Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0008210 | OGI:05021780 | 6/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:8088269-8089184 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctaacctagctacatcattgaaagatatatctgttggccaggaaaactgcaaggtttttggacgtctaataagattatgggatgctataaacatgaaatcaaaatctgcagatcccctcatcagcattgacggcatcctattggatgaacatgtatgtcattctcttatgtgttccaccaaatattaatcctatattctacttctttgctatacttaatactagccatatcaattgttgcacaataatttttcagggctcaatagcacagatcactgtgccaaaaaggtttgcaaagtaattccgccccttgctaaataaaggatctgtctacctaattagtaatattgttgccattgatgcaaaaagaaagacctatatctaccagtgccagaactacattctccagtttaaacatgacacaagaattcaacccctggaatctagaggattaaccataccaaagttcttttttgacttctacccatttgatgaagtcctagggaaaaatatcagttccaaacctctcataggtaatgctatctttgattccacattgaatcatacttattacacttcacattcttttggcttattcctccagattttttttgaatgaatattcctccagatttgattggagtaatcagtcatattggtccgtatgattttgcgagcccaacatcagacaaaaaactcaggagaattaaaattcaaaacctagagtacgtaccttttccaaacctgatcgttaaaatcaatgctctcattaattacttttgtgtaatctcagcaattgtttatatgcaacattttttcagggaacagactcaagatgtcctactctagggacaatatggagaatcattcaacgaagatgcaacactccataaatcaaaggatggaattgtag
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| CDS seq | atggctaacctagctacatcattgaaagatatatctgttggccaggaaaactgcaaggtttttggacgtctaataagattatgggatgctataaacatgaaatcaaaatctgcagatcccctcatcagcattgacggcatcctattggatgaacatggctcaatagcacagatcactgtgccaaaaagtaatattgttgccattgatgcaaaaagaaagacctatatctaccagtgccagaactacattctccagtttaaacatgacacaagaattcaacccctggaatctagaggattaaccataccaaagttcttttttgacttctacccatttgatgaagtcctagggaaaaatatcagttccaaacctctcatagatttgattggagtaatcagtcatattggtccgtatgattttgcgagcccaacatcagacaaaaaactcaggagaattaaaattcaaaacctagaactcaagatgtcctactctagggacaatatggagaatcattcaacgaagatgcaacactccataaatcaaaggatggaattgtag
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| Protein seq | MANLATSLKDISVGQENCKVFGRLIRLWDAINMKSKSADPLISIDGILLDEHGSIAQITVPKSNIVAIDAKRKTYIYQCQNYILQFKHDTRIQPLESRGLTIPKFFFDFYPFDEVLGKNISSKPLIDLIGVISHIGPYDFASPTSDKKLRRIKIQNLELKMSYSRDNMENHSTKMQHSINQRMEL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0008210 | OsCMeo_05g0008210.01 | Chr05 | 8088269 | 8089184 | + | NAM | ||
| CDS seq | atggctaacctagctacatcattgaaagatatatctgttggccaggaaaactgcaaggtttttggacgtctaataagattatgggatgctataaacatgaaatcaaaatctgcagatcccctcatcagcattgacggcatcctattggatgaacatggctcaatagcacagatcactgtgccaaaaagtaatattgttgccattgatgcaaaaagaaagacctatatctaccagtgccagaactacattctccagtttaaacatgacacaagaattcaacccctggaatctagaggattaaccataccaaagttcttttttgacttctacccatttgatgaagtcctagggaaaaatatcagttccaaacctctcatagatttgattggagtaatcagtcatattggtccgtatgattttgcgagcccaacatcagacaaaaaactcaggagaattaaaattcaaaacctagaactcaagatgtcctactctagggacaatatggagaatcattcaacgaagatgcaacactccataaatcaaaggatggaattgtag
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| Protein seq | MANLATSLKDISVGQENCKVFGRLIRLWDAINMKSKSADPLISIDGILLDEHGSIAQITVPKSNIVAIDAKRKTYIYQCQNYILQFKHDTRIQPLESRGLTIPKFFFDFYPFDEVLGKNISSKPLIDLIGVISHIGPYDFASPTSDKKLRRIKIQNLELKMSYSRDNMENHSTKMQHSINQRMEL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g14380 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0002450 | SBH | 0.253824 | 11.154471 | 2.787909 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0002480 | RBH | 1.158739 | 8.961026 | 7.050521 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0002500 | SBH | 2.120390 | 11.687175 | 13.619857 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0122200 | RBH | 0.0053295 | 0.004005 | 0.026057 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0002440 | SBH | 0.071328 | 0.585107 | 0.948851 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0121000 | RBH | 0 | 0.005579 | 0.0052415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0002440 | SBH | 0.114200 | 0.113879 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0002360 | SBH | 0.465925 | 14.443913 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0002470 | SBH | 1.555149 | 34.331482 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0002480 | SBH | 1.069869 | 0.766159 | 1.034032 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0008320 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G002340 | SBH | 0.269942 | 2.386585 | 1.214439 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0002530 | SBH | 1.619044 | 8.796651 | 4.828197 |
