Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os04g47270 OGI:04083660 | 16/16 Nipponbare | IRGSP 1.0 | MSU Chr04:28067096-28070371
Gene Symbol OsHDMA701, HDMA701, OsPAO9, PAO9
DNA seq

GACAAACACCTCACTTTTCTTTCTTTTTTTTTGAAACGAAGGTGCAAATATGTTTCATTCAATCACCAAATCATTTACATCAGCTTAACTACTCCTACTACAATTTGTGAATCCGGTAATCTTCACTATAAGATTCTTCAGTAATAAGTAAATAGTTTGACTGCCGATACAAGCAGGTTTTGCTACCTTCGCATACCCTTCAGATGCAGGTGCCATATAAATCTGGGAAATCTCAAAAATCTAACTAGTACCGTTGTATCATCTAACAATCACCAAAAATGTGATATCAGAATGTTCTGGGACAAAGCCAGCGCTCAGTAGAAGCTTCATGCGAACAAACAGCATGATTACCAGGTAGAAACACGATTGACAGGATAAAGAAAAATCATGCGGTCAAGCTTCTAAATCAAAGTATCAGTAACTCTAGATCATAATGCAGCTAATTCAGGAACTCAAGATTTAGATTTAGGGATTCCAATTTTTAATTTTGAGGGCCTAGTTTTAGTTCTACTGCTGTTCCGCTCTGCCTTAATGGATGCAATCACAGCATCAGCCCCCGGACCAAGACCTTTCCTGCCAACTAATTTCACACCAAGCTTTTCACAGAGGTAATGCAGCCTCATTTCATCACCTCCTCTAACCTCTCTTAGCTCCATAGCCTGCTGTCGTGATAGTAATGTGTAGACATAAAGTTGTTGTTGCTGGTTGAAATGTGATTGGAGTTGCTGAAACAACAATTTATTTGAGTGGTGCTGGTCCGCCTTTCCCCCTTCAGTTGCACCTTTCTTTCTAGGGCCACCTAGTTCCACCTTCAGAATGGCTGGGGACTTTGGATCAGAAGCTTGTCCACCAAAAATGACAGAGAAGCTGCCAAATTCCAAATCTGGTTGCCTAAACAAGTCCATGAGTAGAGCAGCACAGGCCTGTGTATTTGTTGATGGACCTTTTTCAACTTTGCTCTTTGCTGCTCGGGCATTGGCATGGAGAGTGATATTTGCAGCCTCCCGCAGACCACTGATGAAAGCACCATGCATTGTTGCTGGATAACGTCTCGTGGTGGCCTCTCCAGCGAAAAACAACCGCCCATCTCCAACACTTTCAGCTAGTATGTCATAGTCATCTCCAGATGCTCCAACAGCAACATGAGAATACGAACCTAGACTGAAGGAGTCTGTGCCCCATCTAGTACAAACACTCTGCAGAGGATCTGGGACCTCAATACCTTGAGGTTCATAGATACCTGAGATACACAACATTCACCTTTTAGACAAAAAACCAAGGTTTTAAGCAGTCGAACCTATTGTAACAACATACTACATACATGTCTACATATATTTCAGTGCAGTTGCAGAGGTATGAGGTTAATGGAACAAAGAGTCTGTTGCAACTTGCAAAGAGTCACTTGGGTGAGGCATATTGAAGTACCACCTTATGCATATAGTCATATAGTGATCTAAAATACGATGATAGATTTTACATCGCTAGATGACCATTTACATAAGGTAGTAAAAAATTCTGATGGTAGCGTATTAAAAAAAAACTGATGATAGGAGATAAAGGTCTTACCTCTCAGTATCTTGAGAACAGAACTGACAGCATCAGTAGGGGGTGTGGTTTCAAAGTTGTGGGCAGCTTCACCAGCAACCAGTGCCATCAGCAATGGACCACCGGCCACTGTTGCATAACTATAGAACAGAAAGAACTCTCCACGATGACTTGGGTCTTCAGTCAGGTGTCCAAAGGTATCAAGGTCAGTGCTCCAGAAAACATGAGGAAACAACATTGCAACCTTGTTCAACAACCCAAAGCCTAGTCTTTTAATACTATCAAGTTTTCTCTGTGGCAGCTCAGGTACAAACTTGACGCCACCATTTTTCAGAACCCCAAGTGGAACAGTGCACAGCGCCATGTCGCCTTCATACACCTGCCCACCATTGACAACCACCTGAACCCCATCCCCTCCATAACGTATAGTGTGCACTGTCCTCTCGTAAACAATCGGCACATTCTCTGCCAGGGCCTGCACAAGCCTACCATTGCCGCCAGGCAAGAAACAGTGATCCCCGCCCATGTCATACGGATCGTCCTGGTCCCAGAATGCAAGGCTCAGCTTTGACAGCAACCCTGCATTAGCATACTCCAGATTTGCTAAGTGCCAATTGAACAAGTTCATCTCCTGGTCAGTAGAGAGATCGCCATCCGTCTGCCGTAACGTCTCAAGTGCAGCGCCAAGCGAGACATCCATCGCCACATCCCCCATTGATGCCCGTAGAAGACTAGACTTATCAAGAAGCTTGTTAAATGTACCCTCCACTTTCTTATCTACCTCTGGATCAACTGGTGACCCATCAGGCCTGTAAAGTGGGCACTTGTCCCTGATCTTGTGCATCGGCAAGCCGAGCTGTTTCGCCACAATGCCCAGCGGGTTCCCGAATGTGCCGGTAAGCACACTGCCGCCAAGGTCACCAGCAGCTGAGCGTCCACCTCCTTCCATCTTCTTGGTGTACACACGGCCACCGCACCGCTTGCGGCCCTCCAACACCACCACTTTAAATCCGAACGCCACCAGCTGCCGTGCCGCGGCGAGCCCAGCAAGGCCGGCGCCGACAACGATGACGGTGTTGTGCCTCGTGGGCTCCTTGGGGATGCGCTCCTTGATGGCGGGCGCCACGCCGAAGTTGATGTGGCCATGGGAGACGAGGAAGGAGTAGGCGGCGTTGAGGAGGTGGTCGCAGTGTGGCGGGATGAGCGTCGCGAAGGACTCCTTGGCGAGCCACGAGTTGAAGGTCTCGCGCCACCTGGTGAGGAGGTGGTTGCGGATGAGGATGTAGTTCACCTGCTCGATGCCGCCCACGTCGGAGACCACGCCCGCCTCGATCTCCTCGTCGGTGAGGGAGTCCGCCGGGAAGCCCGCGGTGAGTGCGGTGACCGCCTCCGCTGTCGGCTCCCGGTTGATCACGATGATGTCGTCGGCGGCGGAGGCGCGGGGCGGCGGCTGGGCGGAAGGAGACGCAGCGACGGCGACGGGCGCGGCGGGGGAGCCGGAGGGGAGCTTGCGGCGGAAGCCGGTGCGCTTGCGCTTGTTGGGGAAGGCGGGGTTGGGGAGGACAAGGGTGGGGGTGGACGCGGGATCGGGGGTTTGGTCGGGGTAGGGGTTCGGGGGAAAGGAGGAGAGGAGGGGGAGGGGGGTGTAGGGAGGTGGTTGGTCAGACATGGTCGCCGGCGGCGGAGGCAAAGCCGGCGCGCCTGCTCGATAAATCTGGTGGGGGTTTAGAT

