Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0013790 | OGI:05045710 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:17676497-17678178 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggacatctcgcttgcttcacttgtcctcgtcctcgtcgccttcgtcctgccactcctctacctcctcctccaacttcccggcaagaagtccggtggcggcggcggcgatgggccgaggttgccgccgtcgccggccgggtgcctcccgctgctcggccacctccacctgctgggccccctgccgcacgtggcgctccggtccatggccgcggcgcacgggcccgtcctgcggctccggctcggccgcgtgccgacggtggtcgtgtcgtcggccgccgccgccgaggaggtgctgcgcgcgcgcgacgcggcgttctcgagccgccctaggagcgccatggcggagcgcatcctgtacggccgggacatcgcgttcgcgccctacggcgagtactggcgccaggcgcgacgcgtgtgcgtcgtccacctcctcagcgcgcagcgcgtctcctccttccgccgcgtccgggaggaggaggccgccgcgctggccgacgccgtccgcgccgccggacggggaggagggcgcgccttcgacctgagcgggctcatcgtcgcctacgccagcgccgtcgtctcccgcgccgcgttcggcgacgagagcgcgcgcggcatgtacggcggcgccgacggcgggcgcgcggtgaggaaggcgttctccgacttctcgcatctgttcgggacgaagcctgtgagtgactacctgccatggctcgggtgggtggacaccttgagggggcgggaacggaaggcgcggcgcacgttcgaggcgctcgacggcgtcctcgacaaggtgatcgatgaccaccgccgccgccgtgatagcggccggcggcaaacgggcgacgccgacgccggtcaccgggatttcgtggacgtgttactcgacgtgaacgagatggacaacgaagctggcattcatctcgacgcgattgaaatcaaagccatcatcatggtaacagccaacgtcttctccctttgacatggatgcagctcgctgctcacctcgttgatggatgcatacgccaggacatgttcgtggcggggtcggacgcgacgagcaagccgatggagtgggccatggcggagctcgtctcgcacccgcgccacatgcgcaggctgcaggacgagatccgggcggtggtcggcggcgggcgcgtcacggaggaccacgtcgacaagctgccgtacctgagggccgcgctgaaggaggcgctccggctgcacgcgccgctgccgctgctcgtggcgcgggagacggtggcggacaccgagatcatggggtaccacgtcgccgcgcgcacgcgggtggtgatcaacgggtgggccatcggccgcgacacggcggtgtggggggagaccgccgaggagttcatgccggagaggttcttggccggcggcaatggaggcggcgccgccgcggcggactacaaggtgcagggcttcgagatgctgccgttcggtggtgggaggagggggtgcccgggtgtcacgttcggcatggccaccgtggagatggccgtggcgagcttgctgtaccatttcgactgggaggcggcggcggccgacgggaagggtgggcgggaggggacgccattgctggacatgagcgagaccagtgggatctccatggggctcaagcatggcctgcctcttgtcgctaaaccacgctttccttaa
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| CDS seq | atggacatctcgcttgcttcacttgtcctcgtcctcgtcgccttcgtcctgccactcctctacctcctcctccaacttcccggcaagaagtccggtggcggcggcggcgatgggccgaggttgccgccgtcgccggccgggtgcctcccgctgctcggccacctccacctgctgggccccctgccgcacgtggcgctccggtccatggccgcggcgcacgggcccgtcctgcggctccggctcggccgcgtgccgacggtggtcgtgtcgtcggccgccgccgccgaggaggtgctgcgcgcgcgcgacgcggcgttctcgagccgccctaggagcgccatggcggagcgcatcctgtacggccgggacatcgcgttcgcgccctacggcgagtactggcgccaggcgcgacgcgtgtgcgtcgtccacctcctcagcgcgcagcgcgtctcctccttccgccgcgtccgggaggaggaggccgccgcgctggccgacgccgtccgcgccgccggacggggaggagggcgcgccttcgacctgagcgggctcatcgtcgcctacgccagcgccgtcgtctcccgcgccgcgttcggcgacgagagcgcgcgcggcatgtacggcggcgccgacggcgggcgcgcggtgaggaaggcgttctccgacttctcgcatctgttcgggacgaagcctgtgagtgactacctgccatggctcgggtgggtggacaccttgagggggcgggaacggaaggcgcggcgcacgttcgaggcgctcgacggcgtcctcgacaaggtgatcgatgaccaccgccgccgccgtgatagcggccggcggcaaacgggcgacgccgacgccggtcaccgggatttcgtggacgtgttactcgacgtgaacgagatggacaacgaagctggcattcatctcgacgcgattgaaatcaaagccatcatcatgctcgctgctcacctcgttgatggatgcatacgccaggacatgttcgtggcggggtcggacgcgacgagcaagccgatggagtgggccatggcggagctcgtctcgcacccgcgccacatgcgcaggctgcaggacgagatccgggcggtggtcggcggcgggcgcgtcacggaggaccacgtcgacaagctgccgtacctgagggccgcgctgaaggaggcgctccggctgcacgcgccgctgccgctgctcgtggcgcgggagacggtggcggacaccgagatcatggggtaccacgtcgccgcgcgcacgcgggtggtgatcaacgggtgggccatcggccgcgacacggcggtgtggggggagaccgccgaggagttcatgccggagaggttcttggccggcggcaatggaggcggcgccgccgcggcggactacaaggtgcagggcttcgagatgctgccgttcggtggtgggaggagggggtgcccgggtgtcacgttcggcatggccaccgtggagatggccgtggcgagcttgctgtaccatttcgactgggaggcggcggcggccgacgggaagggtgggcgggaggggacgccattgctggacatgagcgagaccagtgggatctccatggggctcaagcatggcctgcctcttgtcgctaaaccacgctttccttaa
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| Protein seq | MDISLASLVLVLVAFVLPLLYLLLQLPGKKSGGGGGDGPRLPPSPAGCLPLLGHLHLLGPLPHVALRSMAAAHGPVLRLRLGRVPTVVVSSAAAAEEVLRARDAAFSSRPRSAMAERILYGRDIAFAPYGEYWRQARRVCVVHLLSAQRVSSFRRVREEEAAALADAVRAAGRGGGRAFDLSGLIVAYASAVVSRAAFGDESARGMYGGADGGRAVRKAFSDFSHLFGTKPVSDYLPWLGWVDTLRGRERKARRTFEALDGVLDKVIDDHRRRRDSGRRQTGDADAGHRDFVDVLLDVNEMDNEAGIHLDAIEIKAIIMLAAHLVDGCIRQDMFVAGSDATSKPMEWAMAELVSHPRHMRRLQDEIRAVVGGGRVTEDHVDKLPYLRAALKEALRLHAPLPLLVARETVADTEIMGYHVAARTRVVINGWAIGRDTAVWGETAEEFMPERFLAGGNGGGAAAADYKVQGFEMLPFGGGRRGCPGVTFGMATVEMAVASLLYHFDWEAAAADGKGGREGTPLLDMSETSGISMGLKHGLPLVAKPRFP |
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| Function | Cytochrome P450 71A6 (Fragment) [UniProtKB/Swiss-Prot:O04164] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0013790 | OsCMeo_05g0013790.01 | Chr05 | 17676497 | 17678178 | + | NAM | ||
| CDS seq | atggacatctcgcttgcttcacttgtcctcgtcctcgtcgccttcgtcctgccactcctctacctcctcctccaacttcccggcaagaagtccggtggcggcggcggcgatgggccgaggttgccgccgtcgccggccgggtgcctcccgctgctcggccacctccacctgctgggccccctgccgcacgtggcgctccggtccatggccgcggcgcacgggcccgtcctgcggctccggctcggccgcgtgccgacggtggtcgtgtcgtcggccgccgccgccgaggaggtgctgcgcgcgcgcgacgcggcgttctcgagccgccctaggagcgccatggcggagcgcatcctgtacggccgggacatcgcgttcgcgccctacggcgagtactggcgccaggcgcgacgcgtgtgcgtcgtccacctcctcagcgcgcagcgcgtctcctccttccgccgcgtccgggaggaggaggccgccgcgctggccgacgccgtccgcgccgccggacggggaggagggcgcgccttcgacctgagcgggctcatcgtcgcctacgccagcgccgtcgtctcccgcgccgcgttcggcgacgagagcgcgcgcggcatgtacggcggcgccgacggcgggcgcgcggtgaggaaggcgttctccgacttctcgcatctgttcgggacgaagcctgtgagtgactacctgccatggctcgggtgggtggacaccttgagggggcgggaacggaaggcgcggcgcacgttcgaggcgctcgacggcgtcctcgacaaggtgatcgatgaccaccgccgccgccgtgatagcggccggcggcaaacgggcgacgccgacgccggtcaccgggatttcgtggacgtgttactcgacgtgaacgagatggacaacgaagctggcattcatctcgacgcgattgaaatcaaagccatcatcatgctcgctgctcacctcgttgatggatgcatacgccaggacatgttcgtggcggggtcggacgcgacgagcaagccgatggagtgggccatggcggagctcgtctcgcacccgcgccacatgcgcaggctgcaggacgagatccgggcggtggtcggcggcgggcgcgtcacggaggaccacgtcgacaagctgccgtacctgagggccgcgctgaaggaggcgctccggctgcacgcgccgctgccgctgctcgtggcgcgggagacggtggcggacaccgagatcatggggtaccacgtcgccgcgcgcacgcgggtggtgatcaacgggtgggccatcggccgcgacacggcggtgtggggggagaccgccgaggagttcatgccggagaggttcttggccggcggcaatggaggcggcgccgccgcggcggactacaaggtgcagggcttcgagatgctgccgttcggtggtgggaggagggggtgcccgggtgtcacgttcggcatggccaccgtggagatggccgtggcgagcttgctgtaccatttcgactgggaggcggcggcggccgacgggaagggtgggcgggaggggacgccattgctggacatgagcgagaccagtgggatctccatggggctcaagcatggcctgcctcttgtcgctaaaccacgctttccttaa
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| Protein seq | MDISLASLVLVLVAFVLPLLYLLLQLPGKKSGGGGGDGPRLPPSPAGCLPLLGHLHLLGPLPHVALRSMAAAHGPVLRLRLGRVPTVVVSSAAAAEEVLRARDAAFSSRPRSAMAERILYGRDIAFAPYGEYWRQARRVCVVHLLSAQRVSSFRRVREEEAAALADAVRAAGRGGGRAFDLSGLIVAYASAVVSRAAFGDESARGMYGGADGGRAVRKAFSDFSHLFGTKPVSDYLPWLGWVDTLRGRERKARRTFEALDGVLDKVIDDHRRRRDSGRRQTGDADAGHRDFVDVLLDVNEMDNEAGIHLDAIEIKAIIMLAAHLVDGCIRQDMFVAGSDATSKPMEWAMAELVSHPRHMRRLQDEIRAVVGGGRVTEDHVDKLPYLRAALKEALRLHAPLPLLVARETVADTEIMGYHVAARTRVVINGWAIGRDTAVWGETAEEFMPERFLAGGNGGGAAAADYKVQGFEMLPFGGGRRGCPGVTFGMATVEMAVASLLYHFDWEAAAADGKGGREGTPLLDMSETSGISMGLKHGLPLVAKPRFP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.765122 | 6.251610 | 1.302399 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0361000 | RBH | 0.815747 | 0.283551 | 3.338498 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g29750 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0361000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0013920 | RBH | 0.000000 | 3.044256 | 1.854757 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0013950 | RBH | 0.000000 | 0.000000 | 0.621612 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0009160 | SBH | 0.699528 | 0.0 | 1.015152 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0013810 | RBH | 0.097360 | 0.257732 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0013940 | RBH | 0.0 | 0.0 | 2.170470 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0259900 | RBH | 3.1306415 | 1.6738345 | 2.8172525 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0013500 | RBH | 0.0 | 0.000000 | 0.395736 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0270000 | RBH | 4.5379675 | 1.507102 | 1.1457465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0013690 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0013700 | RBH | 0.111180 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0013730 | RBH | 0.0 | 3.840777 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0013790 | RBH | 0.000000 | 0.0 | 0.145128 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0013790 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G013490 | RBH | 0.0 | 0.0 | 0.644665 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0013720 | RBH | 0.000000 | 0.0 | 0.859970 |
