Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g49090 | OGI:01114160 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:29744300-29750636 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGGTTATTTCCCCGTCCGCTAAGGAGAGCGGCGTCGACTCCGACTCCTCGTGAGTTCGTTCGCCTTCGCCGCCGCCGACGCCGCCGATCCCCACCCATCCCGCGAGCGGAGCGGAGGAGGGGGGGCGCCGCCGTTCGTCCTGCTGCTTCCGCCGCATCCTGGTGAGCACCCACCGCATCCGCATCCTCTTTCCCATCTCTCTCTCTCGACCCGCACACTTTTTTCCCTCGAATTTTCGTTAACCCTAACTTTCTGTTCTAGAAATTTGCCGTAATCTTAATACTAACAGCAGTTTGTTTGTTAAGTTTGGGGGGTTCGCCCCCATGTCCCATGTTAGATCCGCCCCTGTGCGTAGAGGGTGTGCGCAAAATAAGGCAAAACCAATCTATAAGAAAATGCAGATTCAACTGAATATGGCATCTTATTTTCTGCCAATGCCCAACTGTTCCGAGTGATTAATATGTCATGCGCTCGTTTTTAAAAGAGTTATTGGCATGTGCAAGAATGTTCCATGTTTTCTTCACCAATGCGTAGCATGCTCGTGCCTTTTACTATTGAAATGCCTAAACTCACAACAATTGAGAACTGGAATTGGGTCTTTTGTAGTCTAAACTTGAGTGCTTTAGTGTATTTGATGCGACACAGCACGTAAATTAGGTTTTCGTGAGGGTTAGAGCTGGCTTTGTGGTTGAGGTCTAAATCGTGTTGCAGATCATGTCCTACACATTTAGACTTTTGCGGTTGGTTTTCTGGGTGATGTTAGCTAAGGAAGCATGCAATTTCATGAACCTAGCAGTCGATGCACTCATATTTACTGCTTTTTATGCCTTGTGATAATATTTGGATAGCATGTGAAGTGAGCGAATGTTCATGATATGTTCTTTTGGGGCCTGCTTAAGCAGAATTTTCTGCCAGGACCCTTATGTCTAGATAATACTCTGCCTCAGTGCATGCTTGTGAGTTCAGTGATAACCGTGCTCTTGTTTCCACACAAATAAGTTCTTTGTACCCTGACTGTACCTTTATTAGCAACAATTCCCATATGAACATAGCAAAAGATCGTGTGGAAATTCTGAAACGGTGCTTATGATTTCTATAGTTGACCCCTACCGCTTGTGTTTTTTTGTGAAATGGTAGATAACATTTTAAAAGCAGTTTGTGAAAATGTAAAGGAGAACTTTGTAACAGACTGTGTATATAATTATAGACGCAACACAGAAGATTTGGCATGTTCGGTTGCATCTTTGACAGGTTTAGGAACAATATGCACTAAAGAAAGGAAATAAGGTGGACATAATAACGTGAACACATATATTAGGTACTACTCCAAAAGAGTAGTGTACTAGTGTTCTGGTCTTCTGTTTAATATGTCATGTGCTCAATGAACTTAATGTTTTATCTCTGAGAGCAACTCCAGGTTGCAGCTTTCTATTATTCCCAGCTGATCTTTGCTGGTGATAACATTGCTTCTTGCCTTCTCCTAAGCTGCATATTTTTATCTCTGCTGACGATAAGTGCAAAGCAAGACAATAAAGAGTCCCATGAATTTATTTTCAAACTGTGAACATGAATATCTTTTTTCCAAAATAGACAGATGGTAAGAATCCAAATATAAATTTAGTGTTGCAATGGTCAGGGTCTCAGTACTTTCTTTGCAAGCTGGTTCTGAGATTCAAATATTTTTCATTCAACGAATATATTTGCATGGTGTTGGACTAGGACCATAGGTGATTTTGAGTTACTGGAAATGCACTAGTTGAGAACCCTTCTACATTGCATGTATTTCCGGAAATAATTGGGATAAGTGGCTGGTGGCTTTTTAGAACTCTTGGCATGATCAATTGCTTAACTTGGACCAATCAACCTCATATACATTTCTTCCCTAATGCAATTCCACAACTCAGAACCTTGGTTTGTAGTTCCATCCCAGCTACTACTATTGATTATATATACTTTCTCATATTTGCCCTGGTATAGAATTCAAATTTTGATTTCAATTGTATTTACTGTTTACCAGGTGCAAATTTATGTCTATAGTTGCAATTGTTCACACTTTCTATGGGAACCTGTGGATGAGGGATGGGTAAATTAAATTTCTAGGAGTAGTAAAGTTGTTGCATGTTGGAAATCAGTAGCATTATATGGTCCCGGCTAGTTGATACTTTTTATCTTTTATCCAAAGACATACATACATCAGCTGTGTCTCAACAAATTTACTTTTCTGTCCTCAATTGAATAGGTAGAGCTCCTGCCATCTAATTTCAGAATAAAAAGCTATGCGTTACTATCCACTGTTACGTGGTTCTGGGATAAAGTGATTGTCTTCTTGTGTTTGTTTATTTATTATTTATTGTTCTACTATCTCTTTTGCAGCGTCTTCATAACGGAAATTCAAGACAGGTGGCAAGACAAAATCCAATTGGACATAATGGACAATATATTAGTGGTATGCAAGTCCACATTAGCTGACGATGAATCAGCTAGTGAGGTATCTTCAGGGAGTGACAGTGACAGTGATTGCATTCTTGGAGATGATTGCCCATCAGATGATGATGAAGAGGCTGCACAGATACACAAGCGTTTTAAAGAACTGAAGGAGAAGTTAAAGACAGGAAAAGTAGATAAGTTGGATGATGTTGTTTTTGAAGCTGGTGCTGAACAAGATGGTAATGACACCCCATCTTTTGATAGCGATGATGAAGAGTCGGTAGAAGAGGTTGCAAGCGATGAAGAGGTTTCTGCTAGAAAACTCATCAAGTATCCAAGGTTCAAGGAGAAGCCTGGTGTTCCAACATTTGAATTAGGAATGACGTTTAGCTGCAAGAAGCAGTTCAAGAAAGCTATTACAGCATATGGTTTAGCTGAGAGGAAGGCGATCAACTTTGTCAAAGATGATCCTAAGAGGGTGAGGGCAAGATGTGACTGGCCTAGCTGCCCTTGGGTTTGCCTACTGTCAAAAAACTCAAGGACTGACGGTTGGCAGATAGCAACACTAGAAAATTCTCATCTATGCCCCTCTAGAAGAGATAACAAGCTGGTGACTTCTTCTAGGATTGCTGAGAAGTATGGCAAGTTTATAGTTGCAAATCCCTCATGGAAATTAGCACACATGAAGGCAACCGTACAAGAAGAGATGTTTGCTGATGTTAACATCTCCAAGCTGAAGAGAGCCAAATCCATTACGATGAAGAAAGCTATAAATGCAGCTAAGTGGCAGTATCAAAAGTTGTATAATTATCAGCTGGAGCTACTTAGAAGTAACCCTGGAAGCACTGTTGTGGTGGATAGAGAGGTAGATATGGATCCACCTGTTTTCAAAAGGATCTACATATGCTTAGATGCATGTAAGAAAGGCTTCCTAGCTGGGTGCAGAAAAGTGATAGGACTTGATGGCTGCTTCTTCAAGGGAGCAAAAAATGGAGAGCTCCTTTGTGCCATAGGAAAGGATGCCAACAATCAGATGTATCCAATTGCATGGGCAGTGGTGCACAAGGCGAACAAGGAAGAATGGCACTGGTTCTGTGGATTGTTGTGCAGTGACTTGCAAGTTGGTGATGGATCTGGCTGGGTGTTCATATCAAACCAACAGAAGGTATCATTCCATCTATACTCTGTCCAGTATTGAATTATTACAAATGCAAATGTGCCTACTAACATGTATGCTTTCCTGTAGGAAATTATTAATGCTATGGATAAATGGGCTCCACAAGCTGAACACAGGATCTGTGCTAGGCACATATATGCTAACTTGAAGAGACACTTCTATGACAATGAACACCAGAAGTTTTGGAAGTGTGCCAAGGCTCCGTGCATAACGTTGTTCGACTTGGCAATGGCAGAGCTGGTACAACTTACAACTCCTGCAGTACAAACCATCTTGAATAACCATCCGCAGCATTGGAGCCGAGCGTGGTTCAGGTCAGGCTCTAACTGTGACTTAGTTGACAACAGTATGTGTGAGTCCTTCAATAAATGGATTCTAGAGGCTAGGTTCTTTCCAATAATAACAATGCTTGAAACAATTAGAAGGAAAGTAATGGTTAGGATCCATGATCAGAGAACTATATCAGGTAGATGGACCACATCAGTTTGCCCAAACATTCTGAAAAAAATGAATGTATATATCACCGAGTCAGCTTTTTGTCATGCAACATGTAATGGAGGTGATAGCTTTGAAGTAAAACACCATGACAATAGGTTCACAGTACACCTAGACAAGAAGGAGTGTTCTTGTAGATATTGGCAGCTGTCAGGATTACCATGCCCTCATGCAATATCATGCATTTTCTTCAAGACTAAGACTAATTCACTGGATGAGTACATTGCTGAGTGTTATTCAGTGAAAGAGTTTAAGAAAATCTATAGTCAATGCCTGGAACCAGTAGAGGGCATGAGCAGCTGGCCAGAAGATGACAAAGAGCCACTTAATGCTCCTGGGTATATCAAGATGCCAGGAGAGACCAGAAGAGAATCCAATGAACCATTAAAAGCCACCAAACTGTCAAGGATTGGCTCAATCATCAGATGCAGCAAGTGCAAGCAAATTGGCCACAACAAATCCACTTGTAATAAGCATCATGGAGGAGGCTCTAGCACACCAGATTCTCTCCAAGTTGTAAATCCAGCTGATAATTTAATGCTCTCAAACACACAACAAAGCTCTAAACAAAGCAGGAAAAGAAAGTCACGTACAGCTGCTAACACCAATTCTGCAAGTCAGTCAAGGAAAACAGTGTCTTCAAAGCAAAAGGTTAGCTAGATCTAGTGCAATTTGAATTCAATTTATATTTGATTTCACTCAGAGCTAACAATTCTATGATTTGCAGGCACTAGTGGAATTGCATGCCCATTCTCAGGGTTCTACAAGTGCAACAATTAAGGTCACTTCTGGGCAAGCTTTTGTCAATGTTTCAACTCAAGAATCAGCAAAGTTCAAGCCAAAGAAGCTTACACCTGGTCTACTGCTGCTTATGCCTCCATGGGAATCTGACAAACTGTGATGTAATGTTAGATCAAGTTATCTGTTATTAAACTTGTGTGTGATGTAACGCCAGACAATTAGGCCATCTATTAGACTTATCTGTGATGTAATGCAAGACTTTATGGCCTGTCATTGTAGTTGCCAGACTTAATGGCATATTGATGCAGTCAAGAAAACCATCTGGGAGTTTTGGCTCCAGCTGTTCCAGCATCAACAATTTTCTGAAGTCCTCTGCAGGTTATTAGCAGTTTTTTGCTTCCTCTGTCCAGCGCAGAGACATCGAGTTGCTTAATGGGATGATGGCTCCTATTGTGATGGATGAGGTATCTGCTGAGTAAGTTCTGTAATAATTATAATCGTATACTTGACAAGAATGCATTTCCTGTGCTAAGTTAGCTTTGCATCATGTTTAATATTCTTTGTTTATATTGGACAGGAACGACAAAAATGAAAATGAAGATGAATAATCTGGTGAAGGAAAAATGGGCAATTGGGGAGGTGTGATATTTTCCTGATTTCCTCTTGGGCACTTCTGTAGTTTTGTTTGTTGAAAATGTTTGCTCATTTACAATTTTTATTCCTGGTATGGCAAATTCGTAACTATTTCTGTGCGTCCCTAATGTTTTATGCATATTCATCTAGTAGTTGACATCATACACGGACTGTGGTACGTGGTCTAATTTGTATGTCATCTCTAAATTATGAATTTATATGGAATTTGCAAAATTATGCTTTTTAGAAATGTCTACACATCCTATATGTTTGCTTGCTGTGCATCTTCATGTCTTGCTTTTTTGAGAGCAATACATTTATTATGTCTAATTCTTAAAAATGTATCTAGAGCTTGAACAAGCACTGGCTTATTCTGCTTTCTTTATATTCGGCAAGTTACCCATATATTTTAAGAACTCAAGGCTTTCTTTTCTGTGTGTTGTTGGGGCATGATATACTCAGATATGATCTCTTAAATATAGTTGGGATTGCCACCATATGTCGTACTTTTCTTGCCCGAGGTGTATATGCTTACTTTGCAGTCTTTTTCCTTCAGTTTGTATGCCATTTATCAGAGGGCATTGATTCTGGAAGCTATGTTGCAGCTCCAGGGTCAACAAAGGAACTCTACAACAAACAGAAGAAGAATACACAAGAGTGAAGGGAGACATGGAACATTGATGTGGGCAACTAGAGCTAACAACCAGCTAACAGCAGTCAGCACCTGCCGTGTTAGTATGTTTCTTCTTTTTTTTTATTTGTAATTGTTCATTGCAATTCCATTTTTGAAGATATTGAAAAGAAAGAAAACAATAGTTATTACAATATCGGAATCATGGGCAATATTTTCTTTGGATTCAACA
More
|
||||||||||
