Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
LOC_Os05g07300		OGI:05010400 \| 16/16			Nipponbare \| IRGSP 1.0 \| MSU			Chr05:3878198-3881797		Homologues MicroCollinearity RGI-JBrowse RGAP Ricevarmap2
Gene Symbol		SDRLK-34
DNA seq		GTCTCTGAAGCAAGCATGCAGTAAATTTTTTATTTTTTTAGAACTGACATCTCTGAAGCAAGCATGCAGCAAGTAGTGGCATAGATTAACTTGTTGAGTTTAACAATATATGCCAACTAGACCATCAACAAAACATAGGCATCGGGCATGTATCTCTATTTCTGCCAAATCTTTGCTGTAATGCCTGCTTACAACAATTGGTTATTGAAAAAATGCGTTACAATTTAGCACTACCCAGCTTACATTCCTTTTCTTCCACTCATGTTAGAACCTCAAAATTTTCTAAGACAAATATTATTAACATCAACTAGGAAGTACTTATGAATCATCATCACAGTGAGCCACAACAGTGCATTCTGCTAAAGCTGCAAGTAGCCGTGGCATTGGAGGCATATCAAGCTCCTGTAAACCCTCAAGAACCCGGACCACTTCATTCATTGTTGGCCGATCAATCTCATTCTCTTGGATGCACCAACATGCAACTTTGCAAACTCTTTCAACCTCTACTAGACTGAAGTCACCATTTAACTGCGGGTCTACCAAACTCTGGACATCTCCCTCATGAAGCTTGCTAATGGCTTGCACAGGGAAAAAGGCAACTTGATCACTATTGTCATCAGTATGAACTTTATATGAATTCCTTCTTCCTGATAAGATTTCCAAAAGTACCATACCGAAGCTATAAACATCAACTTTTGGTGTAATAGCAACTCCACTAATCCACTCTGGAGCAAGATATCCTACTGTGCCTCTGAATGTAGTCAAAACTCGGCTAAAGTTCCTTCCTACAAATGCTGCCATCCCAAAGTCTGCAATTTTAGGGGCAAACGATGCATCGAGAAGTATGTTTTCTGGCTTAATATCACAATGTATGATGCATTCGTTGCAGCTCTGATGCAAGTAGGACAATCCTCTAGCAACTCCTATGGCTAGGTTATACCTGGTGGTCCAATTCAGGACAGTAGCCTTGCTCTGAAACAGATGGGCATCAAGAGAACCATTTACCATGTGTTCATACACAAGTAGTCTCTCATCACCTTCGCAACAGAAACCAATCAATTTGACAAGGTTGATATGTTGGATCAATCCAATTGAGCTCACCTCAGCCCTGAATTGCTTCTCTCCCTGACGAGCACCGTCAAGCTTTTTCACTGCTATAATAGTCGAGTCACTTAGCACTCCCTTGAATACAGAACCAAAACCACCTCCTCCCAGCTTTTCAGAGAAATTTTTAGTAGCATGACATAAATCATTGTATCTAAAGGCCACAATTCCACCACTACATTGACTGTCGTGTAATTGTGCGCCACAGAACCTTAGTTTCTTCCTTAATACCAGTAAGATCAGCATGAGCATTACCAACAAACTGACAATGCTTGCAGCAACAACTGCAACGATTGGCTTTATTTTGTTTTTTCTCGAACTTGGCACATCTTTGGCGGCAAGCCGAAGGTAGAGAACATCTTCAGAACTATTATCAATGCCATCATTCCTATTTACACTAAGCAAATCTCCATGCCAAATAGAGCATTTACTATTTTCGTAGGAATAGGCATTGCAGGAGCAGTAACTGAGACAAGCCTGTGCACATTTGCTCTGAGTGGTAGCATTGTCTACAATTTGGGGGTTGTAGGGCAATCTAACACGAGCTATGGTGTGGAACACGTCTGTGGAGCTTGTCGTGTTACTGCAATCTAACGGAGTGTTTCTAGAGCAACCTGCTGTTCTATTATCAAGCTCCCAATCTCGAGGCGACTTTTGAGAGAAGCTCTCCATACAGTCACAGAATGGATGTGCAATGCCATTGCAGATTGTGAAAGGTCCACAAGTAGCATACGCCGTGCAGGGATCAGCTGGTTGGGCATAAACCTGCTTCCAGGATTGTGTATCTTGTGACCAAACATTTATCTCGATCTGCCCAGAGATGTCTAGCAAGACATATGCATAATATGATTCATCCAATAAAATGTATTCATAGTACTCTTCTTCATTGTTGTTGACATATGTCATGTTAATCCGACCTTTAGTCTCTGGATTTATGTTTATCAGCTGATTAAGTAATGATATAAGTGCACTTGATGACTTTTCAGATGACCAAGACCAATACATATTTGGGGGGTTACTACGGCTAAGGTCAATCCCTGTGTTGTCAAGCTCAACATAGTACAAGCCAAGACCTGGATCAATCAGGTTCTTCTTTGATGTGAACCGACGAGTAAAGCCAGTGACCTTATTCCAGCCAAACTTGGCTCCAGGAAGCAAAACATCTGACGGATAGTCAAAGCTCTGCCACAACACATTGGGTGAGCTTCCTATCACAAGGTTTCCATCGTTTGAGAGAACGACACTGGTACTGCTGTTCATGGTGGTGGCTGATGTCCTATTGACAGTACTGGACCAGATTATGGATGCATTGCTTGAGATGACAAGGTTGCCATCTTTTGATAGTTTCAGCTGCGTTTGATTGAGCTGGAGTTCAGTGACTGGACTATCCCTATTAGCAACCCAGACAGTAGTAAAAACTGAGATGTTACTGAACCATATTCCAACATACCAATTGGGAGAGGTGATGTTGCCAGACTTAACGACGACGCTTGGCTGGAAGAAGCCGAGCGTGAACCTGCCGTTTCTTGACACAAGCTTGTCACCAACGGCGAGCACTTCGCCTGCCGCGAGAGTATCATTCGTGGCGGCAGAGCATGGCGGAGTAACGTGCAGGGAGAAGAGAAGAAAGCCAAGCGATATGTAAAGCAGGGTGGTCATGGCGAAGAAAATGGGATGGAGAAAGCAGAGAGGAAGTATACATATGTGTTGTGTGCTGCTCAGCTACTCGGAGAAGGAAGAGCAGGGCATATATACAATAAAACAAGCAGGTTGGTCAGAACACACGCATGGGCATAGATGCAGGTTGGATTGACAAGGAAGACCATGGCAACGAGCCAACGACACAGGCTAGTTGCAGGTCAAGTTCAGACTGATGATTCAGACAGGAGTACCAACTTGGCAACTTGAGCTGGGCTGTGGTACAAAACCATTGGGGCAAGCAGCTAGCTAGTCTCTTTCAAATTTAGTTAGCTAGTACATGCTCCAATGAGAAGCTTTTTCATTGGTCAAGCCAGCCATGGCCAGTCAATCACCTGGGGCTTTCACCAATTTGCTGCTGTTCGTAGATGCATGAAACTGCCTACCAGCCCATTGATTCAGAGTTTCAGACGGAATCAACACGTGCAAGTGTGATGATCCATCTTTGGTGCTCTCTCCGAATAACGCGGTTTTTTGTTTGGTGACCGGAGATTGGAGTGTCTCCTTGCATTATTGCTTGACAGATTTGAATTTCTGAAGGAGAAAAATACAATGGCTCGTGGCAGCAAATATATATGCATGGTTGTCCATGAAAATAACTTTTAGCGGTTTGTCTCTGTTAGGCATTTCAACAAACGTCATCTGATGTGTTTGTTTCTGCAATATTGATCATCATATTGTACAAACTTCAGGCCTATTTGACATGATATGTGACCATTCTCGCAATCCATGTACAGATATACTGGTTTAGTACCAAGCTGAATGACATGGATAAAATTAGTCAAAGTTGATCAGGTA More
CDS seq		ATGACCACCCTGCTTTACATATCGCTTGGCTTTCTTCTCTTCTCCCTGCACGTTACTCCGCCATGCTCTGCCGCCACGAATGATACTCTCGCGGCAGGCGAAGTGCTCGCCGTTGGTGACAAGCTTGTGTCAAGAAACGGCAGGTTCACGCTCGGCTTCTTCCAGCCAAGCGTCGTCGTTAAGTCTGGCAACATCACCTCTCCCAATTGGTATGTTGGAATATGGTTCAGTAACATCTCAGTTTTTACTACTGTCTGGGTTGCTAATAGGGATAGTCCAGTCACTGAACTCCAGCTCAATCAAACGCAGCTGAAACTATCAAAAGATGGCAACCTTGTCATCTCAAGCAATGCATCCATAATCTGGTCCAGTACTGTCAATAGGACATCAGCCACCACCATGAACAGCAGTACCAGTGTCGTTCTCTCAAACGATGGAAACCTTGTGATAGGAAGCTCACCCAATGTGTTGTGGCAGAGCTTTGACTATCCGTCAGATGTTTTGCTTCCTGGAGCCAAGTTTGGCTGGAATAAGGTCACTGGCTTTACTCGTCGGTTCACATCAAAGAAGAACCTGATTGATCCAGGTCTTGGCTTGTACTATGTTGAGCTTGACAACACAGGGATTGACCTTAGCCGTAGTAACCCCCCAAATATGTATTGGTCTTGGTCATCTGAAAAGTCATCAAGTGCACTTATATCATTACTTAATCAGCTGATAAACATAAATCCAGAGACTAAAGGTCGGATTAACATGACATATGTCAACAACAATGAAGAAGAGTACTATGAATACATTTTATTGGATGAATCATATTATGCATATGTCTTGCTAGACATCTCTGGGCAGATCGAGATAAATGTTTGGTCACAAGATACACAATCCTGGAAGCAGGTTTATGCCCAACCAGCTGATCCCTGCACGGCGTATGCTACTTGTGGACCTTTCACAATCTGCAATGGCATTGCACATCCATTCTGTGACTGTATGGAGAGCTTCTCTCAAAAGTCGCCTCGAGATTGGGAGCTTGATAATAGAACAGCAGGTTGCTCTAGAAACACTCCGTTAGATTGCAGTAACACGACAAGCTCCACAGACGTGTTCCACACCATAGCTCGTGTTAGATTGCCCTACAACCCCCAAATTGTAGACAATGCTACCACTCAGAGCAAATGTGCACAGGCTTGTCTCAGTTACTGCTCCTGCAATGCCTATTCCTACGAAAATAGTAAATGCTCTATTTGGCATGGAGATTTGCTTAGTGTAAATAGGAATGATGGCATTGATAATAGTTCTGAAGATGTTCTCTACCTTCGGCTTGCCGCCAAAGATGTGCCAAGTTCGAGAAAAAACAAAATAAAGCCAATCGTTGCAGTTGTTGCTGCAAGCATTGTCAGTTTGTTGGTAATGCTCATGCTGATCTTACTGGTATTAAGGAAGAAACTAAGGTTCTGTGGCGCACAATTACACGACAGTCAATGTAGTGGTGGAATTGTGGCCTTTAGATACAATGATTTATGTCATGCTACTAAAAATTTCTCTGAAAAGCTGGGAGGAGGTGGTTTTGGTTCTGTATTCAAGGGAGTGCTAAGTGACTCGACTATTATAGCAGTGAAAAAGCTTGACGGTGCTCGTCAGGGAGAGAAGCAATTCAGGGCTGAGGTGAGCTCAATTGGATTGATCCAACATATCAACCTTGTCAAATTGATTGGTTTCTGTTGCGAAGGTGATGAGAGACTACTTGTGTATGAACACATGGTAAATGGTTCTCTTGATGCCCATCTGTTTCAGAGCAAGGCTACTGTCCTGAATTGGACCACCAGGTATAACCTAGCCATAGGAGTTGCTAGAGGATTGTCCTACTTGCATCAGAGCTGCAACGAATGCATCATACATTGTGATATTAAGCCAGAAAACATACTTCTCGATGCATCGTTTGCCCCTAAAATTGCAGACTTTGGGATGGCAGCATTTGTAGGAAGGAACTTTAGCCGAGTTTTGACTACATTCAGAGGCACAGTAGGATATCTTGCTCCAGAGTGGATTAGTGGAGTTGCTATTACACCAAAAGTTGATGTTTATAGCTTCGGTATGGTACTTTTGGAAATCTTATCAGGAAGAAGGAATTCATATAAAGTTCATACTGATGACAATAGTGATCAAGTTGCCTTTTTCCCTGTGCAAGCCATTAGCAAGCTTCATGAGGGAGATGTCCAGAGTTTGGTAGACCCGCAGTTAAATGGTGACTTCAGTCTAGTAGAGGTTGAAAGAGTTTGCAAAGTTGCATGTTGGTGCATCCAAGAGAATGAGATTGATCGGCCAACAATGAATGAAGTGGTCCGGGTTCTTGAGGGTTTACAGGAGCTTGATATGCCTCCAATGCCACGGCTACTTGCAGCTTTAGCAGAATGCACTGTTGTGGCTCACTGTGATGATGATTCATAA More
