Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_06g0019200 | OGI:06058620 | 12/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr06:20783797-20789464 | ||||||||
| Gene Symbol | OsSTRL4, STRL4 | ||||||||||
| DNA seq | accaaggtgtgctcatgtgcacaacctcatggaatctattctcggcagtagagtatcttacaaaggtgtgcttgaatgccacatggaaaagatggaagctagttaattaataacattacaaacagagaatttatgagaaaattatttgtgtgcctttttaagtttctttccatccatttcacactcctcacttctgcatcatcgcagcatgcccattccattacctgaatgtgagttgatcgcattgccgctgactcatagccccaactatagcctggagcatatccccacccaaatcgaaaccctagtaaggaaactattcattattaaagaccaccgggtttcaaaattactataccctaataactgaaaatattaaaattaaactaaatttaaatagaaaaaaataattttaatggatttcaatcaattttgaagggaagctatagcatggggaggcagttgtaaccagcaaaataatatgctcttcactttaaattttgttgaaattcatttaagatttaaatgtgacttaaggagaaaattaccaacagttagttcaggtggtttgggtaattttaaccactataagaattttttataatgaaactcaaaaactcaaagccaacaattaacagaatccgcatgcatagtgatcaattcaaaacaaaaacccatgggtatggctttgttaggggttgacgaaagcttagacagagaaaggatggggtcataatataggagcagagctcttattcgaaaaagcacacgaggaattcttttatcaagatttttggcgaaattccactttcttaaatccctcaaatattatatatgcatgaatataacaaatgtatgtatcgtaaatcatacacaatcgattctagacatagctgacattcttgtgcatatgcttaacatgaccgaattgcttcaacttgctagcttatttgaaaaagttctgatgaaaaaaacagtagcaaagttcgcttcacattttaaatttggatgctttccctcttactgttgaaattgacatgacctcgccgaaaaggaacaatggaagcctctccatgattggttctcctttaatcacgttgtactttatgtttattcagtagcccctagttgctaaagcaactttgatagccacagcccccagacagcaaaccatgcagacgtgcacatatagctagctagctacttccatgataccactttaaatttgcccagttgcaatacaatccccaccctgagaccaaaagccttaagcctaattgaccacgttaactgaatgaacacatagtccacagtttaatttgttcccaagcaaatgatccatatatgcatgcatgtaacaggccaatgttaacgccatatgtgtaaaaaaaagtggtaacatatattattcttggagacgacagagcataaaagcaagcaaggtgtgtatatcatcatgcatgcataatgctttaaaggcattacgccatgcaattttatctcagcatctcttgattatatgtctgtgcgactgtgacctaattctaattctatatatctatcgtaacagaataatctctatctcgccgccactaccaacttccatttctattctcctgtaaggatagatagagcaccattgtccctgcttgcggctcgacttggacttcttcgacggattacaaaggcatagtgttatcgaacttacactcatcttctcaatgctagtagcattccttgaaatatatatgttgcctaagaaaatctaatctgaaacttacaaaaaaaaatgcttccaactactagttccttaattaatctcaaaatagaaaatcagtaactgtttttgaaaaactgtaacaatgccgaatggagcccaatatctatattttggtccatcgaaatatgttgccgggatatgcaccaaaaacaatggtgtggtttttatgtcgaaacattaatatacaactcgagtgatgaggcaagggactgcgtatcatgacagtgcaaggattgttgaatgagcaagccaaaaagaaaaacagaaagatgatcagttaatttctttgagctagacagctagtttcaagtgaagaaccactctcgcggatgacatacgcaacctggagtggatgagtggagaagttttgaaagatccttcattctctctctctctttccagatgttccacaatagatgaaagattttagttagccaaagcttctcctttgttctgagggccgttttggattagtgccaaaacggtgccctaccaatattatggtagtttgaacagtgcatatggtagttttggtttgaatccaaatcattggtattgccaatgtctagtttgatattttctatactctactcaaagcttgttctaaattggtctccaaccaaatacaactctaccctaccaaaatattggtagtgccaaaacttggcttttggcactaccaatattttggtagggtattaaaccaaacaaaccctgaatttttcattgcctctgctgaccaccattagttccattattgaatgaaaggaggtaaggtctgggaggttattgtattgaaaccatgtaattgttgtaacaatttttaaccaaggacatgagttctgacatttatttcaagaagaagagaaatgcattggaccacaaatagagaatgcaagacgacagggtggctccagatggaacaccaacaccaaagaaagaaacctataactgagttcctttcaagaaacacaacaaggtaggtgaggaggcgtcctcaattaaaatagtattgatgatgacgaccatgcatcatcatggcgacgtagaagctctgacttcaccatggcaaccttcatccgtcgcttggcataaacatcaccagcacgaacagccgtaattgttacaaagttaatgtataaatgtacgcattattatgttaagacttctatactgtatataatgtttgcatcttcccccaagacactctaaagtgtggacttggtttggcttgtggcactccaaaatggtggcaatcaatctgacacaaacctctattctacttctctaatatttattccaataccatgtaggatgatcttattaagtgtgaaattagacaaaaaaatgtggggaatgatgaattcgtttgagagatcaccgttcgataagatcacttgagaggccaagtagtataaaatgttacaaagttgtgcctggcaatttggtggtgcttctaaggatgccacacataaagcagaagtatctcatttaggtccaattcagatttcagaatacgggagttctctcagtttcttgcagcaaactaggaatatattgacctttgttttaaaagtttatgtaaaattcttagtagttccaaaacataagaacgattagagtgacacttactggaactgactgcgctccaaaattttctaactcatattgactatattgagactggtggtcaaactcattttccggccggttgacttttttgtgttactctcattgatcgctttatcatatattctaatatgtcgatctaattgaacgacataaagaactgattctagcccacattatggtctgtttcgttacatactttacattattccctttttatctaaaaccacgagctctttttttctgcaaaagttgacagcaacagcgtggggtgtacagtaaaggcagggataaaagaactgcacaatcataagctctctctctccttttggattgtcttctagtttagagtcattattattatttgtatgaattttgtcttttatagcagaaaagatattaatacaaacaaatgcatggacattagatcaagacccaaaggacagaaaaaagtgaccaaaagatgacagaagcttgagtcaccttaccagcaggcacccacatggtatacttcgcgacagtgtagtatggtctgtgtacttgtttcacattttcagcttggtagtcatgaaatgaacttagaattaaactttctagtttatccttacagaagaactacatgtaccgaaagtgaacctatatgagttaagagtggctttagtttggtgggctggtgtggtgaccatgggttggacctatcctgtgctggaaacatcatttctagaaagaacaacgtgttgctgggcgcagccacaagtatgaaagtcggtgacgatggtggccagggtacttattcataagaatgaagaaaagagtagtgaaaccgaccccgacagaagtcggcacagccagacaaacactctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcccctgatcccctaagtgaagacgtgacatctcttgatgttgtcccagaaagcaatcaaggaaaggagataacctgtgggaggagctcgtccggagagaacaccgtccacctcctacacattccgtcgaacaggtggcgggcgcccacgcgacgggactgtagagaagcgagagacaccaaattacaccactgaaacacagagaagaaacaagagggcctccacgcatcggcgccgcctcacctcactcgccgtcgccggagaagatacgctccccgcaccgccgccgctggcacaccaccgtcgcgcgctgcggtgcgctgatctgatcgctgggctagagggtggatgtgactgaattaaattaactgggcttaaaatgaagcaactaactgaattgggcctggttacaaagcccgcacccacctgagcccatcctatttaggaataagttcaccgaaggtccctcaacttaacagcgagattttttgaagtccttaaccacaaaaccagaaatgtttacccctaaacttactaaaaccgttcactcaaggtcctacggcagtatatataggtggtttcgctgacgtggcatcctagtcagcaatttttttttaaaaaaaagtacatgggacccacatgacaactgcacattttttttcttctcttttcttctccttctcttctcttctctattcctcttcttcagtgaaagaggccggcggcaggcggagcggtgcgcgcggatgcgggtggcatagcagagggcgagcgcggcagcggagtgacggcgggccgagaagtggagcgcgagcgcggccacgggcaaagaagcggagggcgagcgcggcggcggagcgggcggagggcgagcgtggcaatggcacacgattaactgcatgatgcatgcacactgtgcagtatatatgaacatgaccgattgattctatctggtacgtgctgctgctgtcggtacgtgctgctgctatcggtgaagtagacgtcgccggtcctctggtcgacatcgaggccgttgaggaagttgaacggcacgccggcggtctccgtcgtcaccacctcggccagcccaccgcgcgccggcgccctcaggaggcccaggtactcgtcggccacgtacaggtcgccggaggcgtggtggaactgcagccccagcggccgcccgcacatgctctccggcaccaccagcttcttctccggcgagcaaatgccgacgctcctggtggtgaacaaatcgtcagtgcatgcgagatcatgcgcgcggcggcgcagctagatggatatggatagcttacttacgggcgccgacagcgtcat