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CDS seq

ATGTCTGACCAACCACCTCCCTACACCCCCCTCCCCCTCCTCTCCTCCTTTCCCCCGAACCCCTACCCCGACCAAACCCCCGATCCCGCGTCCACCCCCACCCTTGTCCTCCCCAACCCCGCCTTCCCCAACAAGCGCAAGCGCACCGGCTTCCGCCGCAAGCTCCCCTCCGGCTCCCCCGCCGCGCCCGTCGCCGTCGCTGCGTCTCCTTCCGCCCAGCCGCCGCCCCGCGCCTCCGCCGCCGACGACATCATCGTGATCAACCGGGAGCCGACAGCGGAGGCGGTCACCGCACTCACCGCGGGCTTCCCGGCGGACTCCCTCACCGACGAGGAGATCGAGGCGGGCGTGGTCTCCGACGTGGGCGGCATCGAGCAGGTGAACTACATCCTCATCCGCAACCACCTCCTCACCAGGTGGCGCGAGACCTTCAACTCGTGGCTCGCCAAGGAGTCCTTCGCGACGCTCATCCCGCCACACTGCGACCACCTCCTCAACGCCGCCTACTCCTTCCTCGTCTCCCATGGCCACATCAACTTCGGCGTGGCGCCCGCCATCAAGGAGCGCATCCCCAAGGAGCCCACGAGGCACAACACCGTCATCGTTGTCGGCGCCGGCCTTGCTGGGCTCGCCGCGGCACGGCAGCTGGTGGCGTTCGGATTTAAAGTGGTGGTGTTGGAGGGCCGCAAGCGGTGCGGTGGCCGTGTGTACACCAAGAAGATGGAAGGAGGTGGACGCTCAGCTGCTGGTGACCTTGGCGGCAGTGTGCTTACCGGCACATTCGGGAACCCGCTGGGCATTGTGGCGAAACAGCTCGGCTTGCCGATGCACAAGATCAGGGACAAGTGCCCACTTTACAGGCCTGATGGGTCACCAGTTGATCCAGAGGTAGATAAGAAAGTGGAGGGTACATTTAACAAGCTTCTTGATAAGTCTAGTCTTCTACGGGCATCAATGGGGGATGTGGCGATGGATGTCTCGCTTGGCGCTGCACTTGAGACGTTACGGCAGACGGATGGCGATCTCTCTACTGACCAGGAGATGAACTTGTTCAATTGGCACTTAGCAAATCTGGAGTATGCTAATGCAGGGTTGCTGTCAAAGCTGAGCCTTGCATTCTGGGACCAGGACGATCCGTATGACATGGGCGGGGATCACTGTTTCTTGCCTGGCGGCAATGGTAGGCTTGTGCAGGCCCTGGCAGAGAATGTGCCGATTGTTTACGAGAGGACAGTGCACACTATACGTTATGGAGGGGATGGGGTTCAGGTGGTTGTCAATGGTGGGCAGGTGTATGAAGGCGACATGGCGCTGTGCACTGTTCCACTTGGGGTTCTGAAAAATGGTGGCGTCAAGTTTGTACCTGAGCTGCCACAGAGAAAACTTGATAGTATTAAAAGACTAGGCTTTGGGTTGTTGAACAAGGTTGCAATGTTGTTTCCTCATGTTTTCTGGAGCACTGACCTTGATACCTTTGGACACCTGACTGAAGACCCAAGTCATCGTGGAGAGTTCTTTCTGTTCTATAGTTATGCAACAGTGGCCGGTGGTCCATTGCTGATGGCACTGGTTGCTGGTGAAGCTGCCCACAACTTTGAAACCACACCCCCTACTGATGCTGTCAGTTCTGTTCTCAAGATACTGAGAGGTATCTATGAACCTCAAGGTATTGAGGTCCCAGATCCTCTGCAGAGTGTTTGTACTAGATGGGGCACAGACTCCTTCAGTCTAGGTTCGTATTCTCATGTTGCTGTTGGAGCATCTGGAGATGACTATGACATACTAGCTGAAAGTGTTGGAGATGGGCGGTTGTTTTTCGCTGGAGAGGCCACCACGAGACGTTATCCAGCAACAATGCATGGTGCTTTCATCAGTGGTCTGCGGGAGGCTGCAAATATCACTCTCCATGCCAATGCCCGAGCAGCAAAGAGCAAAGTTGAAAAAGGTCCATCAACAAATACACAGGCCTGTGCTGCTCTACTCATGGACTTGTTTAGGCAACCAGATTTGGAATTTGGCAGCTTCTCTGTCATTTTTGGTGGACAAGCTTCTGATCCAAAGTCCCCAGCCATTCTGAAGGTGGAACTAGGTGGCCCTAGAAAGAAAGGTGCAACTGAAGGGGGAAAGGCGGACCAGCACCACTCAAATAAATTGTTGTTTCAGCAACTCCAATCACATTTCAACCAGCAACAACAACTTTATGTCTACACATTACTATCACGACAGCAGGCTATGGAGCTAAGAGAGGTTAGAGGAGGTGATGAAATGAGGCTGCATTACCTCTGTGAAAAGCTTGGTGTGAAATTAGTTGGCAGGAAAGGTCTTGGTCCGGGGGCTGATGCTGTGATTGCATCCATTAAGGCAGAGCGGAACAGCAGTAGAACTAAAACTAGGCCCTCAAAATTAAAAATTGGAATCCCTAAATCTAAATCTTGA

