgagattacatgggctggtggggctgaaccaagtaggggtattgtgccgtatgtggtagaggaaggacatgagaccccatattatgactcaagtgatgatgaggcctcttttgatgaacaaggaagcagtggtgagttggtaaggcatgaatctaagtacccaaggtttagaaacaacaattcttcaacctctccattttctctgggaatgaaattcagtagtaaaaaggaatttaaggatgcagtaattcagtatgccttggctgaaaggagggttataaactttacaaaagatgagtcacatagagttagagccaagtgtgactgggcaacatgtccttggtactgcctactgtcactcacaactaggtcagagagttggcaaataaatagttttactgctgagcatacatgtccacaaaggaagaaaaacaagcttgtcacttcaagaagaattgctgagaagtatgagaacctgatcaaagccaatccacaatggagtttgaatcacattcagactactataagtgaggagatgtttgccaatgttagtatatcgaagatcaaaagggcaaaagctttagtgatgaagaaaatgtttgatgataagaagggagaatacagtttggtgtttaattatcaagaagaattactgagaagtaatcctggaagcacagtggtggtaaaactagacttagatgaagtagaacctgtgtttcagagattttatgtttgttttgatgcttgcaaaaggggcttccttgctggttgtaggaaggtagttggtttagatggctgttttttcaagggagcaaccaatggtgaacttttttgtgctattggtagagatgcaaataaccaaatgtaccctattgcatgggcagttgttgagaaagagaataacgactcttgggactggttttgtagcctcctcttcagagatttgaaagttggttctggtgaaggatgggtgttcatatctgaccagcagaaggtgagctatttaattcattgtaagaatttagctgaccatcaatttaaccatttactgattgattgtctatttttcacattgtagggtattctgaatgcagtccaccattgggcacccttagctgaacatagaaactgcgcaagacatatctatgccaattggaaaaagaaattcaggaacaaagagtggcaaaagaaattttggaggtgtgccaaagctccaaactccattcttttcaatctagcaaaggcccaacttgctcagtgtacagtggatggagctagggcaattatggatacagaccctcatcactggagcagggcatggttcaagataggatctgattgtgattcagttgacaacaacatgtgcgaatcattcaataagtggattgtgcaagccagatatttaccaatcattagcatgcttgaggccattagatgcaaagttatggtcagaatacaagagaatagagacaaggctgctaagtggaatactctaatctgtccaaacatatacaagagattgaagagttatattacagagtcagccttttgccatcctatttacaatggggatgatagctttagctttgaggtaaagacacagactagtaggttcacagtaaatctgtccaccaaaacatgttcttgcagatactggcaattgtcaggccttccttgtgcacatgccatatcatgcatatattacaagtctcctagtctggattctttcattgcaagttgctataatgtggatcacttcaagagcacatatcagcattgcctcaaacctgtggagggcattgatgcttggccaatatctcagagacgaaaaccattagctcccagatatgtgaggatgcctggacgacctaaaaaggagaggaaaaaagaaataactgagaagcgcaagacaactaaaacatgcaaattgggcactataataaggtgcagtaagtgcaaaggggtaggtcataacaagtcgacttgtgattccaggcagggagttcaatctgcacgaaatgctagtggtcctccaacaaaagctattgtatgccctctatttatacattgcattgtttctccttaaaatgtaatgaaactttaactgtcttttcttttccatgtaaaccaatagctagctgtacctggatcacaacagagctccactagttgccacaaaaggaaggcaaatgcatcagctagagaaatttctacagagaaggcaaagagaacatgcactggtcttggtttacaatctgggaagtcttcacaggatacagtcaatgtaggttaattacatcatctgaatctgggacctgaatttgtgcatactaacattttactcttctcttgtagcttgacatcggtaagaggagagtgataaggacttctgccactgcaagggtggcaacaattccagggggaacagcaacaatgaacctgcatgctcatggacgatcagcacatgcctcatcaaatgtgaccattactgtgacttctggaactgcaagtgctcatgtgcaaactcatgaaccagctcctagaagcaattcaccacaaagaaagagaaggctaccacaacttctactatcacccccaagatctgatggcaatgagtag
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| CDS seq | atgtttttagggttagagatggatgcagtagataagcttgtggtcagatttcatttcaatggtgaatttctttttgatggcaagaacacatgttatgtcaatggacgtgaagcattgtcttacattgaccgcaagaaggtttcccttaatgagattcgtggtcaagcaaaggagcattatgaggttgcagaaaaggcgttgtttcactggtgttttcctaggaaatcaatagccgatagactcagggttttgcatgatgataagacttgccttctaatggcaaagtataccatacaaggagttgtggcagatgtttatgttgagttggttgatattgaggagatagatgctgaggcaaacaaggatgaagttggtagtgattttgaggatgagatgaaagaaattagtgataacaatgatttagatgacaatactgtagaactgattggaggtaatgaggtcataatgataaattcttcaccaactcatgtaaacaagaatgatatgtgtggtggaaagagaaaggtgttcaagacatctagtgtaggtacaaaaagtaatggagatagtagctcagacagtgagtacctacctggtgattcatcttcttctggtgatgatgaagaggctgacgaaattgagaagacattcaaagagtttaagaggaaattcaaggctggtcatgtttctgagcttgatgagattacatgggctggtggggctgaaccaagtaggggtattgtgccgtatgtggtagaggaaggacatgagaccccatattatgactcaagtgatgatgaggcctcttttgatgaacaaggaagcagtggtgagttgctagctgtacctggatcacaacagagctccactagttgccacaaaaggaaggcaaatgcatcagctagagaaatttctacagagaaggcaaagagaacatgcactggtcttggtttacaatctgggaagtcttcacaggatacagtcaatcttgacatcggtaagaggagagtgataaggacttctgccactgcaagggtggcaacaattccagggggaacagcaacaatgaacctgcatgctcatggacgatcagcacatgcctcatcaaatgtgaccattactgtgacttctggaactgcaagtgctcatgtgcaaactcatgaaccagctcctagaagcaattcaccacaaagaaagagaaggctaccacaacttctactatcacccccaagatctgatggcaatgagtag
