Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0005540 | OGI:04044150 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:8728174-8728725 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaagatcacaataaacttttggtaaaagttctgtcttggtcggagtggggatagcatttctcttctgcatatctatggagttttgcaaaacccaaacacctcagagatagatatagaggtaggaatttgtcgaacgaaccacactccttcgtagacgtcaggagtccattgatgaaaaggggctggggaaagcttgaacccaagtcctacagtgatggatataagcgcaattgaaattcctggggagttatacatttgtgtattgataagaccgttcacaatttcttgaagctcgatctcccccccagatgaaccatatagccaagagaaaccatgaaccagaatagaagagcttgccccacccatgagtaaatatttcatagtagcctcattagaccgtagatctctcttggtatatccagacaataggtaggaacataaactgaaacattctggagctacaaagatagttattaaatcgttagcaccacataaaaacattccccctagagtagctgttaatacgaataacagaaactctgttatagccat
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| CDS seq | atggctataacagagtttctgttattcgtattaacagctactctagggggaatgtttttatgtggtgctaacgatttaataactatctttgtagctccagaatgtttcagtttatgttcctacctattgtctggatataccaagagagatctacggtctaatgaggctactatgaaatatttactcatgggtggggcaagctcttctattctggttcatggtttctcttggctatatggttcatctgggggggagatcgagcttcaagaaattgtgaacggtcttatcaatacacaaatgtataactccccaggaatttcaattgcgcttatatccatcactgtaggacttgggttcaagctttccccagccccttttcatcaatggactcctgacgtctacgaaggagtgtggttcgttcgacaaattcctacctctatatctatctctgaggtgtttgggttttgcaaaactccatag
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| Protein seq | MAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGISIALISITVGLGFKLSPAPFHQWTPDVYEGVWFVRQIPTSISISEVFGFCKTP |
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| Function | NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic [UniProtKB/Swiss-Prot:P0CC48] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0005540 | OsCMeo_04g0005540.01 | Chr04 | 8728174 | 8728725 | - | NAM | ||
| CDS seq | atggctataacagagtttctgttattcgtattaacagctactctagggggaatgtttttatgtggtgctaacgatttaataactatctttgtagctccagaatgtttcagtttatgttcctacctattgtctggatataccaagagagatctacggtctaatgaggctactatgaaatatttactcatgggtggggcaagctcttctattctggttcatggtttctcttggctatatggttcatctgggggggagatcgagcttcaagaaattgtgaacggtcttatcaatacacaaatgtataactccccaggaatttcaattgcgcttatatccatcactgtaggacttgggttcaagctttccccagccccttttcatcaatggactcctgacgtctacgaaggagtgtggttcgttcgacaaattcctacctctatatctatctctgaggtgtttgggttttgcaaaactccatag
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| Protein seq | MAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGISIALISITVGLGFKLSPAPFHQWTPDVYEGVWFVRQIPTSISISEVFGFCKTP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 39.930744 | 9.065855 | 36.908585 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0473025 | RBH | 1.737670 | 1.678752 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16742 | RBH | 31.744265 | 33.844490 | 7.651339 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0473025 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0002040 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0012010 | SBH | 6.275746 | 4.050710 | 12.788627 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0015510 | SBH | 41.615139 | 8.325105 | 43.702488 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011380 | SBH | 4.064092 | 0.481653 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0004900 | SBH | 181.892700 | 0.000000 | 90.216385 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0226800 | SBH | 990.169098 | 239.911247 | 131.895042 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0005040 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0227200 | SBH | 681.4729615 | 126.2577975 | 70.1163715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004600 | RBH | 48.421646 | 2.204248 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0004900 | SBH | 6.174168 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0004900 | SBH | 155.795624 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019680 | SBH | 30.666330 | 0.0 | 14.727195 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0004810 | SBH | 4.161678 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026010 | SBH | 59.057129 | 19.163862 | 71.935638 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004690 | SBH | 583.834290 | 405.108185 | 720.377991 |
