Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsCMeo_03g0036180 OGI:03089740 | 16/16 CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) Chr03:33559519-33564612
Gene Symbol OsI-BAK1, I-BAK1, RLCK117, OsRLCK117
DNA seq

tatcacacacaatcccccttgtggccttgtgtgtagtgttctcaaaaccatagcaaacttgcaaaatacccccacctttccccttccctcctcccctcactccctctcactctcttgtctccactctcctctcctctcctcgccgcgagcgtgagctctcccctctcctctcttccaatccaagaagccaagaaaccccaatgcatctccgcctcctcctcctcctcgtcggcgtcgccgccgcggcggcggacgccgacgccgacgccgacgcgctgctggcggcgaaggccgccatgtcggacccgaccggcgcgctggcgtcgtggggcggcaacgggaccaggacgaacaccaccgccgccgccgcggcacactgcgcgtgggcgggcgtgacgtgcagctcccgcggcgcggtggttggcctcgacgtgtccgggctcaacctctccggcgcgctgccggcggagctgaccgggctccgcgggctcatgcggctgtccgtcggcgccaatgccttctccggccccatcccggcgtcgttggggcggctccagttcctcacctacctcaacctctccaacaacgcgttcaatggctccttcccggcggcgctcgcgcgcctccgggggctccgggtgctcgacctctacaacaacaacctcaccagcccgctccccatggaggtggtgcagatgccgctgctccgccacctgcacctcggcggcaacttcttctccggtgagatcccgccggagtacgggcggtggggccggatgcagtatctcgccgtctccgggaacgagctctccggcaaaatcccgccggagttggggaatctgacgagcctcagggagctgtacattggttactacaacagctactccggtgggctcccaccggagttggggaacctgaccgagctcgtccgcctcgacgccgccaactgcgggctctccggcgagataccgccggagctcgggaagctgcagaacctcgacacgctgttcttgcaggtgaacagcctcgccggcggcataccgtcggagctgggttacctcaagagcctgagttctttggacctatcgaacaatgtcctcaccggcgagattccggcgagcttctccgagctcaagaacctgacgctgctcaacctgttccggaacaagctgcgtggtgacatccctgatttcgtcggcgacctgcccagcctcgaggtgctgcagctctgggagaacaacttcaccggcggcgtgccgcgccgcctcggccgcaatggccgcctccagctgctcgacctctcgtcgaacaggctcaccggcacgctgccgccggagctctgcgccggtggcaagatgcacacgctcatcgcgcttggcaacttcttgttcggcgccatcccggactcccttggtgaatgcaagtccttgagccgtgttcgtcttggggagaactacttgaacggctcaattccgaagggtctctttgagctgccgaagctgacgcaggttgagctgcaagataacctcctcacaggcaatttcccggccgtgtccggcgctgcggcgcctaatcttggggagatcagcctgtccaacaaccagctcactggtgcgctgccggcatcaattggaaacttttctggtgttcagaagctgcttcttgatcggaattcattctctggtgtcgttccacctgagattgggcgactgcagaaactctccaaggctgaccttagcagcaatgcgcttgagggaggtgtaccaccggagattgggaaatgccggttgctcacttacttggacttgagccggaacaacatctctgggaagatacctccggccatctctggaatgaggatactcaactatctcaacctgtcccggaaccatcttgatggagagatacctccatccattgcaacaatgcagagcttgaccgcggttgacttctcatataacaacttgtctgggcttgtgccaggaactggtcaattcagctacttcaatgccacatcttttgttggtaacccaggcttgtgtggaccgtacctcggaccatgccgccctggtgttgctggcaccgaccatggtggtcatggtcatggcgggctatccaatggtgtcaaactgctcattgtcctaggcttgttggcctgctccattgcatttgctgtcggggcgattctgaaggctcggtcgttgaagaaagccagtgaggcacgtgtgtggaaactcacagcattccagcgcctcgacttcacctgtgatgatgtgcttgactgcttgaaggaagaaaacgttatcggcaaaggtggtgctggaattgtgtacaagggggctatgcctaacggagatcatgttgctgtgaagcgtctcccagctatgggccgtggctcttcacatgatcatggtttttcagcagagatacagacacttgggagaattcggcaccgccatattgtgcgtttgctaggcttctgctcaaacaatgagactaatttgctggtttatgaatacatgcccaatggaagcctgggggagctgctccatggcaagaaaggcgggcaccttcactgggacacccggtacaagatcgccattgaagctgcaaaggggctctgctaccttcaccatgattgttcccctttgatacttcaccgtgatgtcaagtcaaacaatatccttcttgactcagactttgaagcacatgtggctgactttggccttgcaaagttcttgcaggacaccggtgcatctgagtgcatgtctgccattgctggctcttatggatacattgctccaggtaaaacatcatatctcatggtatttcagttcgttctgcagtgtattgatagtattgtatttagttgcaaagtaatatttcctctggtaaaagaaatgtaagagtaattcttgaattgctgtttttagttcctcgtgctccttcatgaattgtgttgcttaataatctgacatgtctttgttcacttcaaatggactgaaccttgttggattgtatttttgtggatgtccagaatatgcatacaccctcaaggtcgatgagaagagtgatgtctacagctttggtgttgtgcttcttgagctggttactggacggaagcctgttggggagtttggagatggcgttgacatcgtccaatgggtgaggatgatgaccgactcaaacaaggaacaagtgatgaaggtcctggacccaaggctctcaacagttccacttcatgaggtcatgcacgtcttctatgtcgctttgctctgcattgaggagcagagcgtgcagcgtccaacaatgcgggaggttgtacagatcctcagcgagcttccaaagctagctcccaggcaaggagaagtgctttcacacgctgtcgatggttttgcatccaatcctccagctccagttccttctgggtctgcagaagcactaactggtgatgcgaaagatcaacagcagcagcaaacaaattcagagtcaactacacctcctgatctcatcagcatatgagtaaccaagtctaaaattgctgtcaaccttttgttgcaaagttcgcaagcttcagtatcggaaacttatctaggtatggatttaggtcttggtaagtttttaggtgttctgtgctgtacatattccagtttggtgggttgtcctgttaccagtttgtttcctttggtgctgcaatgtaggattccgtagcgagtttcggtactttagagccttttatcatccatcttcaatgtaggcaatggctttctatccaatttagaatcaaaatctaagctttactgtggaaccaagtttcctttaaagcacttcctgagttcctggtcctgtgtaaacagttcaagttgggtcctttaaattgagaaacccatactagaatgccatcatggaaaagcacccttgcatggtgaacagatatgcactaaatcaagcaaagtcaaagtattctgctctttttattcttttggagctgaatgaaatcaaagaatcagagtgcttcttcctttgttctcttttgtgatgtgtatagaaagctggcacaagaatggttaacaaatgattacccttttgtggctgctttgcataacatgaagtgcactattgcaacatcagattatgtgggatcagcatatatgggggagagaagaactgtgctaaaaatccacgctttctaatgtccaaaaatttttgttagcctgtttggaacaaatatttactataatctttttgcatattgaaatctggagtagtgaaataaattctgttaggaaaatcgctcaaattccatttaaaaaaatgcaaaatgaaatctggagattgacattcagagatcaagactctcccgagcatgactgccaagtgctggagatagtgctgcgtgaggtccatcacatgatgatgcctctctgctcccctactacaatcattcagcaccagtgcctaacctttttgaagtttctctcctgttcttgaatctagagacatttttgttgttaatccagagatataatatacctatcgaacaccacgaggtacttatattcgaatattggttcttctaaaccttttcttcttcaaatattggattgtcttgttccgaaatgaaaatcccgaaaaatcctcgcaaaagtcggtttgctcgtgaaggaatggacatggtcggctgtacctatagatttcattgtgcgattggtgataatgctaggaggcgaaaggaccatcagatcagatcagatcagatcagaaggagagtgcgacggtattgaattctgacgctgcactgctgccgtttattcggtgcagttcgatgcgtccaacagaatggtcacatcggcaacgagacgaaacagcaaatgttgcacacagtggcaacgccatgtattcacacatgcacaaatcctctagtaattactcctatcactcaagagtattaatgtattgttgctctcaactatctatttaagcaggtaaattcagtttatctgcatgtaatgtaaagtaaaagttcaggagcttacattctgtcaccagctattttgcaggaggaggtgcttctgtttctctatctgtatctgc