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| Protein seq | MFLGLEMDAVDKLVVRFHFNGEFLFDGKNTCYVNGREALSYIDRKKVSLNEIRGQAKEHYEVAEKALFHWCFPRKSIADRLRVLHDDKTCLLMAKYTIQGVVADVYVELVDIEEIDAEANKDEVGSDFEDEMKEISDNNDLDDNTVELIGGNEVIMINSSPTHVNKNDMCGGKRKVFKTSSVGTKSNGDSSSDSEYLPGDSSSSGDDEEADEIEKTFKEFKRKFKAGHVSELDEITWAGGAEPSRGIVPYVVEEGHETPYYDSSDDEASFDEQGSSGELLAVPGSQQSSTSCHKRKANASAREISTEKAKRTCTGLGLQSGKSSQDTVNLDIGKRRVIRTSATARVATIPGGTATMNLHAHGRSAHASSNVTITVTSGTASAHVQTHEPAPRSNSPQRKRRLPQLLLSPPRSDGNE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_06g0020500 | OsCMeo_06g0020500.01 | Chr06 | 22471267 | 22474785 | + | NAM | ||
| CDS seq | atgtttttagggttagagatggatgcagtagataagcttgtggtcagatttcatttcaatggtgaatttctttttgatggcaagaacacatgttatgtcaatggacgtgaagcattgtcttacattgaccgcaagaaggtttcccttaatgagattcgtggtcaagcaaaggagcattatgaggttgcagaaaaggcgttgtttcactggtgttttcctaggaaatcaatagccgatagactcagggttttgcatgatgataagacttgccttctaatggcaaagtataccatacaaggagttgtggcagatgtttatgttgagttggttgatattgaggagatagatgctgaggcaaacaaggatgaagttggtagtgattttgaggatgagatgaaagaaattagtgataacaatgatttagatgacaatactgtagaactgattggaggtaatgaggtcataatgataaattcttcaccaactcatgtaaacaagaatgatatgtgtggtggaaagagaaaggtgttcaagacatctagtgtaggtacaaaaagtaatggagatagtagctcagacagtgagtacctacctggtgattcatcttcttctggtgatgatgaagaggctgacgaaattgagaagacattcaaagagtttaagaggaaattcaaggctggtcatgtttctgagcttgatgagattacatgggctggtggggctgaaccaagtaggggtattgtgccgtatgtggtagaggaaggacatgagaccccatattatgactcaagtgatgatgaggcctcttttgatgaacaaggaagcagtggtgagttgctagctgtacctggatcacaacagagctccactagttgccacaaaaggaaggcaaatgcatcagctagagaaatttctacagagaaggcaaagagaacatgcactggtcttggtttacaatctgggaagtcttcacaggatacagtcaatcttgacatcggtaagaggagagtgataaggacttctgccactgcaagggtggcaacaattccagggggaacagcaacaatgaacctgcatgctcatggacgatcagcacatgcctcatcaaatgtgaccattactgtgacttctggaactgcaagtgctcatgtgcaaactcatgaaccagctcctagaagcaattcaccacaaagaaagagaaggctaccacaacttctactatcacccccaagatctgatggcaatgagtag
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| Protein seq | MFLGLEMDAVDKLVVRFHFNGEFLFDGKNTCYVNGREALSYIDRKKVSLNEIRGQAKEHYEVAEKALFHWCFPRKSIADRLRVLHDDKTCLLMAKYTIQGVVADVYVELVDIEEIDAEANKDEVGSDFEDEMKEISDNNDLDDNTVELIGGNEVIMINSSPTHVNKNDMCGGKRKVFKTSSVGTKSNGDSSSDSEYLPGDSSSSGDDEEADEIEKTFKEFKRKFKAGHVSELDEITWAGGAEPSRGIVPYVVEEGHETPYYDSSDDEASFDEQGSSGELLAVPGSQQSSTSCHKRKANASAREISTEKAKRTCTGLGLQSGKSSQDTVNLDIGKRRVIRTSATARVATIPGGTATMNLHAHGRSAHASSNVTITVTSGTASAHVQTHEPAPRSNSPQRKRRLPQLLLSPPRSDGNE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0704400 | RBH | 3.582252 | 2.907227 | 16.531290 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g49090 | RBH | 1.532195 | 1.938735 | 2.481115 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0704400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024060 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0011330 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024280 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0024410 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023230 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0463600 | RBH | 0 | 0 | 0.010236 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026260 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0026360 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0023660 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024050 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0026220 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G023490 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