Protein seq		MTTLLYISLGFLLFSLHVTPPCSAATNDTLAAGEVLAVGDKLVSRNGRFTLGFFQPSVVVKSGNITSPNWYVGIWFSNISVFTTVWVANRDSPVTELQLNQTQLKLSKDGNLVISSNASIIWSSTVNRTSATTMNSSTSVVLSNDGNLVIGSSPNVLWQSFDYPSDVLLPGAKFGWNKVTGFTRRFTSKKNLIDPGLGLYYVELDNTGIDLSRSNPPNMYWSWSSEKSSSALISLLNQLININPETKGRINMTYVNNNEEEYYEYILLDESYYAYVLLDISGQIEINVWSQDTQSWKQVYAQPADPCTAYATCGPFTICNGIAHPFCDCMESFSQKSPRDWELDNRTAGCSRNTPLDCSNTTSSTDVFHTIARVRLPYNPQIVDNATTQSKCAQACLSYCSCNAYSYENSKCSIWHGDLLSVNRNDGIDNSSEDVLYLRLAAKDVPSSRKNKIKPIVAVVAASIVSLLVMLMLILLVLRKKLRFCGAQLHDSQCSGGIVAFRYNDLCHATKNFSEKLGGGGFGSVFKGVLSDSTIIAVKKLDGARQGEKQFRAEVSSIGLIQHINLVKLIGFCCEGDERLLVYEHMVNGSLDAHLFQSKATVLNWTTRYNLAIGVARGLSYLHQSCNECIIHCDIKPENILLDASFAPKIADFGMAAFVGRNFSRVLTTFRGTVGYLAPEWISGVAITPKVDVYSFGMVLLEILSGRRNSYKVHTDDNSDQVAFFPVQAISKLHEGDVQSLVDPQLNGDFSLVEVERVCKVACWCIQENEIDRPTMNEVVRVLEGLQELDMPPMPRLLAALAECTVVAHCDDDS
Function		G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [UniProtKB/Swiss-Prot:O64477]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os05g07300	LOC_Os05g07300.1	Chr05	3878198	3881797	-	MSU_osa1r7
CDS seq	ATGACCACCCTGCTTTACATATCGCTTGGCTTTCTTCTCTTCTCCCTGCACGTTACTCCGCCATGCTCTGCCGCCACGAATGATACTCTCGCGGCAGGCGAAGTGCTCGCCGTTGGTGACAAGCTTGTGTCAAGAAACGGCAGGTTCACGCTCGGCTTCTTCCAGCCAAGCGTCGTCGTTAAGTCTGGCAACATCACCTCTCCCAATTGGTATGTTGGAATATGGTTCAGTAACATCTCAGTTTTTACTACTGTCTGGGTTGCTAATAGGGATAGTCCAGTCACTGAACTCCAGCTCAATCAAACGCAGCTGAAACTATCAAAAGATGGCAACCTTGTCATCTCAAGCAATGCATCCATAATCTGGTCCAGTACTGTCAATAGGACATCAGCCACCACCATGAACAGCAGTACCAGTGTCGTTCTCTCAAACGATGGAAACCTTGTGATAGGAAGCTCACCCAATGTGTTGTGGCAGAGCTTTGACTATCCGTCAGATGTTTTGCTTCCTGGAGCCAAGTTTGGCTGGAATAAGGTCACTGGCTTTACTCGTCGGTTCACATCAAAGAAGAACCTGATTGATCCAGGTCTTGGCTTGTACTATGTTGAGCTTGACAACACAGGGATTGACCTTAGCCGTAGTAACCCCCCAAATATGTATTGGTCTTGGTCATCTGAAAAGTCATCAAGTGCACTTATATCATTACTTAATCAGCTGATAAACATAAATCCAGAGACTAAAGGTCGGATTAACATGACATATGTCAACAACAATGAAGAAGAGTACTATGAATACATTTTATTGGATGAATCATATTATGCATATGTCTTGCTAGACATCTCTGGGCAGATCGAGATAAATGTTTGGTCACAAGATACACAATCCTGGAAGCAGGTTTATGCCCAACCAGCTGATCCCTGCACGGCGTATGCTACTTGTGGACCTTTCACAATCTGCAATGGCATTGCACATCCATTCTGTGACTGTATGGAGAGCTTCTCTCAAAAGTCGCCTCGAGATTGGGAGCTTGATAATAGAACAGCAGGTTGCTCTAGAAACACTCCGTTAGATTGCAGTAACACGACAAGCTCCACAGACGTGTTCCACACCATAGCTCGTGTTAGATTGCCCTACAACCCCCAAATTGTAGACAATGCTACCACTCAGAGCAAATGTGCACAGGCTTGTCTCAGTTACTGCTCCTGCAATGCCTATTCCTACGAAAATAGTAAATGCTCTATTTGGCATGGAGATTTGCTTAGTGTAAATAGGAATGATGGCATTGATAATAGTTCTGAAGATGTTCTCTACCTTCGGCTTGCCGCCAAAGATGTGCCAAGTTCGAGAAAAAACAAAATAAAGCCAATCGTTGCAGTTGTTGCTGCAAGCATTGTCAGTTTGTTGGTAATGCTCATGCTGATCTTACTGGTATTAAGGAAGAAACTAAGGTTCTGTGGCGCACAATTACACGACAGTCAATGTAGTGGTGGAATTGTGGCCTTTAGATACAATGATTTATGTCATGCTACTAAAAATTTCTCTGAAAAGCTGGGAGGAGGTGGTTTTGGTTCTGTATTCAAGGGAGTGCTAAGTGACTCGACTATTATAGCAGTGAAAAAGCTTGACGGTGCTCGTCAGGGAGAGAAGCAATTCAGGGCTGAGGTGAGCTCAATTGGATTGATCCAACATATCAACCTTGTCAAATTGATTGGTTTCTGTTGCGAAGGTGATGAGAGACTACTTGTGTATGAACACATGGTAAATGGTTCTCTTGATGCCCATCTGTTTCAGAGCAAGGCTACTGTCCTGAATTGGACCACCAGGTATAACCTAGCCATAGGAGTTGCTAGAGGATTGTCCTACTTGCATCAGAGCTGCAACGAATGCATCATACATTGTGATATTAAGCCAGAAAACATACTTCTCGATGCATCGTTTGCCCCTAAAATTGCAGACTTTGGGATGGCAGCATTTGTAGGAAGGAACTTTAGCCGAGTTTTGACTACATTCAGAGGCACAGTAGGATATCTTGCTCCAGAGTGGATTAGTGGAGTTGCTATTACACCAAAAGTTGATGTTTATAGCTTCGGTATGGTACTTTTGGAAATCTTATCAGGAAGAAGGAATTCATATAAAGTTCATACTGATGACAATAGTGATCAAGTTGCCTTTTTCCCTGTGCAAGCCATTAGCAAGCTTCATGAGGGAGATGTCCAGAGTTTGGTAGACCCGCAGTTAAATGGTGACTTCAGTCTAGTAGAGGTTGAAAGAGTTTGCAAAGTTGCATGTTGGTGCATCCAAGAGAATGAGATTGATCGGCCAACAATGAATGAAGTGGTCCGGGTTCTTGAGGGTTTACAGGAGCTTGATATGCCTCCAATGCCACGGCTACTTGCAGCTTTAGCAGAATGCACTGTTGTGGCTCACTGTGATGATGATTCATAA More
Protein seq	MTTLLYISLGFLLFSLHVTPPCSAATNDTLAAGEVLAVGDKLVSRNGRFTLGFFQPSVVVKSGNITSPNWYVGIWFSNISVFTTVWVANRDSPVTELQLNQTQLKLSKDGNLVISSNASIIWSSTVNRTSATTMNSSTSVVLSNDGNLVIGSSPNVLWQSFDYPSDVLLPGAKFGWNKVTGFTRRFTSKKNLIDPGLGLYYVELDNTGIDLSRSNPPNMYWSWSSEKSSSALISLLNQLININPETKGRINMTYVNNNEEEYYEYILLDESYYAYVLLDISGQIEINVWSQDTQSWKQVYAQPADPCTAYATCGPFTICNGIAHPFCDCMESFSQKSPRDWELDNRTAGCSRNTPLDCSNTTSSTDVFHTIARVRLPYNPQIVDNATTQSKCAQACLSYCSCNAYSYENSKCSIWHGDLLSVNRNDGIDNSSEDVLYLRLAAKDVPSSRKNKIKPIVAVVAASIVSLLVMLMLILLVLRKKLRFCGAQLHDSQCSGGIVAFRYNDLCHATKNFSEKLGGGGFGSVFKGVLSDSTIIAVKKLDGARQGEKQFRAEVSSIGLIQHINLVKLIGFCCEGDERLLVYEHMVNGSLDAHLFQSKATVLNWTTRYNLAIGVARGLSYLHQSCNECIIHCDIKPENILLDASFAPKIADFGMAAFVGRNFSRVLTTFRGTVGYLAPEWISGVAITPKVDVYSFGMVLLEILSGRRNSYKVHTDDNSDQVAFFPVQAISKLHEGDVQSLVDPQLNGDFSLVEVERVCKVACWCIQENEIDRPTMNEVVRVLEGLQELDMPPMPRLLAALAECTVVAHCDDDS More

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os05g07300	LOC_Os05g07300.2	Chr05	3878198	3881797	-	MSU_osa1r7