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Protein seq

MSDQPPPYTPLPLLSSFPPNPYPDQTPDPASTPTLVLPNPAFPNKRKRTGFRRKLPSGSPAAPVAVAASPSAQPPPRASAADDIIVINREPTAEAVTALTAGFPADSLTDEEIEAGVVSDVGGIEQVNYILIRNHLLTRWRETFNSWLAKESFATLIPPHCDHLLNAAYSFLVSHGHINFGVAPAIKERIPKEPTRHNTVIVVGAGLAGLAAARQLVAFGFKVVVLEGRKRCGGRVYTKKMEGGGRSAAGDLGGSVLTGTFGNPLGIVAKQLGLPMHKIRDKCPLYRPDGSPVDPEVDKKVEGTFNKLLDKSSLLRASMGDVAMDVSLGAALETLRQTDGDLSTDQEMNLFNWHLANLEYANAGLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALAENVPIVYERTVHTIRYGGDGVQVVVNGGQVYEGDMALCTVPLGVLKNGGVKFVPELPQRKLDSIKRLGFGLLNKVAMLFPHVFWSTDLDTFGHLTEDPSHRGEFFLFYSYATVAGGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQSVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFISGLREAANITLHANARAAKSKVEKGPSTNTQACAALLMDLFRQPDLEFGSFSVIFGGQASDPKSPAILKVELGGPRKKGATEGGKADQHHSNKLLFQQLQSHFNQQQQLYVYTLLSRQQAMELREVRGGDEMRLHYLCEKLGVKLVGRKGLGPGADAVIASIKAERNSSRTKTRPSKLKIGIPKSKS

Function Lysine-specific histone demethylase 1 homolog 3 [UniProtKB/Swiss-Prot:Q01H90]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os04g47270 LOC_Os04g47270.1 Chr04 28067096 28070371 - MSU_osa1r7
CDS seq

ATGTCTGACCAACCACCTCCCTACACCCCCCTCCCCCTCCTCTCCTCCTTTCCCCCGAACCCCTACCCCGACCAAACCCCCGATCCCGCGTCCACCCCCACCCTTGTCCTCCCCAACCCCGCCTTCCCCAACAAGCGCAAGCGCACCGGCTTCCGCCGCAAGCTCCCCTCCGGCTCCCCCGCCGCGCCCGTCGCCGTCGCTGCGTCTCCTTCCGCCCAGCCGCCGCCCCGCGCCTCCGCCGCCGACGACATCATCGTGATCAACCGGGAGCCGACAGCGGAGGCGGTCACCGCACTCACCGCGGGCTTCCCGGCGGACTCCCTCACCGACGAGGAGATCGAGGCGGGCGTGGTCTCCGACGTGGGCGGCATCGAGCAGGTGAACTACATCCTCATCCGCAACCACCTCCTCACCAGGTGGCGCGAGACCTTCAACTCGTGGCTCGCCAAGGAGTCCTTCGCGACGCTCATCCCGCCACACTGCGACCACCTCCTCAACGCCGCCTACTCCTTCCTCGTCTCCCATGGCCACATCAACTTCGGCGTGGCGCCCGCCATCAAGGAGCGCATCCCCAAGGAGCCCACGAGGCACAACACCGTCATCGTTGTCGGCGCCGGCCTTGCTGGGCTCGCCGCGGCACGGCAGCTGGTGGCGTTCGGATTTAAAGTGGTGGTGTTGGAGGGCCGCAAGCGGTGCGGTGGCCGTGTGTACACCAAGAAGATGGAAGGAGGTGGACGCTCAGCTGCTGGTGACCTTGGCGGCAGTGTGCTTACCGGCACATTCGGGAACCCGCTGGGCATTGTGGCGAAACAGCTCGGCTTGCCGATGCACAAGATCAGGGACAAGTGCCCACTTTACAGGCCTGATGGGTCACCAGTTGATCCAGAGGTAGATAAGAAAGTGGAGGGTACATTTAACAAGCTTCTTGATAAGTCTAGTCTTCTACGGGCATCAATGGGGGATGTGGCGATGGATGTCTCGCTTGGCGCTGCACTTGAGACGTTACGGCAGACGGATGGCGATCTCTCTACTGACCAGGAGATGAACTTGTTCAATTGGCACTTAGCAAATCTGGAGTATGCTAATGCAGGGTTGCTGTCAAAGCTGAGCCTTGCATTCTGGGACCAGGACGATCCGTATGACATGGGCGGGGATCACTGTTTCTTGCCTGGCGGCAATGGTAGGCTTGTGCAGGCCCTGGCAGAGAATGTGCCGATTGTTTACGAGAGGACAGTGCACACTATACGTTATGGAGGGGATGGGGTTCAGGTGGTTGTCAATGGTGGGCAGGTGTATGAAGGCGACATGGCGCTGTGCACTGTTCCACTTGGGGTTCTGAAAAATGGTGGCGTCAAGTTTGTACCTGAGCTGCCACAGAGAAAACTTGATAGTATTAAAAGACTAGGCTTTGGGTTGTTGAACAAGGTTGCAATGTTGTTTCCTCATGTTTTCTGGAGCACTGACCTTGATACCTTTGGACACCTGACTGAAGACCCAAGTCATCGTGGAGAGTTCTTTCTGTTCTATAGTTATGCAACAGTGGCCGGTGGTCCATTGCTGATGGCACTGGTTGCTGGTGAAGCTGCCCACAACTTTGAAACCACACCCCCTACTGATGCTGTCAGTTCTGTTCTCAAGATACTGAGAGGTATCTATGAACCTCAAGGTATTGAGGTCCCAGATCCTCTGCAGAGTGTTTGTACTAGATGGGGCACAGACTCCTTCAGTCTAGGTTCGTATTCTCATGTTGCTGTTGGAGCATCTGGAGATGACTATGACATACTAGCTGAAAGTGTTGGAGATGGGCGGTTGTTTTTCGCTGGAGAGGCCACCACGAGACGTTATCCAGCAACAATGCATGGTGCTTTCATCAGTGGTCTGCGGGAGGCTGCAAATATCACTCTCCATGCCAATGCCCGAGCAGCAAAGAGCAAAGTTGAAAAAGGTCCATCAACAAATACACAGGCCTGTGCTGCTCTACTCATGGACTTGTTTAGGCAACCAGATTTGGAATTTGGCAGCTTCTCTGTCATTTTTGGTGGACAAGCTTCTGATCCAAAGTCCCCAGCCATTCTGAAGGTGGAACTAGGTGGCCCTAGAAAGAAAGGTGCAACTGAAGGGGGAAAGGCGGACCAGCACCACTCAAATAAATTGTTGTTTCAGCAACTCCAATCACATTTCAACCAGCAACAACAACTTTATGTCTACACATTACTATCACGACAGCAGGCTATGGAGCTAAGAGAGGTTAGAGGAGGTGATGAAATGAGGCTGCATTACCTCTGTGAAAAGCTTGGTGTGAAATTAGTTGGCAGGAAAGGTCTTGGTCCGGGGGCTGATGCTGTGATTGCATCCATTAAGGCAGAGCGGAACAGCAGTAGAACTAAAACTAGGCCCTCAAAATTAAAAATTGGAATCCCTAAATCTAAATCTTGA