| CDS seq | ATGGACAATATATTAGTGGTATGCAAGTCCACATTAGCTGACGATGAATCAGCTAGTGAGGTATCTTCAGGGAGTGACAGTGACAGTGATTGCATTCTTGGAGATGATTGCCCATCAGATGATGATGAAGAGGCTGCACAGATACACAAGCGTTTTAAAGAACTGAAGGAGAAGTTAAAGACAGGAAAAGTAGATAAGTTGGATGATGTTGTTTTTGAAGCTGGTGCTGAACAAGATGGTAATGACACCCCATCTTTTGATAGCGATGATGAAGAGTCGGTAGAAGAGGTTGCAAGCGATGAAGAGGTTTCTGCTAGAAAACTCATCAAGTATCCAAGGTTCAAGGAGAAGCCTGGTGTTCCAACATTTGAATTAGGAATGACGTTTAGCTGCAAGAAGCAGTTCAAGAAAGCTATTACAGCATATGGTTTAGCTGAGAGGAAGGCGATCAACTTTGTCAAAGATGATCCTAAGAGGGTGAGGGCAAGATGTGACTGGCCTAGCTGCCCTTGGGTTTGCCTACTGTCAAAAAACTCAAGGACTGACGGTTGGCAGATAGCAACACTAGAAAATTCTCATCTATGCCCCTCTAGAAGAGATAACAAGCTGGTGACTTCTTCTAGGATTGCTGAGAAGTATGGCAAGTTTATAGTTGCAAATCCCTCATGGAAATTAGCACACATGAAGGCAACCGTACAAGAAGAGATGTTTGCTGATGTTAACATCTCCAAGCTGAAGAGAGCCAAATCCATTACGATGAAGAAAGCTATAAATGCAGCTAAGTGGCAGTATCAAAAGTTGTATAATTATCAGCTGGAGCTACTTAGAAGTAACCCTGGAAGCACTGTTGTGGTGGATAGAGAGGTAGATATGGATCCACCTGTTTTCAAAAGGATCTACATATGCTTAGATGCATGTAAGAAAGGCTTCCTAGCTGGGTGCAGAAAAGTGATAGGACTTGATGGCTGCTTCTTCAAGGGAGCAAAAAATGGAGAGCTCCTTTGTGCCATAGGAAAGGATGCCAACAATCAGATGTATCCAATTGCATGGGCAGTGGTGCACAAGGCGAACAAGGAAGAATGGCACTGGTTCTGTGGATTGTTGTGCAGTGACTTGCAAGTTGGTGATGGATCTGGCTGGGTGTTCATATCAAACCAACAGAAGGAAATTATTAATGCTATGGATAAATGGGCTCCACAAGCTGAACACAGGATCTGTGCTAGGCACATATATGCTAACTTGAAGAGACACTTCTATGACAATGAACACCAGAAGTTTTGGAAGTGTGCCAAGGCTCCGTGCATAACGTTGTTCGACTTGGCAATGGCAGAGCTGGTACAACTTACAACTCCTGCAGTACAAACCATCTTGAATAACCATCCGCAGCATTGGAGCCGAGCGTGGTTCAGGTCAGGCTCTAACTGTGACTTAGTTGACAACAGTATGTGTGAGTCCTTCAATAAATGGATTCTAGAGGCTAGGTTCTTTCCAATAATAACAATGCTTGAAACAATTAGAAGGAAAGTAATGGTTAGGATCCATGATCAGAGAACTATATCAGGTAGATGGACCACATCAGTTTGCCCAAACATTCTGAAAAAAATGAATGTATATATCACCGAGTCAGCTTTTTGTCATGCAACATGTAATGGAGGTGATAGCTTTGAAGTAAAACACCATGACAATAGGTTCACAGTACACCTAGACAAGAAGGAGTGTTCTTGTAGATATTGGCAGCTGTCAGGATTACCATGCCCTCATGCAATATCATGCATTTTCTTCAAGACTAAGACTAATTCACTGGATGAGTACATTGCTGAGTGTTATTCAGTGAAAGAGTTTAAGAAAATCTATAGTCAATGCCTGGAACCAGTAGAGGGCATGAGCAGCTGGCCAGAAGATGACAAAGAGCCACTTAATGCTCCTGGGTATATCAAGATGCCAGGAGAGACCAGAAGAGAATCCAATGAACCATTAAAAGCCACCAAACTGTCAAGGATTGGCTCAATCATCAGATGCAGCAAGTGCAAGCAAATTGGCCACAACAAATCCACTTGTAATAAGCATCATGGAGGAGGCTCTAGCACACCAGATTCTCTCCAAGTTGTAAATCCAGCTGATAATTTAATGCTCTCAAACACACAACAAAGCTCTAAACAAAGCAGGAAAAGAAAGTCACGTACAGCTGCTAACACCAATTCTGCAAGTCAGTCAAGGAAAACAGTGTCTTCAAAGCAAAAGGCACTAGTGGAATTGCATGCCCATTCTCAGGGTTCTACAAGTGCAACAATTAAGGTCACTTCTGGGCAAGCTTTTGTCAATGTTTCAACTCAAGAATCAGCAAAGTTCAAGCCAAAGAAGCTTACACCTGGTCTACTGCTGCTTATGCCTCCATGGGAATCTGACAAACTGTGA
