Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0004660 | OGI:04024640 | 3/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:7075145-7075475 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctacttcgccttcgccttggctttcccttcaccgcgcctatacgggtggtccacacatttcatagctatccctcttattacggggtgtttacctagtcaacactttgatccggctctacctaaattttttttttcacccgaacacattaccaacttgtataactattgccaagcagtttcaggataccaaacggatcttcctaggtggtattcaagtggccgatttaccttcttttgcaatcagtttcgctaaagcaactgctgctctagctaattgcctaccctttccatgtgtgatttctatgttatgtatggccgtgcctaaaggcat |
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| CDS seq | atgcctttaggcacggccatacataacatagaaatcacacatggaaagggtaggcaattagctagagcagcagttgctttagcgaaactgattgcaaaagaaggtaaacaccccgtaataagagggatagctatgaaatgtgtggaccacccgtataggcgcggtgaagggaaagccaaggcgaaggcgaagtag |
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| Protein seq | MPLGTAIHNIEITHGKGRQLARAAVALAKLIAKEGKHPVIRGIAMKCVDHPYRRGEGKAKAKAK |
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| Function | 50S ribosomal protein L2, chloroplastic [UniProtKB/Swiss-Prot:Q06GT2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0004660 | OsCMeo_04g0004660.01 | Chr04 | 7075145 | 7075475 | - | NAM | ||
| CDS seq | atgcctttaggcacggccatacataacatagaaatcacacatggaaagggtaggcaattagctagagcagcagttgctttagcgaaactgattgcaaaagaaggtaaacaccccgtaataagagggatagctatgaaatgtgtggaccacccgtataggcgcggtgaagggaaagccaaggcgaaggcgaagtag |
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| Protein seq | MPLGTAIHNIEITHGKGRQLARAAVALAKLIAKEGKHPVIRGIAMKCVDHPYRRGEGKAKAKAK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g024339N | SBH | 15.584910 | 4.954243 | 18.439848 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004470 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0005120 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004680 | SBH | 274.266327 | 655.621033 | 981.887878 |
