Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0023280 | OGI:04083660 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:27935722-27939043 | ||||||||
| Gene Symbol | OsHDMA701, HDMA701, OsPAO9, PAO9 | ||||||||||
| DNA seq | gaaacgaaggtgcaaatatgtttcattcaatcaccaaatcatttacatcagcttaactactcctactacaatttgtgaatccggtaatcttcactataagattcttcagtaataagtaaatagtttgactgccgatacaagcaggttttgctaccttcgcatacccttcagatgcaggtgccatataaatctgggaaatctcaaaaatctaactagtaccgttgtatcatctaacaatcaccaaaaatgtgatatcagaatgttctgggacaaagccagcgctcagtagaagcttcatgcgaacaaacagcatgattaccaggtagaaacacgattgacaggataaagaaaaatcatgcggtcaagcttctaaatcaaagtatcagtaactctagatcataatgcagctaattcaggaactcaagatttagatttagggattccaatttttaattttgagggcctagttttagttctactgctgttccgctctgccttaatggatgcaatcacagcatcagcccccggaccaagacctttcctgccaactaatttcacaccaagcttttcacagaggtaatgcagcctcatttcatcacctcctctaacctctcttagctccatagcctgctgtcgtgatagtaatgtgtagacataaagttgttgttgctggttgaaatgtgattggagttgctgaaacaacaatttatttgagtggtgctggtccgcctttcccccttcagttgcacctttctttctagggccacctagttccaccttcagaatggctggggactttggatcagaagcttgtccaccaaaaatgacagagaagctgccaaattccaaatctggttgcctaaacaagtccatgagtagagcagcacaggcctgtgtatttgttgatggacctttttcaactttgctctttgctgctcgggcattggcatggagagtgatatttgcagcctcccgcagaccactgatgaaagcaccatgcattgttgctggataacgtctcgtggtggcctctccagcgaaaaacaaccgcccatctccaacactttcagctagtatgtcatagtcatctccagatgctccaacagcaacatgagaatacgaacctagactgaaggagtctgtgccccatctagtacaaacactctgcagaggatctgggacctcaataccttgaggttcatagatacctgagatacacaacattcaccttttagacaaaaaaccaaggttttaagcagtcgaacctattgtaacaacatactacatacatgtctacatatatttcagtgcagttgcagaggtatgaggttaatggaacaaagagtctgttgcaacttgcaaagagtcacttgggtgaggcatattgaagtaccaccttatgcatatagtcatatagtgatctaaaatacgatgatagattttacatcgctagatgaccatttacataaggtagtaaaaaattctgatggtagcgtattaaaaaaaaactgatgataggagataaaggtcttacctctcagtatcttgagaacagaactgacagcatcagtagggggtgtggtttcaaagttgtgggcagcttcaccagcaaccagtgccatcagcaatggaccaccggccactgttgcataactatagaacagaaagaactctccacgatgacttgggtcttcagtcaggtgtccaaaggtatcaaggtcagtgctccagaaaacatgaggaaacaacattgcaaccttgttcaacaacccaaagcctagtcttttaatactatcaagttttctctgtggcagctcaggtacaaacttgacgccaccatttttcagaaccccaagtggaacagtgcacagcgccatgtcgccttcatacacctgcccaccattgacaaccacctgaaccccatcccctccataacgtatagtgtgcactgtcctctcgtaaacaatcggcacattctctgccagggcctgcacaagcctaccattgccgccaggcaagaaacagtgatccccgcccatgtcatacggatcgtcctggtcccagaatgcaaggctcagctttgacagcaaccctgcattagcatactccagatttgctaagtgccaattgaacaagttcatctcctggtcagtagagagatcgccatccgtctgccgtaacgtctcaagtgcagcgccaagcgagacatccatcgccacatcccccattgatgcccgtagaagactagacttatcaagaagcttgttaaatgtaccctccactttcttatctacctctggatcaactggtgacccatcaggcctgtaaagtgggcacttgtccctgatcttgtgcatcggcaagccgagctgtttcgccacaatgcccagcgggttcccgaatgtgccggtaagcacactgccgccaaggtcaccagcagctgagcgtccacctccttccatcttcttggtgtacacacggccaccgcaccgcttgcggccctccaacaccaccactttaaatccgaacgccaccagctgccgtgccgcggcgagcccagcaaggccggcgccgacaacgatgacggtgttgtgcctcgtgggctccttggggatgcgctccttgatggcgggcgccacgccgaagttgatgtggccatgggagacgaggaaggagtaggcggcgttgaggaggtggtcgcagtgtggcgggatgagcgtcgcgaaggactccttggcgagccacgagttgaaggtctcgcgccacctggtgaggaggtggttgcggatgaggatgtagttcacctgctcgatgccgcccacgtcggagaccacgcccgcctcgatctcctcgtcggtgagggagtccgccgggaagcccgcggtgagtgcggtgaccgcctccgctgtcggctcccggttgatcacgatgatgtcgtcggcggcggaggcgcggggcggcggctgggcggaaggagacgcagcgacggcgacgggcgcggcgggggagccggaggggagcttgcggcggaagccggtgcgcttgcgcttgttggggaaggcggggttggggaggacaagggtgggggtggacgcgggatcgggggtttggtcggggtaggggttcgggggaaaggaggagaggagggggaggggggtgtagggaggtggttggtcagacatggtcgccggcggcggaggcaaagccggcgcgcctgctcgataaatctggtgggggtttagatggggatgggaacggtgcgagtcggagccatctatctggtcgggtgcgcggcgcggctgtgcgggacctagcgggaggt
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| CDS seq | atgtctgaccaaccacctccctacacccccctccccctcctctcctcctttcccccgaacccctaccccgaccaaacccccgatcccgcgtccacccccacccttgtcctccccaaccccgccttccccaacaagcgcaagcgcaccggcttccgccgcaagctcccctccggctcccccgccgcgcccgtcgccgtcgctgcgtctccttccgcccagccgccgccccgcgcctccgccgccgacgacatcatcgtgatcaaccgggagccgacagcggaggcggtcaccgcactcaccgcgggcttcccggcggactccctcaccgacgaggagatcgaggcgggcgtggtctccgacgtgggcggcatcgagcaggtgaactacatcctcatccgcaaccacctcctcaccaggtggcgcgagaccttcaactcgtggctcgccaaggagtccttcgcgacgctcatcccgccacactgcgaccacctcctcaacgccgcctactccttcctcgtctcccatggccacatcaacttcggcgtggcgcccgccatcaaggagcgcatccccaaggagcccacgaggcacaacaccgtcatcgttgtcggcgccggccttgctgggctcgccgcggcacggcagctggtggcgttcggatttaaagtggtggtgttggagggccgcaagcggtgcggtggccgtgtgtacaccaagaagatggaaggaggtggacgctcagctgctggtgaccttggcggcagtgtgcttaccggcacattcgggaacccgctgggcattgtggcgaaacagctcggcttgccgatgcacaagatcagggacaagtgcccactttacaggcctgatgggtcaccagttgatccagaggtagataagaaagtggagggtacatttaacaagcttcttgataagtctagtcttctacgggcatcaatgggggatgtggcgatggatgtctcgcttggcgctgcacttgagacgttacggcagacggatggcgatctctctactgaccaggagatgaacttgttcaattggcacttagcaaatctggagtatgctaatgcagggttgctgtcaaagctgagccttgcattctgggaccaggacgatccgtatgacatgggcggggatcactgtttcttgcctggcggcaatggtaggcttgtgcaggccctggcagagaatgtgccgattgtttacgagaggacagtgcacactatacgttatggaggggatggggttcaggtggttgtcaatggtgggcaggtgtatgaaggcgacatggcgctgtgcactgttccacttggggttctgaaaaatggtggcgtcaagtttgtacctgagctgccacagagaaaacttgatagtattaaaagactaggctttgggttgttgaacaaggttgcaatgttgtttcctcatgttttctggagcactgaccttgatacctttggacacctgactgaagacccaagtcatcgtggagagttctttctgttctatagttatgcaacagtggccggtggtccattgctgatggcactggttgctggtgaagctgcccacaactttgaaaccacaccccctactgatgctgtcagttctgttctcaagatactgagaggtatctatgaacctcaaggtattgaggtcccagatcctctgcagagtgtttgtactagatggggcacagactccttcagtctaggttcgtattctcatgttgctgttggagcatctggagatgactatgacatactagctgaaagtgttggagatgggcggttgtttttcgctggagaggccaccacgagacgttatccagcaacaatgcatggtgctttcatcagtggtctgcgggaggctgcaaatatcactctccatgccaatgcccgagcagcaaagagcaaagttgaaaaaggtccatcaacaaatacacaggcctgtgctgctctactcatggacttgtttaggcaaccagatttggaatttggcagcttctctgtcatttttggtggacaagcttctgatccaaagtccccagccattctgaaggtggaactaggtggccctagaaagaaaggtgcaactgaagggggaaaggcggaccagcaccactcaaataaattgttgtttcagcaactccaatcacatttcaaccagcaacaacaactttatgtctacacattactatcacgacagcaggctatggagctaagagaggttagaggaggtgatgaaatgaggctgcattacctctgtgaaaagcttggtgtgaaattagttggcaggaaaggtcttggtccgggggctgatgctgtgattgcatccattaaggcagagcggaacagcagtagaactaaaactaggccctcaaaattaaaaattggaatccctaaatctaaatcttga