CDS seq	ATGAACAGCAGTACCAGTGTCGTTCTCTCAAACGATGGAAACCTTGTGATAGGAAGCTCACCCAATGTGTTGTGGCAGAGCTTTGACTATCCGTCAGATGTTTTGCTTCCTGGAGCCAAGTTTGGCTGGAATAAGGTCACTGGCTTTACTCGTCGGTTCACATCAAAGAAGAACCTGATTGATCCAGGTCTTGGCTTGTACTATGTTGAGCTTGACAACACAGGGATTGACCTTAGCCGTAGTAACCCCCCAAATATGTATTGGTCTTGGTCATCTGAAAAGTCATCAAGTGCACTTATATCATTACTTAATCAGCTGATAAACATAAATCCAGAGACTAAAGGTCGGATTAACATGACATATGTCAACAACAATGAAGAAGAGTACTATGAATACATTTTATTGGATGAATCATATTATGCATATGTCTTGCTAGACATCTCTGGGCAGATCGAGATAAATGTTTGGTCACAAGATACACAATCCTGGAAGCAGGTTTATGCCCAACCAGCTGATCCCTGCACGGCGTATGCTACTTGTGGACCTTTCACAATCTGCAATGGCATTGCACATCCATTCTGTGACTGTATGGAGAGCTTCTCTCAAAAGTCGCCTCGAGATTGGGAGCTTGATAATAGAACAGCAGGTTGCTCTAGAAACACTCCGTTAGATTGCAGTAACACGACAAGCTCCACAGACGTGTTCCACACCATAGCTCGTGTTAGATTGCCCTACAACCCCCAAATTGTAGACAATGCTACCACTCAGAGCAAATGTGCACAGGCTTGTCTCAGTTACTGCTCCTGCAATGCCTATTCCTACGAAAATAGTAAATGCTCTATTTGGCATGGAGATTTGCTTAGTGTAAATAGGAATGATGGCATTGATAATAGTTCTGAAGATGTTCTCTACCTTCGGCTTGCCGCCAAAGATGTGCCAAGTTCGAGAAAAAACAAAATAAAGCCAATCGTTGCAGTTGTTGCTGCAAGCATTGTCAGTTTGTTGGTAATGCTCATGCTGATCTTACTGGTATTAAGGAAGAAACTAAGGTTCTGTGGCGCACAATTACACGACAGTCAATGTAGTGGTGGAATTGTGGCCTTTAGATACAATGATTTATGTCATGCTACTAAAAATTTCTCTGAAAAGCTGGGAGGAGGTGGTTTTGGTTCTGTATTCAAGGGAGTGCTAAGTGACTCGACTATTATAGCAGTGAAAAAGCTTGACGGTGCTCGTCAGGGAGAGAAGCAATTCAGGGCTGAGGTGAGCTCAATTGGATTGATCCAACATATCAACCTTGTCAAATTGATTGGTTTCTGTTGCGAAGGTGATGAGAGACTACTTGTGTATGAACACATGGTAAATGGTTCTCTTGATGCCCATCTGTTTCAGAGCAAGGCTACTGTCCTGAATTGGACCACCAGGTATAACCTAGCCATAGGAGTTGCTAGAGGATTGTCCTACTTGCATCAGAGCTGCAACGAATGCATCATACATTGTGATATTAAGCCAGAAAACATACTTCTCGATGCATCGTTTGCCCCTAAAATTGCAGACTTTGGGATGGCAGCATTTGTAGGAAGGAACTTTAGCCGAGTTTTGACTACATTCAGAGGCACAGTAGGATATCTTGCTCCAGAGTGGATTAGTGGAGTTGCTATTACACCAAAAGTTGATGTTTATAGCTTCGGTATGGTACTTTTGGAAATCTTATCAGGAAGAAGGAATTCATATAAAGTTCATACTGATGACAATAGTGATCAAGTTGCCTTTTTCCCTGTGCAAGCCATTAGCAAGCTTCATGAGGGAGATGTCCAGAGTTTGGTAGACCCGCAGTTAAATGGTGACTTCAGTCTAGTAGAGGTTGAAAGAGTTTGCAAAGTTGCATGTTGGTGCATCCAAGAGAATGAGATTGATCGGCCAACAATGAATGAAGTGGTCCGGGTTCTTGAGGGTTTACAGGAGCTTGATATGCCTCCAATGCCACGGCTACTTGCAGCTTTAGCAGAATGCACTGTTGTGGCTCACTGTGATGATGATTCATAA More
