Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0017490 | OGI:05055870 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:21257151-21260349 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccgccccccaatcccaaaccccgcagcagctccacctgcgccgccgtcggatcgacgggaaagaaccgcggaccgccgcgcttgcaccagcatccagatcagcgccgcctcgccgatctcctctgcgccgccgcccacgatttgctgccggcgctcacaaattgtcgtcgtcacgaaatcgcaaccctaatctccccacaccgcgccgccgcccctcgcctctccaccgcaccggtctcctctgcgagcgccgtcgctccctgcctctccaccgcgccgtcgtcctcgccgccaccctacggctctccaccacactgccatccactacgccaccctccgctcgtcgtgccgcccacatcgacgggagactgcccgttaagggcgagcccgtcctccgtcgtcttcccgtcgcacgcggaggcagcgatattctccttcgcccacgattttcttcgtcttcttcgtctctctccccttctcccacggcttgctgctgctgcccatatcagccggaccccatctccggcggcatccctccccaggcggcaggcgacggtgtgtgctgatgcccccacgtcggcggtgtcctggcggtcgtctcccgtggcggcggcgtcctgtcctgtcaagcggcgtgctgacaacagaaacacttataggatttggcgctgaaaattttttatgccctttgaacaacaaagcatgttcattatattgacatcaacaaaaatttctgctatcagatgtgctgcaaaaatcgagatgttgaggttatataatttagtgctgaaaagttaatgttctgtttcaggtgcctgcaatgattttatctagacatatgctggtgctgagtccattgcttgccttgatgtcggatcaactgaggaagctccctgcatttatgcaagatggcctttttgcgagcagttaggtaagggcagaatgttcacagttgctgcttgtgctattaattctaattttgatcattatgttacactaatgactatgggagcagccgcattctgcatcgcaccgttgggtcggatgctttctgcacgcagcataggggcccatatgcttccagacaacttgctatcacctaatcccattattctagacaactgcattataatttgactttgtgttgtttgacaaatttgtcagatttaggcatgagttatgaactccttgtatggtgctaaaaaattttgggcatatatatgacgtgcaaagagtagtttagacccaatgaaactttgtagagtattattgtttatgcctgcagttgcttcaaagagaacaaattcaatctatctctgttgattgtgtttcttttcaagccaccttataatttttagcacctaatgaagccaactcttctattgggtatttcaaggaagatatgtggatctagctttcaaaatagaaattgtttctggtggctgtgcctgtgtatccttagttgctgcttaggataaataagtctgcatggctcatatcatcatctggaatatttttgtttcatatcatctgaatttcaattaataaagtctgcatccggttctatttcactattggtggtttctaacagtcaatgatacttgaaatcgagtttgtagtctgcatctggttctacattctttggtggcctcaaattgttatcacatatgcagattcactattggtggcctcaaagtgttatcacatatgcagattcactattgagtctgtgataattaattatttgttatgacatttctgttatatcttatatactcccttctttgtaattaacagtaatggaattattgttagttcaatttgaaccaaccaacatatcatataataaaaacaaatggagcatgaaaatagcatttttcgaggttgtgactaaatcccttgaacaaagaactttaaaatagaaagggaaacaagaactaattcagcttatgtgactgcttgttgcaggccgttgatgttttgtgagtaagagctggagataaaatttgaacttgtcagtgctgttttttccgttttgctatttgcccagccagtgcccaatgctgttaattgtactgttcaatgctgatttgttaaaaaccataaatttaactaacacaatttttttggagacaatgatttttttctaaagtaggggaatgacaccctagagtgagtttgtttttctatgtatgacatcactcaccagagtcatcttatatgattatgagttaatcacgatatcttttttatagatcaggagaacatattcttatcatctctatggttaatctgtatagttatagataatagagggtttgtccatattccacatataggaagttatttttattttcattttacttctcagtattagctgaaatgttaatttatttggctgcttcaaagtgagtctgactggtgtgtacaaatttacataaaactgaatatgaaggagcacaagtggactaggactgagcatgctaattcaaacaggcatccagtgtgaactatgtggggctgtgggcaaattcagtaaataacctgctcgtggcaaattgaggactaaaattttgattttgaggtatacgatctgatctcttcgcaccttcaattttgtcttcttaggtgtgtcatgtaagtaccagattaatacgtgatagattgaggtatagtcattgacagtttgccactgaaatggagtcttttgggtgatggcttgcatttcaaaatgcactggtataatatgaaaattgcacagaacaagcattgacatttttcatgtacaaacaagtttaaaaatgttatgcagctatgttgtttccaagtttagcatatgtatctaagaaagctatgttattacttattgtaaattgtggagataacatgtaatgttttgatttatgcagcaccatcggtgcctttttggtgtgggctgtcaagaccatcgacagcttcctcccttgtccccaccggccatccgctccgcaaggtgatagacgttttccttgtatcgtgacgttcatgaataatgtagtcatgccatatgaagcaattgtatacttgtatgtgacctttttggcggttgattgaaaagtaaatgattggatctgggtgattgaataaagtgcttttagtattcagcttgatttcatgaagcagactcatcatgaattactatgtgttctcccaattgcca