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| Protein seq | MSDQPPPYTPLPLLSSFPPNPYPDQTPDPASTPTLVLPNPAFPNKRKRTGFRRKLPSGSPAAPVAVAASPSAQPPPRASAADDIIVINREPTAEAVTALTAGFPADSLTDEEIEAGVVSDVGGIEQVNYILIRNHLLTRWRETFNSWLAKESFATLIPPHCDHLLNAAYSFLVSHGHINFGVAPAIKERIPKEPTRHNTVIVVGAGLAGLAAARQLVAFGFKVVVLEGRKRCGGRVYTKKMEGGGRSAAGDLGGSVLTGTFGNPLGIVAKQLGLPMHKIRDKCPLYRPDGSPVDPEVDKKVEGTFNKLLDKSSLLRASMGDVAMDVSLGAALETLRQTDGDLSTDQEMNLFNWHLANLEYANAGLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALAENVPIVYERTVHTIRYGGDGVQVVVNGGQVYEGDMALCTVPLGVLKNGGVKFVPELPQRKLDSIKRLGFGLLNKVAMLFPHVFWSTDLDTFGHLTEDPSHRGEFFLFYSYATVAGGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQSVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFISGLREAANITLHANARAAKSKVEKGPSTNTQACAALLMDLFRQPDLEFGSFSVIFGGQASDPKSPAILKVELGGPRKKGATEGGKADQHHSNKLLFQQLQSHFNQQQQLYVYTLLSRQQAMELREVRGGDEMRLHYLCEKLGVKLVGRKGLGPGADAVIASIKAERNSSRTKTRPSKLKIGIPKSKS |
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| Function | Lysine-specific histone demethylase 1 homolog 3 [UniProtKB/Swiss-Prot:Q01H90] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0023280 | OsCMeo_04g0023280.01 | Chr04 | 27935722 | 27939043 | - | NAM | ||
| CDS seq | atgtctgaccaaccacctccctacacccccctccccctcctctcctcctttcccccgaacccctaccccgaccaaacccccgatcccgcgtccacccccacccttgtcctccccaaccccgccttccccaacaagcgcaagcgcaccggcttccgccgcaagctcccctccggctcccccgccgcgcccgtcgccgtcgctgcgtctccttccgcccagccgccgccccgcgcctccgccgccgacgacatcatcgtgatcaaccgggagccgacagcggaggcggtcaccgcactcaccgcgggcttcccggcggactccctcaccgacgaggagatcgaggcgggcgtggtctccgacgtgggcggcatcgagcaggtgaactacatcctcatccgcaaccacctcctcaccaggtggcgcgagaccttcaactcgtggctcgccaaggagtccttcgcgacgctcatcccgccacactgcgaccacctcctcaacgccgcctactccttcctcgtctcccatggccacatcaacttcggcgtggcgcccgccatcaaggagcgcatccccaaggagcccacgaggcacaacaccgtcatcgttgtcggcgccggccttgctgggctcgccgcggcacggcagctggtggcgttcggatttaaagtggtggtgttggagggccgcaagcggtgcggtggccgtgtgtacaccaagaagatggaaggaggtggacgctcagctgctggtgaccttggcggcagtgtgcttaccggcacattcgggaacccgctgggcattgtggcgaaacagctcggcttgccgatgcacaagatcagggacaagtgcccactttacaggcctgatgggtcaccagttgatccagaggtagataagaaagtggagggtacatttaacaagcttcttgataagtctagtcttctacgggcatcaatgggggatgtggcgatggatgtctcgcttggcgctgcacttgagacgttacggcagacggatggcgatctctctactgaccaggagatgaacttgttcaattggcacttagcaaatctggagtatgctaatgcagggttgctgtcaaagctgagccttgcattctgggaccaggacgatccgtatgacatgggcggggatcactgtttcttgcctggcggcaatggtaggcttgtgcaggccctggcagagaatgtgccgattgtttacgagaggacagtgcacactatacgttatggaggggatggggttcaggtggttgtcaatggtgggcaggtgtatgaaggcgacatggcgctgtgcactgttccacttggggttctgaaaaatggtggcgtcaagtttgtacctgagctgccacagagaaaacttgatagtattaaaagactaggctttgggttgttgaacaaggttgcaatgttgtttcctcatgttttctggagcactgaccttgatacctttggacacctgactgaagacccaagtcatcgtggagagttctttctgttctatagttatgcaacagtggccggtggtccattgctgatggcactggttgctggtgaagctgcccacaactttgaaaccacaccccctactgatgctgtcagttctgttctcaagatactgagaggtatctatgaacctcaaggtattgaggtcccagatcctctgcagagtgtttgtactagatggggcacagactccttcagtctaggttcgtattctcatgttgctgttggagcatctggagatgactatgacatactagctgaaagtgttggagatgggcggttgtttttcgctggagaggccaccacgagacgttatccagcaacaatgcatggtgctttcatcagtggtctgcgggaggctgcaaatatcactctccatgccaatgcccgagcagcaaagagcaaagttgaaaaaggtccatcaacaaatacacaggcctgtgctgctctactcatggacttgtttaggcaaccagatttggaatttggcagcttctctgtcatttttggtggacaagcttctgatccaaagtccccagccattctgaaggtggaactaggtggccctagaaagaaaggtgcaactgaagggggaaaggcggaccagcaccactcaaataaattgttgtttcagcaactccaatcacatttcaaccagcaacaacaactttatgtctacacattactatcacgacagcaggctatggagctaagagaggttagaggaggtgatgaaatgaggctgcattacctctgtgaaaagcttggtgtgaaattagttggcaggaaaggtcttggtccgggggctgatgctgtgattgcatccattaaggcagagcggaacagcagtagaactaaaactaggccctcaaaattaaaaattggaatccctaaatctaaatcttga
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| Protein seq | MSDQPPPYTPLPLLSSFPPNPYPDQTPDPASTPTLVLPNPAFPNKRKRTGFRRKLPSGSPAAPVAVAASPSAQPPPRASAADDIIVINREPTAEAVTALTAGFPADSLTDEEIEAGVVSDVGGIEQVNYILIRNHLLTRWRETFNSWLAKESFATLIPPHCDHLLNAAYSFLVSHGHINFGVAPAIKERIPKEPTRHNTVIVVGAGLAGLAAARQLVAFGFKVVVLEGRKRCGGRVYTKKMEGGGRSAAGDLGGSVLTGTFGNPLGIVAKQLGLPMHKIRDKCPLYRPDGSPVDPEVDKKVEGTFNKLLDKSSLLRASMGDVAMDVSLGAALETLRQTDGDLSTDQEMNLFNWHLANLEYANAGLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALAENVPIVYERTVHTIRYGGDGVQVVVNGGQVYEGDMALCTVPLGVLKNGGVKFVPELPQRKLDSIKRLGFGLLNKVAMLFPHVFWSTDLDTFGHLTEDPSHRGEFFLFYSYATVAGGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQSVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFISGLREAANITLHANARAAKSKVEKGPSTNTQACAALLMDLFRQPDLEFGSFSVIFGGQASDPKSPAILKVELGGPRKKGATEGGKADQHHSNKLLFQQLQSHFNQQQQLYVYTLLSRQQAMELREVRGGDEMRLHYLCEKLGVKLVGRKGLGPGADAVIASIKAERNSSRTKTRPSKLKIGIPKSKS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.943938 | 2.976583 | 3.292224 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0560300 | RBH | 1.251890 | 0.809690 | 1.932250 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g47270 | RBH | 0.838023 | 0.548727 | 0.470872 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0560300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0022830 | RBH | 0.320047 | 4.414949 | 3.334959 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0023560 | RBH | 0.120199 | 0.242846 | 0.983296 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0023040 | RBH | 0.143253 | 0.108715 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0023170 | RBH | 5.471848 | 1.221470 | 7.763524 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0440600 | RBH | 4.504318 | 5.9216735 | 7.591991 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0022010 | RBH | 0.182260 | 0.164723 | 0.665009 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0444200 | RBH | 3.8531055 | 5.2184625 | 10.413506 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022500 | RBH | 0.056782 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0022330 | RBH | 0.722921 | 3.623585 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0022450 | RBH | 1.658380 | 6.667635 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0022830 | RBH | 0.241702 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0023040 | RBH | 0.124674 | 3.484513 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G022250 | RBH | 0.107104 | 0.303798 | 0.850831 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0022170 | RBH | 0.972145 | 7.929204 | 3.485603 |