Protein seq	MNSSTSVVLSNDGNLVIGSSPNVLWQSFDYPSDVLLPGAKFGWNKVTGFTRRFTSKKNLIDPGLGLYYVELDNTGIDLSRSNPPNMYWSWSSEKSSSALISLLNQLININPETKGRINMTYVNNNEEEYYEYILLDESYYAYVLLDISGQIEINVWSQDTQSWKQVYAQPADPCTAYATCGPFTICNGIAHPFCDCMESFSQKSPRDWELDNRTAGCSRNTPLDCSNTTSSTDVFHTIARVRLPYNPQIVDNATTQSKCAQACLSYCSCNAYSYENSKCSIWHGDLLSVNRNDGIDNSSEDVLYLRLAAKDVPSSRKNKIKPIVAVVAASIVSLLVMLMLILLVLRKKLRFCGAQLHDSQCSGGIVAFRYNDLCHATKNFSEKLGGGGFGSVFKGVLSDSTIIAVKKLDGARQGEKQFRAEVSSIGLIQHINLVKLIGFCCEGDERLLVYEHMVNGSLDAHLFQSKATVLNWTTRYNLAIGVARGLSYLHQSCNECIIHCDIKPENILLDASFAPKIADFGMAAFVGRNFSRVLTTFRGTVGYLAPEWISGVAITPKVDVYSFGMVLLEILSGRRNSYKVHTDDNSDQVAFFPVQAISKLHEGDVQSLVDPQLNGDFSLVEVERVCKVACWCIQENEIDRPTMNEVVRVLEGLQELDMPPMPRLLAALAECTVVAHCDDDS More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.726653	0.860269	0.255870

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_05g0165900	RBH	0.000000	0.000000	1.266664
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os07g30510	SBH	0.000000	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os05g0165900	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_05g0004670	RBH	0.328666	2.882594	3.792384
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_05g0004720	RBH	0.272087	0.984221	1.162947
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_05g0004600	RBH	0.358280	3.427163	3.791794
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_05g0004690	RBH	0.104604	0.043189	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_05g0004770	RBH	0.889360	2.532526	5.295527
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_05G0055700	SBH	2.6570935	7.0126555	7.5057385
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_05g0004540	RBH	0.203307	0.0	0.564514
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_05G0056300	SBH	0.0437045	0.008433	0
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_05g0004680	RBH	0.041213	0.096640	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_05g0004600	RBH	0.355558	2.768361	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_05g0004690	RBH	2.585844	14.050182	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_05g0004720	RBH	0.671889	0.626201	0.510755
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_05g0004760	RBH	0.227514	2.127516	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_05G004650	RBH	0.093306	0.506809	0.607557
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_05g0004870	RBH	0.395104	0.000000	0.625541

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.