More
|
||||||||||
| Protein seq | MDNILVVCKSTLADDESASEVSSGSDSDSDCILGDDCPSDDDEEAAQIHKRFKELKEKLKTGKVDKLDDVVFEAGAEQDGNDTPSFDSDDEESVEEVASDEEVSARKLIKYPRFKEKPGVPTFELGMTFSCKKQFKKAITAYGLAERKAINFVKDDPKRVRARCDWPSCPWVCLLSKNSRTDGWQIATLENSHLCPSRRDNKLVTSSRIAEKYGKFIVANPSWKLAHMKATVQEEMFADVNISKLKRAKSITMKKAINAAKWQYQKLYNYQLELLRSNPGSTVVVDREVDMDPPVFKRIYICLDACKKGFLAGCRKVIGLDGCFFKGAKNGELLCAIGKDANNQMYPIAWAVVHKANKEEWHWFCGLLCSDLQVGDGSGWVFISNQQKEIINAMDKWAPQAEHRICARHIYANLKRHFYDNEHQKFWKCAKAPCITLFDLAMAELVQLTTPAVQTILNNHPQHWSRAWFRSGSNCDLVDNSMCESFNKWILEARFFPIITMLETIRRKVMVRIHDQRTISGRWTTSVCPNILKKMNVYITESAFCHATCNGGDSFEVKHHDNRFTVHLDKKECSCRYWQLSGLPCPHAISCIFFKTKTNSLDEYIAECYSVKEFKKIYSQCLEPVEGMSSWPEDDKEPLNAPGYIKMPGETRRESNEPLKATKLSRIGSIIRCSKCKQIGHNKSTCNKHHGGGSSTPDSLQVVNPADNLMLSNTQQSSKQSRKRKSRTAANTNSASQSRKTVSSKQKALVELHAHSQGSTSATIKVTSGQAFVNVSTQESAKFKPKKLTPGLLLLMPPWESDKL |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g49090 | LOC_Os06g49090.1 | Chr06 | 29744300 | 29750632 | + | MSU_osa1r7 | ||
| CDS seq | ATGGACAATATATTAGTGGTATGCAAGTCCACATTAGCTGACGATGAATCAGCTAGTGAGGTATCTTCAGGGAGTGACAGTGACAGTGATTGCATTCTTGGAGATGATTGCCCATCAGATGATGATGAAGAGGCTGCACAGATACACAAGCGTTTTAAAGAACTGAAGGAGAAGTTAAAGACAGGAAAAGTAGATAAGTTGGATGATGTTGTTTTTGAAGCTGGTGCTGAACAAGATGGTAATGACACCCCATCTTTTGATAGCGATGATGAAGAGTCGGTAGAAGAGGTTGCAAGCGATGAAGAGGTTTCTGCTAGAAAACTCATCAAGTATCCAAGGTTCAAGGAGAAGCCTGGTGTTCCAACATTTGAATTAGGAATGACGTTTAGCTGCAAGAAGCAGTTCAAGAAAGCTATTACAGCATATGGTTTAGCTGAGAGGAAGGCGATCAACTTTGTCAAAGATGATCCTAAGAGGGTGAGGGCAAGATGTGACTGGCCTAGCTGCCCTTGGGTTTGCCTACTGTCAAAAAACTCAAGGACTGACGGTTGGCAGATAGCAACACTAGAAAATTCTCATCTATGCCCCTCTAGAAGAGATAACAAGCTGGTGACTTCTTCTAGGATTGCTGAGAAGTATGGCAAGTTTATAGTTGCAAATCCCTCATGGAAATTAGCACACATGAAGGCAACCGTACAAGAAGAGATGTTTGCTGATGTTAACATCTCCAAGCTGAAGAGAGCCAAATCCATTACGATGAAGAAAGCTATAAATGCAGCTAAGTGGCAGTATCAAAAGTTGTATAATTATCAGCTGGAGCTACTTAGAAGTAACCCTGGAAGCACTGTTGTGGTGGATAGAGAGGTAGATATGGATCCACCTGTTTTCAAAAGGATCTACATATGCTTAGATGCATGTAAGAAAGGCTTCCTAGCTGGGTGCAGAAAAGTGATAGGACTTGATGGCTGCTTCTTCAAGGGAGCAAAAAATGGAGAGCTCCTTTGTGCCATAGGAAAGGATGCCAACAATCAGATGTATCCAATTGCATGGGCAGTGGTGCACAAGGCGAACAAGGAAGAATGGCACTGGTTCTGTGGATTGTTGTGCAGTGACTTGCAAGTTGGTGATGGATCTGGCTGGGTGTTCATATCAAACCAACAGAAGGAAATTATTAATGCTATGGATAAATGGGCTCCACAAGCTGAACACAGGATCTGTGCTAGGCACATATATGCTAACTTGAAGAGACACTTCTATGACAATGAACACCAGAAGTTTTGGAAGTGTGCCAAGGCTCCGTGCATAACGTTGTTCGACTTGGCAATGGCAGAGCTGGTACAACTTACAACTCCTGCAGTACAAACCATCTTGAATAACCATCCGCAGCATTGGAGCCGAGCGTGGTTCAGGTCAGGCTCTAACTGTGACTTAGTTGACAACAGTATGTGTGAGTCCTTCAATAAATGGATTCTAGAGGCTAGGTTCTTTCCAATAATAACAATGCTTGAAACAATTAGAAGGAAAGTAATGGTTAGGATCCATGATCAGAGAACTATATCAGGTAGATGGACCACATCAGTTTGCCCAAACATTCTGAAAAAAATGAATGTATATATCACCGAGTCAGCTTTTTGTCATGCAACATGTAATGGAGGTGATAGCTTTGAAGTAAAACACCATGACAATAGGTTCACAGTACACCTAGACAAGAAGGAGTGTTCTTGTAGATATTGGCAGCTGTCAGGATTACCATGCCCTCATGCAATATCATGCATTTTCTTCAAGACTAAGACTAATTCACTGGATGAGTACATTGCTGAGTGTTATTCAGTGAAAGAGTTTAAGAAAATCTATAGTCAATGCCTGGAACCAGTAGAGGGCATGAGCAGCTGGCCAGAAGATGACAAAGAGCCACTTAATGCTCCTGGGTATATCAAGATGCCAGGAGAGACCAGAAGAGAATCCAATGAACCATTAAAAGCCACCAAACTGTCAAGGATTGGCTCAATCATCAGATGCAGCAAGTGCAAGCAAATTGGCCACAACAAATCCACTTGTAATAAGCATCATGGAGGAGGCTCTAGCACACCAGATTCTCTCCAAGTTGTAAATCCAGCTGATAATTTAATGCTCTCAAACACACAACAAAGCTCTAAACAAAGCAGGAAAAGAAAGTCACGTACAGCTGCTAACACCAATTCTGCAAGTCAGTCAAGGAAAACAGTGTCTTCAAAGCAAAAGGCACTAGTGGAATTGCATGCCCATTCTCAGGGTTCTACAAGTGCAACAATTAAGGTCACTTCTGGGCAAGCTTTTGTCAATGTTTCAACTCAAGAATCAGCAAAGTTCAAGCCAAAGAAGCTTACACCTGGTCTACTGCTGCTTATGCCTCCATGGGAATCTGACAAACTGTGA
More
|
|||||||
| Protein seq | MDNILVVCKSTLADDESASEVSSGSDSDSDCILGDDCPSDDDEEAAQIHKRFKELKEKLKTGKVDKLDDVVFEAGAEQDGNDTPSFDSDDEESVEEVASDEEVSARKLIKYPRFKEKPGVPTFELGMTFSCKKQFKKAITAYGLAERKAINFVKDDPKRVRARCDWPSCPWVCLLSKNSRTDGWQIATLENSHLCPSRRDNKLVTSSRIAEKYGKFIVANPSWKLAHMKATVQEEMFADVNISKLKRAKSITMKKAINAAKWQYQKLYNYQLELLRSNPGSTVVVDREVDMDPPVFKRIYICLDACKKGFLAGCRKVIGLDGCFFKGAKNGELLCAIGKDANNQMYPIAWAVVHKANKEEWHWFCGLLCSDLQVGDGSGWVFISNQQKEIINAMDKWAPQAEHRICARHIYANLKRHFYDNEHQKFWKCAKAPCITLFDLAMAELVQLTTPAVQTILNNHPQHWSRAWFRSGSNCDLVDNSMCESFNKWILEARFFPIITMLETIRRKVMVRIHDQRTISGRWTTSVCPNILKKMNVYITESAFCHATCNGGDSFEVKHHDNRFTVHLDKKECSCRYWQLSGLPCPHAISCIFFKTKTNSLDEYIAECYSVKEFKKIYSQCLEPVEGMSSWPEDDKEPLNAPGYIKMPGETRRESNEPLKATKLSRIGSIIRCSKCKQIGHNKSTCNKHHGGGSSTPDSLQVVNPADNLMLSNTQQSSKQSRKRKSRTAANTNSASQSRKTVSSKQKALVELHAHSQGSTSATIKVTSGQAFVNVSTQESAKFKPKKLTPGLLLLMPPWESDKL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g49090 | LOC_Os06g49090.2 | Chr06 | 29744300 | 29750636 | + | MSU_osa1r7 | ||