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| CDS seq | atgacgctgtcggcgcccctgcgccgccgcgcgcatgatctcgcatgcactgacgatttgttcaccaccaggagcgtcggcatttgctcgccggagaagaagctggtggtgccggagagcatgtgcgggcggccgctggggctgcagttccaccacgcctccggcgacctgtacgtggccgacgagtacctgggcctcctgagggcgccggcgcgcggtgggctggccgaggtggtgacgacggagaccgccggcgtgccgttcaacttcctcaacggcctcgatgtcgaccagaggaccggcgacgtctacttcaccgatagcagcagcacgtaccgacagcagcagcaccccagcgatcagatcagcgcaccgcagcgcgcgacggtggtgtgccagcggcggcggtgcggggagcgtatcttctccggcgacggcgagtga
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| Protein seq | MTLSAPLRRRAHDLACTDDLFTTRSVGICSPEKKLVVPESMCGRPLGLQFHHASGDLYVADEYLGLLRAPARGGLAEVVTTETAGVPFNFLNGLDVDQRTGDVYFTDSSSTYRQQQHPSDQISAPQRATVVCQRRRCGERIFSGDGE |
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| Function | Protein STRICTOSIDINE SYNTHASE-LIKE 3 [UniProtKB/Swiss-Prot:Q8VWF6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_06g0019200 | OsCMeo_06g0019200.01 | Chr06 | 20783797 | 20789464 | - | NAM | ||
| CDS seq | atgacgctgtcggcgcccctgcgccgccgcgcgcatgatctcgcatgcactgacgatttgttcaccaccaggagcgtcggcatttgctcgccggagaagaagctggtggtgccggagagcatgtgcgggcggccgctggggctgcagttccaccacgcctccggcgacctgtacgtggccgacgagtacctgggcctcctgagggcgccggcgcgcggtgggctggccgaggtggtgacgacggagaccgccggcgtgccgttcaacttcctcaacggcctcgatgtcgaccagaggaccggcgacgtctacttcaccgatagcagcagcacgtaccgacagcagcagcaccccagcgatcagatcagcgcaccgcagcgcgcgacggtggtgtgccagcggcggcggtgcggggagcgtatcttctccggcgacggcgagtga
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| Protein seq | MTLSAPLRRRAHDLACTDDLFTTRSVGICSPEKKLVVPESMCGRPLGLQFHHASGDLYVADEYLGLLRAPARGGLAEVVTTETAGVPFNFLNGLDVDQRTGDVYFTDSSSTYRQQQHPSDQISAPQRATVVCQRRRCGERIFSGDGE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.505578 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0623700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g35950 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0623700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0019270 | RBH | 0.0 | 3.018536 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0019130 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0015570 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0022460 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0019340 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0332400 | SBH | 0.111729 | 0.0102675 | 0.1239235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0018830 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0306600 | RBH | 2.1666825 | 0.723385 | 3.1210105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0019310 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0019250 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0018910 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0019610 | RBH | 0.0 | 0.0 | 0.264934 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0019050 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G022420 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0022670 | SBH | 0.0 | 0.0 | 0.0 |
