Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0422900 | OGI:05055870 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:20737931-20741079 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCCGCCCCCCAATCCCAAACCCCGCAGCAGCTCCACCTGCGCCGCCGTCGGATCGACGGGAAAGAACCGCGGACCGCCGCGCTTGCACCAGCATCCAGATCAGCGCCGCCTCGCCGATCTCCTCTGCGCCGCCGCCCACGATTTGCTGCCGGCGCTCACAAATTGTCGTCGTCACGAAATCGCAACCCTAATCTCCCCACACCGCGCCGCCGCCCCTCGCCTCTCCACCGCACCGGTCTCCTCTGCGAGCGCCGTCGCTCCCTGCCTCTCCACCGCGCCGTCGTCCTCGCCGCCACCCTACGGCTCTCCACCACACTGCCATCCACTACGCCACCCTCCGCTCGTCGTGCCGCCCACATCGACGGGAGACTGCCCGTTAAGGGCGAGCCCGTCCTCCGTCGTCTTCCCGTCGCACGCGGAGGCAGCGATATTCTCCTTCGCCCACGATTTTCTTCGTCTTCTTCGTCTCTCTCCCCTTCTCCCACGGCTTGCTGCTGCTGCCCATATCAGCCGGACCCCATCTCCGGCGGCATCCCTCCCCAGGCGGCAGGCGACGGTGTGTGCTGATGCCCCCACGTCGGCGGTGTCCTGGCGGTCGTCTCCCGTGGCGGCGGCGTCCTGTCCTGTCAAGCGGCGTGCTGACAACAGAAACACTTATAGGATTTGGCGCTGAAAATTTTTTATGCCCTTTGAACAACAAAGCATGTTCATTATATTGACATCAACAAAAATTTCTGCTATCAGATGTGCTGCAAAAATCGAGATGTTGAGGTTATATAATTTAGTGCTGAAAAGTTAATGTTCTGTTTCAGGTGCCTGCAATGATTTTATCTAGACATATGCTGGTGCTGAGTCCATTGCTTGCCTTGATGTCGGATCAACTGAGGAAGCTCCCTGCATTTATGCAAGATGGCCTTTTTGCGAGCAGTTAGGTAAGGGCAGAATGTTCACAGTTGCTGCTTGTGCTATTAATTCTAATTTTGATCATTATGTTACACTAATGACTATGGGAGCAGCCGCATTCTGCATCGCACCGTTGGGTCGGATGCTTTCTGCACGCAGCATAGGGGCCCATATGCTTCCAGACAACTTGCTATCACCTAATCCCATTATTCTAGACAACTGCATTATAATTTGACTTTGTGTTGTTTGACAAATTTGTCAGATTTAGGCATGAGTTATGAACTCCTTGTATGGTGCTAAAAAATTTTGGGCATATATATGACGTGCAAAGAGTAGTTTAGACCCAATGAAACTTTGTAGAGTATTATTGTTTATGCCTGCAGTTGCTTCAAAGAGAACAAATTCAATCTATCTCTGTTGATTGTGTTTCTTTTCAAGCCACCTTATAATTTTTAGCACCTAATGAAGCCAACTCTTCTATTGGGTATTTCAAGGAAGATATGTGGATCTAGCTTTCAAAATAGAAATTGTTTCTGGTGGCTGTGCCTGTGTATCCTTAGTTGCTGCTTAGGATAAATAAGTCTGCATGGCTCATATCATCATCTGGAATATTTTTGTTTCATATCATCTGAATTTCAATTAATAAAGTCTGCATCCGGTTCTATTTCACTATTGGTGGTTTCTAACAGTCAATGATACTTGAAATCGAGTTTGTAGTCTGCATCTGGTTCTACATTCTTTGGTGGCCTCAAATTGTTATCACATATGCAGATTCACTATTGGTGGCCTCAAAGTGTTATCACATATGCAGATTCACTATTGAGTCTGTGATAATTAATTATTTGTTATGACATTTCTGTTATATCTTATATACTCCCTTCTTTGTAATTAACAGTAATGGAATTATTGTTAGTTCAATTTGAACCAACCAACATATCATATAATAAAAACAAATGGAGCATGAAAATAGCATTTTTCGAGGTTGTGACTAAATCCCTTGAACAAAGAACTTTAAAATAGAAAGGGAAACAAGAACTAATTCAGCTTATGTGACTGCTTGTTGCAGGCCGTTGATGTTTTGTGAGTAAGAGCTGGAGATAAAATTTGAACTTGTCAGTGCTGTTTTTTCCGTTTTGCTATTTGCCCAGCCAGTGCCCAATGCTGTTAATTGTACTGTTCAATGCTGATTTGTTAAAAACCATAAATTTAACTAACACAATTTTTTTGGAGACAATGATTTTTTTCTAAAGTAGGGGAATGACACCCTAGAGTGAGTTTGTTTTTCTATGTATGACATCACTCACCAGAGTCATCTTATATGATTATGAGTTAATCACGATATCTTTTTTATAGATCAGGAGAACATATTCTTATCATCTCTATGGTTAATCTGTATAGTTATAGATAATAGAGGGTTTGTCCATATTCCACATATAGGAAGTTATTTTTATTTTCATTTTACTTCTCAGTATTAGCTGAAATGTTAATTTATTTGGCTGCTTCAAAGTGAGTCTGACTGGTGTGTACAAATTTACATAAAACTGAATATGAAGGAGCACAAGTGGACTAGGACTGAGCATGCTAATTCAAACAGGCATCCAGTGTGAACTATGTGGGGCTGTGGGCAAATTCAGTAAATAACCTGCTCGTGGCAAATTGAGGACTAAAATTTTGATTTTGAGGTATACGATCTGATCTCTTCGCACCTTCAATTTTGTCTTCTTAGGTGTGTCATGTAAGTACCAGATTAATACGTGATAGATTGAGGTATAGTCATTGACAGTTTGCCACTGAAATGGAGTCTTTTGGGTGATGGCTTGCATTTCAAAATGCACTGGTATAATATGAAAATTGCACAGAACAAGCATTGACATTTTTCATGTACAAACAAGTTTAAAAATGTTATGCAGCTATGTTGTTTCCAAGTTTAGCATATGTATCTAAGAAAGCTATGTTATTACTTATTGTAAATTGTGGAGATAACATGTAATGTTTTGATTTATGCAGCACCATCGGTGCCTTTTTGGTGTGGGCTGTCAAGACCATCGACAGCTTCCTCCCTTGTCCCCACCGGCCATCCGCTCCGCAAGGTGATAGACGTTTTCCTTGTATCGTGACGTTCATGAATAATGTAGTCATGCCATATGAAGCAATTGTATACTTGTATGTGACCTTTTTGGCGGTTGATTGAAAAGTAAATGATTGGATCTGGGTGATTGAATAAAGTGCTTTTAGTATTCAGCTTG
More
|
||||||||||
| CDS seq | AAAGTTAATGTTCTGTTTCAGGTGCCTGCAATGATTTTATCTAGACATATGCTGGTGCTGAGTCCATTGCTTGCCTTGATGTCGGATCAACTGAGGAAGCTCCCTGCATTTATGCAAGATGGCCTTTTTGCGAGCAGTTAG |
||||||||||
| Protein seq | KVNVLFQVPAMILSRHMLVLSPLLALMSDQLRKLPAFMQDGLFASS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0422900 | Os05t0422900-01 | Chr05 | 20737931 | 20741079 | + | irgsp1_rep | ||
| CDS seq | AAAGTTAATGTTCTGTTTCAGGTGCCTGCAATGATTTTATCTAGACATATGCTGGTGCTGAGTCCATTGCTTGCCTTGATGTCGGATCAACTGAGGAAGCTCCCTGCATTTATGCAAGATGGCCTTTTTGCGAGCAGTTAG |
|||||||
| Protein seq | KVNVLFQVPAMILSRHMLVLSPLLALMSDQLRKLPAFMQDGLFASS |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0422900 | RBH | 2.096925 | 2.004407 | 3.849934 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0017670 | RBH | 0.799035 | 8.210680 | 6.387103 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0017670 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0017490 | RBH | 0.000000 | 0.0 | 6.946786 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017510 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0017750 | RBH | 4.684123 | 0.000000 | 1.975017 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0017230 | RBH | 0.000000 | 0.000000 | 0.324376 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0017570 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0017480 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0017620 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0017630 | RBH | 0.654880 | 0.646709 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0017680 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G017160 | RBH | 0.000000 | 2.078469 | 1.080011 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017460 | RBH | 1.808754 | 0.000000 | 2.869063 |
