Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0004600 | OGI:05010400 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:3817765-3820274 | ||||||||
| Gene Symbol | SDRLK-34, SDRLK-35, SDRLK-36 | ||||||||||
| DNA seq | TTATGAATCATCATCACAGTGAGCCACAACAGTGCATTCTGCTAAAGCTGCAAGTAGCCGTGGCATTGGAGGCATATCAAGCTCCTGTAAACCCTCAAGAACCCGGACCACTTCATTCATTGTTGGCCGATCAATCTCATTCTCTTGGATGCACCAACATGCAACTTTGCAAACTCTTTCAACCTCTACTAGACTGAAGTCACCATTTAACTGCGGGTCTACCAAACTCTGGACATCTCCCTCATGAAGCTTGCTAATGGCTTGCACAGGGAAAAAGGCAACTTGATCACTATTGTCATCAGTATGAACTTTATATGAATTCCTTCTTCCTGATAAGATTTCCAAaaagtaccataccgaagctataaacatcaacttttggtgtaatagcaactccactaatccactctggagcaagatatcctactgtgcctctgaatgtagtcaaaactcggctaaagttccttcctacaaatgctgccatcccaaagtctgcaattttaggggcaaacgatgcatcgagaagtatgttttctggcttaatatcacaatgtatgatgcattcgttgcagctctgatgcaagtaggacaatcctctagcaactcctatggctaggttatacctggtggtccAattcaggacagtagccttgctctgaaacagatgggcatcaagagaaccatttaccatgtgttcatacacaagtagtctctcatcaccttcgcaacagaaaccaatcaatttgacaaggttgatatgttggatcaatccaattgagctcacctcagccctgaattgcttctctccctgacgagcaccgtcaagctttttcactgctataatagtcgagtcacttagcactccctGAATACAGAACCAAAACCACCTCCTCCCAGCTTTTCAGAGAAATTTTTAGTAGCATGACATAAATCATTGTATCTAAAGGCCACAATTCCACCACTACATTGACTGTCGTGTAATTGTGCGCCACAGAACCTTAGTTTCTTCCTTAATACCAGTAAGATCAGCATGAGCATTACCAACAAACTGACAATGCTTGCAGCAACAACTGCAACGATTGGCTTTATTTTGTTTTTtctcgaacttggcacatctttggcggcaagccgaaggtagagaacatcttcagaactattatcaatgccatcattcctatttacactaagcaaatctccatgccaaatagagcatttactattttcgtaggaataggcattgcaggagcagtaactgagacaagcctgtgcacatttgctctgagtggtagcattgtctacaatttgggggttgtagggcaatctaacacgagctatggtgtggaacacgtctgtggagcttgtcgtgttactgcaatctaacggagtgtttctagagcaacctgctgttctattatcaagctcccaatctcgaggcgacttttgagagaagctctccatacagtcacagaatggatgtgcaatgccattgcagattgtgaaaggtccacaagtagcatacgccgtgcagggatcagctggttgggcataaacctgcttccaggattgtgtatcttgtgaccaaacatttatctcgatctgcccagagatgtctagcaagacatatgcataatatgattcatccaatAaaatgtattcatagtactcttcttcattgttgttgacatatgtcatgttaatccgacctttagtctctggatttatgtttatcagctgattaagtaatgatataagtgcacttgatgacttttcagatgaccaagaccaatacatatttggggggttactacggctaaggtcaatccctgtgttgtcaagctcaacatagtacaagccaagacctggatcaatcaggttcttctttgatgtgaaccgacaagtaaagccagtgaccttattccagccaaacttggctccaggaagcaaaacatctgacggatagtcaaagctctgccacaacacattgggtgagcttcctatcacaaggtttccatcgtttgagagaacgacactggtactgctgttcatggtggtggctgatgtcctattgacagtactggaccagattatggatgcattgcttgagatgacaaggttgccatcttttgatagtttcagctgcgtttgattgagctggagttcagtgactggactatccctattagcaacccagacagtagtaaaaactgagatgttactgaaccatattccaacataccaattgggagaggtgatgttgccagacttaacgacgacgcttggctggaagaagccgagcgtgaacctgccgtttcttgacacaagcttgtcaccaacggcgagcacttcgcctgccgcgagagtatcattcgtggcggcagagcatggcggagtaacgtgcagggagaagagaagaaagccaagcgatatgtaaagcagggtggtcatggcgaagaaaatgggatggagaaagcagagaggaagtatacatatgtgttgtgtgctgctcagct