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| CDS seq | atgattttatctagacatatgctggtgctgagtccattgcttgccttgatgtcggatcaactgaggaagctccctgcatttatgcaagatggcctttttgcgagcatattagctgaaatcaccatcggtgcctttttggtgtgggctgtcaagaccatcgacagcttcctcccttgtccccaccggccatccgctccgcaaggtgatagacgttttccttgtatcgtgacgttcatgaataatgtagtcatgccatatgaagcaattgtatacttgtatgtgacctttttggcggttgattga |
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| Protein seq | MILSRHMLVLSPLLALMSDQLRKLPAFMQDGLFASILAEITIGAFLVWAVKTIDSFLPCPHRPSAPQGDRRFPCIVTFMNNVVMPYEAIVYLYVTFLAVD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0017490 | OsCMeo_05g0017490.02 | Chr05 | 21257971 | 21260349 | + | NAM | ||
| CDS seq | atgattttatctagacatatgctggtgctgagtccattgcttgccttgatgtcggatcaactgaggaagctccctgcatttatgcaagatggcctttttgcgagcatattagctgaaatcaccatcggtgcctttttggtgtgggctgtcaagaccatcgacagcttcctcccttgtccccaccggccatccgctccgcaaggtgatagacgttttccttgtatcgtgacgttcatgaataatgtagtcatgccatatgaagcaattgtatacttgtatgtgacctttttggcggttgattga
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| Protein seq | MILSRHMLVLSPLLALMSDQLRKLPAFMQDGLFASILAEITIGAFLVWAVKTIDSFLPCPHRPSAPQGDRRFPCIVTFMNNVVMPYEAIVYLYVTFLAVD |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0017490 | OsCMeo_05g0017490.01 | Chr05 | 21257971 | 21260349 | + | NAM | ||
| CDS seq | atgattttatctagacatatgctggtgctgagtccattgcttgccttgatgtcggatcaactgaggaagctccctgcatttatgcaagatggcctttttgcgagcacaccatcggtgcctttttggtgtgggctgtcaagaccatcgacagcttcctcccttgtccccaccggccatccgctccgcaaggtgatagacgttttccttgtatcgtga
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| Protein seq | MILSRHMLVLSPLLALMSDQLRKLPAFMQDGLFASTPSVPFWCGLSRPSTASSLVPTGHPLRKVIDVFLVS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0017490 | OsCMeo_05g0017490.03 | Chr05 | 21257151 | 21260292 | + | IsoSeq | ||
| CDS seq | cgccccccaatcccaaaccccgcagcagctccacctgcgccgccgtcggatcgacgggaaagaaccgcggaccgccgcgcttgcaccagcatccagatcagcgccgcctcgccgatctcctctgcgccgccgcccacgatttgctgccggcgctcacaaattgtcgtcgtcacgaaatcgcaa |
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| Protein seq | RPPIPNPAAAPPAPPSDRRERTADRRACTSIQISAASPISSAPPPTICCRRSQIVVVTKSQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr05 | 21258076 | 21260060 | + | OsCMeo_05g0017490.02 | OsCMeo_05g0017490.02,OsCMeo_05g0017490.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 6.946786 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0422900 | RBH | 2.096925 | 2.004407 | 3.849934 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0422900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0017670 | RBH | 0.799035 | 8.210680 | 6.387103 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0017670 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017510 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0017750 | RBH | 4.684123 | 0.000000 | 1.975017 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0026800 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0017230 | RBH | 0.000000 | 0.000000 | 0.324376 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0017570 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0017480 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0017620 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0017630 | RBH | 0.654880 | 0.646709 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0017680 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G017160 | RBH | 0.000000 | 2.078469 | 1.080011 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017460 | RBH | 1.808754 | 0.000000 | 2.869063 |