| CDS seq | ATGGACAATATATTAGTGGTATGCAAGTCCACATTAGCTGACGATGAATCAGCTAGTGAGGTATCTTCAGGGAGTGACAGTGACAGTGATTGCATTCTTGGAGATGATTGCCCATCAGATGATGATGAAGAGGCTGCACAGATACACAAGCGTTTTAAAGAACTGAAGGAGAAGTTAAAGACAGGAAAAGTAGATAAGTTGGATGATGTTGTTTTTGAAGCTGGTGCTGAACAAGATGGTAATGACACCCCATCTTTTGATAGCGATGATGAAGAGTCGGTAGAAGAGGTTGCAAGCGATGAAGAGGTTTCTGCTAGAAAACTCATCAAGTATCCAAGGTTCAAGGAGAAGCCTGGTGTTCCAACATTTGAATTAGGAATGACGTTTAGCTGCAAGAAGCAGTTCAAGAAAGCTATTACAGCATATGGTTTAGCTGAGAGGAAGGCGATCAACTTTGTCAAAGATGATCCTAAGAGGGTGAGGGCAAGATGTGACTGGCCTAGCTGCCCTTGGGTTTGCCTACTGTCAAAAAACTCAAGGACTGACGGTTGGCAGATAGCAACACTAGAAAATTCTCATCTATGCCCCTCTAGAAGAGATAACAAGCTGGTGACTTCTTCTAGGATTGCTGAGAAGTATGGCAAGTTTATAGTTGCAAATCCCTCATGGAAATTAGCACACATGAAGGCAACCGTACAAGAAGAGATGTTTGCTGATGTTAACATCTCCAAGCTGAAGAGAGCCAAATCCATTACGATGAAGAAAGCTATAAATGCAGCTAAGTGGCAGTATCAAAAGTTGTATAATTATCAGCTGGAGCTACTTAGAAGTAACCCTGGAAGCACTGTTGTGGTGGATAGAGAGGTAGATATGGATCCACCTGTTTTCAAAAGGATCTACATATGCTTAGATGCATGTAAGAAAGGCTTCCTAGCTGGGTGCAGAAAAGTGATAGGACTTGATGGCTGCTTCTTCAAGGGAGCAAAAAATGGAGAGCTCCTTTGTGCCATAGGAAAGGATGCCAACAATCAGATGTATCCAATTGCATGGGCAGTGGTGCACAAGGCGAACAAGGAAGAATGGCACTGGTTCTGTGGATTGTTGTGCAGTGACTTGCAAGTTGGTGATGGATCTGGCTGGGTGTTCATATCAAACCAACAGAAGGAAATTATTAATGCTATGGATAAATGGGCTCCACAAGCTGAACACAGGATCTGTGCTAGGCACATATATGCTAACTTGAAGAGACACTTCTATGACAATGAACACCAGAAGTTTTGGAAGTGTGCCAAGGCTCCGTGCATAACGTTGTTCGACTTGGCAATGGCAGAGCTGGTACAACTTACAACTCCTGCAGTACAAACCATCTTGAATAACCATCCGCAGCATTGGAGCCGAGCGTGGTTCAGGTCAGGCTCTAACTGTGACTTAGTTGACAACAGTATGTGTGAGTCCTTCAATAAATGGATTCTAGAGGCTAGGTTCTTTCCAATAATAACAATGCTTGAAACAATTAGAAGGAAAGTAATGGTTAGGATCCATGATCAGAGAACTATATCAGGTAGATGGACCACATCAGTTTGCCCAAACATTCTGAAAAAAATGAATGTATATATCACCGAGTCAGCTTTTTGTCATGCAACATGTAATGGAGGTGATAGCTTTGAAGTAAAACACCATGACAATAGGTTCACAGTACACCTAGACAAGAAGGAGTGTTCTTGTAGATATTGGCAGCTGTCAGGATTACCATGCCCTCATGCAATATCATGCATTTTCTTCAAGACTAAGACTAATTCACTGGATGAGTACATTGCTGAGTGTTATTCAGTGAAAGAGTTTAAGAAAATCTATAGTCAATGCCTGGAACCAGTAGAGGGCATGAGCAGCTGGCCAGAAGATGACAAAGAGCCACTTAATGCTCCTGGGTATATCAAGATGCCAGGAGAGACCAGAAGAGAATCCAATGAACCATTAAAAGCCACCAAACTGTCAAGGATTGGCTCAATCATCAGATGCAGCAAGTGCAAGCAAATTGGCCACAACAAATCCACTTGTAATAAGCATCATGGAGGAGGCTCTAGCACACCAGATTCTCTCCAAGTTGTAAATCCAGCTGATAATTTAATGCTCTCAAACACACAACAAAGCTCTAAACAAAGCAGGAAAAGAAAGTCACGTACAGCTGCTAACACCAATTCTGCAAGTCAGTCAAGGAAAACAGTGTCTTCAAAGCAAAAGGCACTAGTGGAATTGCATGCCCATTCTCAGGGTTCTACAAGTGCAACAATTAAGGTCACTTCTGGGCAAGCTTTTGTCAATGTTTCAACTCAAGAATCAGCAAAGTTCAAGCCAAAGAAGCTTACACCTGGTCTACTGCTGCTTATGCCTCCATGGGAATCTGACAAACTGTGA
More
|
|||||||
| Protein seq | MDNILVVCKSTLADDESASEVSSGSDSDSDCILGDDCPSDDDEEAAQIHKRFKELKEKLKTGKVDKLDDVVFEAGAEQDGNDTPSFDSDDEESVEEVASDEEVSARKLIKYPRFKEKPGVPTFELGMTFSCKKQFKKAITAYGLAERKAINFVKDDPKRVRARCDWPSCPWVCLLSKNSRTDGWQIATLENSHLCPSRRDNKLVTSSRIAEKYGKFIVANPSWKLAHMKATVQEEMFADVNISKLKRAKSITMKKAINAAKWQYQKLYNYQLELLRSNPGSTVVVDREVDMDPPVFKRIYICLDACKKGFLAGCRKVIGLDGCFFKGAKNGELLCAIGKDANNQMYPIAWAVVHKANKEEWHWFCGLLCSDLQVGDGSGWVFISNQQKEIINAMDKWAPQAEHRICARHIYANLKRHFYDNEHQKFWKCAKAPCITLFDLAMAELVQLTTPAVQTILNNHPQHWSRAWFRSGSNCDLVDNSMCESFNKWILEARFFPIITMLETIRRKVMVRIHDQRTISGRWTTSVCPNILKKMNVYITESAFCHATCNGGDSFEVKHHDNRFTVHLDKKECSCRYWQLSGLPCPHAISCIFFKTKTNSLDEYIAECYSVKEFKKIYSQCLEPVEGMSSWPEDDKEPLNAPGYIKMPGETRRESNEPLKATKLSRIGSIIRCSKCKQIGHNKSTCNKHHGGGSSTPDSLQVVNPADNLMLSNTQQSSKQSRKRKSRTAANTNSASQSRKTVSSKQKALVELHAHSQGSTSATIKVTSGQAFVNVSTQESAKFKPKKLTPGLLLLMPPWESDKL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.532195 | 1.938735 | 2.481115 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0704400 | RBH | 3.582252 | 2.907227 | 16.531290 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0704400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020500 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0026410 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0467700 | RBH | 15.4553785 | 24.3381815 | 32.37723 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0025820 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0424400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026260 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0026360 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0025990 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0026630 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0026220 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