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| CDS seq | atgaacagcagtaccagtgtcgttctctcaaacgatggaaaccttgtgataggaagctcacccaatgtgttgtggcagagctttgactatccgtcagatgttttgcttcctggagccaagtttggctggaataaggtcactggctttacttgtcggttcacatcaaagaagaacctgattgatccaggtcttggcttgtactatgttgagcttgacaacacagggattgaccttagccgtagtaaccccccaaatatgtattggtcttggtcatctgaaaagtcatcaagtgcacttatatcattacttaatcagctgataaacataaatccagagactaaaggtcggattaacatgacatatgtcaacaacaatgaagaagagtactatgaatacatttTattggatgaatcatattatgcatatgtcttgctagacatctctgggcagatcgagataaatgtttggtcacaagatacacaatcctggaagcaggtttatgcccaaccagctgatccctgcacggcgtatgctacttgtggacctttcacaatctgcaatggcattgcacatccattctgtgactgtatggagagcttctctcaaaagtcgcctcgagattgggagcttgataatagaacagcaggttgctctagaaacactccgttagattgcagtaacacgacaagctccacagacgtgttccacaccatagctcgtgttagattgccctacaacccccaaattgtagacaatgctaccactcagagcaaatgtgcacaggcttgtctcagttactgctcctgcaatgcctattcctacgaaaatagtaaatgctctatttggcatggagatttgcttagtgtaaataggaatgatggcattgataatagttctgaagatgttctctaccttcggcttgccgccaaagatgtgccaagttcgagaAAAAACAAAATAAAGCCAATCGTTGCAGTTGTTGCTGCAAGCATTGTCAGTTTGTTGGTAATGCTCATGCTGATCTTACTGggagtgctaagtgactcgactattatagcagtgaaaaagcttgacggtgctcgtcagggagagaagcaattcagggctgagagcaaggctactgtcctgaatTggaccaccaggtataacctagccataggagttgctagaggattgtcctacttgcatcagagctgcaacgaatgcatcatacattgtgatattaagccagaaaacatacttctcgatgcatcgtttgcccctaaaattgcagactttgggatggcagcatttgtaggaaggaactttagccgagttttgactacattcagaggcacagtaggatatcttgctccagagtggattagtggagttgctattacaccaaaagttgatgtttatagcttcgCCATTAGCAAGCTTCATGAGGGAGATGTCCAGAGTTTGGTAGACCCGCAGTTAAATGGTGACTTCAGTCTAGTAGAGGTTGAAAGAGTTTGCAAAGTTGCATGTTGGTGCATCCAAGAGAATGAGATTGATCGGCCAACAATGAATGAAGTGGTCCGGGTTCTTGAGGGTTTACAGGAGCTTGATATGCCTCCAATGCCACGGCTACTTGCAGCTTTAGCAGAATGCACTGTTGTGGCTCACTGTGATGATGATTCATAA
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| Protein seq | MNSSTSVVLSNDGNLVIGSSPNVLWQSFDYPSDVLLPGAKFGWNKVTGFTCRFTSKKNLIDPGLGLYYVELDNTGIDLSRSNPPNMYWSWSSEKSSSALISLLNQLININPETKGRINMTYVNNNEEEYYEYILLDESYYAYVLLDISGQIEINVWSQDTQSWKQVYAQPADPCTAYATCGPFTICNGIAHPFCDCMESFSQKSPRDWELDNRTAGCSRNTPLDCSNTTSSTDVFHTIARVRLPYNPQIVDNATTQSKCAQACLSYCSCNAYSYENSKCSIWHGDLLSVNRNDGIDNSSEDVLYLRLAAKDVPSSRKNKIKPIVAVVAASIVSLLVMLMLILLGVLSDSTIIAVKKLDGARQGEKQFRAESKATVLNWTTRYNLAIGVARGLSYLHQSCNECIIHCDIKPENILLDASFAPKIADFGMAAFVGRNFSRVLTTFRGTVGYLAPEWISGVAITPKVDVYSFAISKLHEGDVQSLVDPQLNGDFSLVEVERVCKVACWCIQENEIDRPTMNEVVRVLEGLQELDMPPMPRLLAALAECTVVAHCDDDS |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [UniProtKB/Swiss-Prot:Q39203] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0004600 | OsCMeo_05g0004600.01 | Chr05 | 3817765 | 3820274 | - | NAM | ||
| CDS seq | atgaacagcagtaccagtgtcgttctctcaaacgatggaaaccttgtgataggaagctcacccaatgtgttgtggcagagctttgactatccgtcagatgttttgcttcctggagccaagtttggctggaataaggtcactggctttacttgtcggttcacatcaaagaagaacctgattgatccaggtcttggcttgtactatgttgagcttgacaacacagggattgaccttagccgtagtaaccccccaaatatgtattggtcttggtcatctgaaaagtcatcaagtgcacttatatcattacttaatcagctgataaacataaatccagagactaaaggtcggattaacatgacatatgtcaacaacaatgaagaagagtactatgaatacatttTattggatgaatcatattatgcatatgtcttgctagacatctctgggcagatcgagataaatgtttggtcacaagatacacaatcctggaagcaggtttatgcccaaccagctgatccctgcacggcgtatgctacttgtggacctttcacaatctgcaatggcattgcacatccattctgtgactgtatggagagcttctctcaaaagtcgcctcgagattgggagcttgataatagaacagcaggttgctctagaaacactccgttagattgcagtaacacgacaagctccacagacgtgttccacaccatagctcgtgttagattgccctacaacccccaaattgtagacaatgctaccactcagagcaaatgtgcacaggcttgtctcagttactgctcctgcaatgcctattcctacgaaaatagtaaatgctctatttggcatggagatttgcttagtgtaaataggaatgatggcattgataatagttctgaagatgttctctaccttcggcttgccgccaaagatgtgccaagttcgagaAAAAACAAAATAAAGCCAATCGTTGCAGTTGTTGCTGCAAGCATTGTCAGTTTGTTGGTAATGCTCATGCTGATCTTACTGggagtgctaagtgactcgactattatagcagtgaaaaagcttgacggtgctcgtcagggagagaagcaattcagggctgagagcaaggctactgtcctgaatTggaccaccaggtataacctagccataggagttgctagaggattgtcctacttgcatcagagctgcaacgaatgcatcatacattgtgatattaagccagaaaacatacttctcgatgcatcgtttgcccctaaaattgcagactttgggatggcagcatttgtaggaaggaactttagccgagttttgactacattcagaggcacagtaggatatcttgctccagagtggattagtggagttgctattacaccaaaagttgatgtttatagcttcgCCATTAGCAAGCTTCATGAGGGAGATGTCCAGAGTTTGGTAGACCCGCAGTTAAATGGTGACTTCAGTCTAGTAGAGGTTGAAAGAGTTTGCAAAGTTGCATGTTGGTGCATCCAAGAGAATGAGATTGATCGGCCAACAATGAATGAAGTGGTCCGGGTTCTTGAGGGTTTACAGGAGCTTGATATGCCTCCAATGCCACGGCTACTTGCAGCTTTAGCAGAATGCACTGTTGTGGCTCACTGTGATGATGATTCATAA
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| Protein seq | MNSSTSVVLSNDGNLVIGSSPNVLWQSFDYPSDVLLPGAKFGWNKVTGFTCRFTSKKNLIDPGLGLYYVELDNTGIDLSRSNPPNMYWSWSSEKSSSALISLLNQLININPETKGRINMTYVNNNEEEYYEYILLDESYYAYVLLDISGQIEINVWSQDTQSWKQVYAQPADPCTAYATCGPFTICNGIAHPFCDCMESFSQKSPRDWELDNRTAGCSRNTPLDCSNTTSSTDVFHTIARVRLPYNPQIVDNATTQSKCAQACLSYCSCNAYSYENSKCSIWHGDLLSVNRNDGIDNSSEDVLYLRLAAKDVPSSRKNKIKPIVAVVAASIVSLLVMLMLILLGVLSDSTIIAVKKLDGARQGEKQFRAESKATVLNWTTRYNLAIGVARGLSYLHQSCNECIIHCDIKPENILLDASFAPKIADFGMAAFVGRNFSRVLTTFRGTVGYLAPEWISGVAITPKVDVYSFAISKLHEGDVQSLVDPQLNGDFSLVEVERVCKVACWCIQENEIDRPTMNEVVRVLEGLQELDMPPMPRLLAALAECTVVAHCDDDS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.358280 | 3.427163 | 3.791794 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0165900 | RBH | 0.000000 | 0.000000 | 1.266664 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g07300 | RBH | 0.726653 | 0.860269 | 0.255870 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0165900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0004670 | RBH | 0.328666 | 2.882594 | 3.792384 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0004720 | RBH | 0.272087 | 0.984221 | 1.162947 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0005140 | SBH | 0.259160 | 10.244317 | 14.904477 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0004690 | RBH | 0.104604 | 0.043189 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0004770 | RBH | 0.889360 | 2.532526 | 5.295527 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0055700 | RBH | 2.6570935 | 7.0126555 | 7.5057385 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0004540 | RBH | 0.203307 | 0.0 | 0.564514 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0056300 | RBH | 0.0437045 | 0.008433 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0004680 | RBH | 0.041213 | 0.096640 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0004600 | RBH | 0.355558 | 2.768361 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0004690 | RBH | 2.585844 | 14.050182 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0004720 | RBH | 0.671889 | 0.626201 | 0.510755 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0004760 | RBH | 0.227514 | 2.127516 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G004650 | RBH | 0.093306 | 0.506809 | 0.607557 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0004870 | RBH | 0.395104 | 0.000000 | 0.625541 |