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Protein seq

MSDQPPPYTPLPLLSSFPPNPYPDQTPDPASTPTLVLPNPAFPNKRKRTGFRRKLPSGSPAAPVAVAASPSAQPPPRASAADDIIVINREPTAEAVTALTAGFPADSLTDEEIEAGVVSDVGGIEQVNYILIRNHLLTRWRETFNSWLAKESFATLIPPHCDHLLNAAYSFLVSHGHINFGVAPAIKERIPKEPTRHNTVIVVGAGLAGLAAARQLVAFGFKVVVLEGRKRCGGRVYTKKMEGGGRSAAGDLGGSVLTGTFGNPLGIVAKQLGLPMHKIRDKCPLYRPDGSPVDPEVDKKVEGTFNKLLDKSSLLRASMGDVAMDVSLGAALETLRQTDGDLSTDQEMNLFNWHLANLEYANAGLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALAENVPIVYERTVHTIRYGGDGVQVVVNGGQVYEGDMALCTVPLGVLKNGGVKFVPELPQRKLDSIKRLGFGLLNKVAMLFPHVFWSTDLDTFGHLTEDPSHRGEFFLFYSYATVAGGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQSVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFISGLREAANITLHANARAAKSKVEKGPSTNTQACAALLMDLFRQPDLEFGSFSVIFGGQASDPKSPAILKVELGGPRKKGATEGGKADQHHSNKLLFQQLQSHFNQQQQLYVYTLLSRQQAMELREVRGGDEMRLHYLCEKLGVKLVGRKGLGPGADAVIASIKAERNSSRTKTRPSKLKIGIPKSKS

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.838023 0.548727 0.470872

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0560300 RBH 1.251890 0.809690 1.932250
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db Os04g0560300 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0022830 RBH 0.320047 4.414949 3.334959
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0023560 RBH 0.120199 0.242846 0.983296
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0023280 RBH 0.943938 2.976583 3.292224
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0023040 RBH 0.143253 0.108715 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0023170 RBH 5.471848 1.221470 7.763524
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0440600 RBH 4.504318 5.9216735 7.591991
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0022010 RBH 0.182260 0.164723 0.665009
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0444200 RBH 3.8531055 5.2184625 10.413506
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0022500 RBH 0.056782 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0022330 RBH 0.722921 3.623585 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0022450 RBH 1.658380 6.667635 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0022830 RBH 0.241702 0.000000 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0023040 RBH 0.124674 3.484513 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G022250 RBH 0.107104 0.303798 0.850831
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0022170 RBH 0.972145 7.929204 3.485603
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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