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CDS seq

atgcatctccgcctcctcctcctcctcgtcggcgtcgccgccgcggcggcggacgccgacgccgacgccgacgcgctgctggcggcgaaggccgccatgtcggacccgaccggcgcgctggcgtcgtggggcggcaacgggaccaggacgaacaccaccgccgccgccgcggcacactgcgcgtgggcgggcgtgacgtgcagctcccgcggcgcggtggttggcctcgacgtgtccgggctcaacctctccggcgcgctgccggcggagctgaccgggctccgcgggctcatgcggctgtccgtcggcgccaatgccttctccggccccatcccggcgtcgttggggcggctccagttcctcacctacctcaacctctccaacaacgcgttcaatggctccttcccggcggcgctcgcgcgcctccgggggctccgggtgctcgacctctacaacaacaacctcaccagcccgctccccatggaggtggtgcagatgccgctgctccgccacctgcacctcggcggcaacttcttctccggtgagatcccgccggagtacgggcggtggggccggatgcagtatctcgccgtctccgggaacgagctctccggcaaaatcccgccggagttggggaatctgacgagcctcagggagctgtacattggttactacaacagctactccggtgggctcccaccggagttggggaacctgaccgagctcgtccgcctcgacgccgccaactgcgggctctccggcgagataccgccggagctcgggaagctgcagaacctcgacacgctgttcttgcaggtgaacagcctcgccggcggcataccgtcggagctgggttacctcaagagcctgagttctttggacctatcgaacaatgtcctcaccggcgagattccggcgagcttctccgagctcaagaacctgacgctgctcaacctgttccggaacaagctgcgtggtgacatccctgatttcgtcggcgacctgcccagcctcgaggtgctgcagctctgggagaacaacttcaccggcggcgtgccgcgccgcctcggccgcaatggccgcctccagctgctcgacctctcgtcgaacaggctcaccggcacgctgccgccggagctctgcgccggtggcaagatgcacacgctcatcgcgcttggcaacttcttgttcggcgccatcccggactcccttggtgaatgcaagtccttgagccgtgttcgtcttggggagaactacttgaacggctcaattccgaagggtctctttgagctgccgaagctgacgcaggttgagctgcaagataacctcctcacaggcaatttcccggccgtgtccggcgctgcggcgcctaatcttggggagatcagcctgtccaacaaccagctcactggtgcgctgccggcatcaattggaaacttttctggtgttcagaagctgcttcttgatcggaattcattctctggtgtcgttccacctgagattgggcgactgcagaaactctccaaggctgaccttagcagcaatgcgcttgagggaggtgtaccaccggagattgggaaatgccggttgctcacttacttggacttgagccggaacaacatctctgggaagatacctccggccatctctggaatgaggatactcaactatctcaacctgtcccggaaccatcttgatggagagatacctccatccattgcaacaatgcagagcttgaccgcggttgacttctcatataacaacttgtctgggcttgtgccaggaactggtcaattcagctacttcaatgccacatcttttgttggtaacccaggcttgtgtggaccgtacctcggaccatgccgccctggtgttgctggcaccgaccatggtggtcatggtcatggcgggctatccaatggtgtcaaactgctcattgtcctaggcttgttggcctgctccattgcatttgctgtcggggcgattctgaaggctcggtcgttgaagaaagccagtgaggcacgtgtgtggaaactcacagcattccagcgcctcgacttcacctgtgatgatgtgcttgactgcttgaaggaagaaaacgttatcggcaaaggtggtgctggaattgtgtacaagggggctatgcctaacggagatcatgttgctgtgaagcgtctcccagctatgggccgtggctcttcacatgatcatggtttttcagcagagatacagacacttgggagaattcggcaccgccatattgtgcgtttgctaggcttctgctcaaacaatgagactaatttgctggtttatgaatacatgcccaatggaagcctgggggagctgctccatggcaagaaaggcgggcaccttcactgggacacccggtacaagatcgccattgaagctgcaaaggggctctgctaccttcaccatgattgttcccctttgatacttcaccgtgatgtcaagtcaaacaatatccttcttgactcagactttgaagcacatgtggctgactttggccttgcaaagttcttgcaggacaccggtgcatctgagtgcatgtctgccattgctggctcttatggatacattgctccagaatatgcatacaccctcaaggtcgatgagaagagtgatgtctacagctttggtgttgtgcttcttgagctggttactggacggaagcctgttggggagtttggagatggcgttgacatcgtccaatgggtgaggatgatgaccgactcaaacaaggaacaagtgatgaaggtcctggacccaaggctctcaacagttccacttcatgaggtcatgcacgtcttctatgtcgctttgctctgcattgaggagcagagcgtgcagcgtccaacaatgcgggaggttgtacagatcctcagcgagcttccaaagctagctcccaggcaaggagaagtgctttcacacgctgtcgatggttttgcatccaatcctccagctccagttccttctgggtctgcagaagcactaactggtgatgcgaaagatcaacagcagcagcaaacaaattcagagtcaactacacctcctgatctcatcagcatatga

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Protein seq

MHLRLLLLLVGVAAAAADADADADALLAAKAAMSDPTGALASWGGNGTRTNTTAAAAAHCAWAGVTCSSRGAVVGLDVSGLNLSGALPAELTGLRGLMRLSVGANAFSGPIPASLGRLQFLTYLNLSNNAFNGSFPAALARLRGLRVLDLYNNNLTSPLPMEVVQMPLLRHLHLGGNFFSGEIPPEYGRWGRMQYLAVSGNELSGKIPPELGNLTSLRELYIGYYNSYSGGLPPELGNLTELVRLDAANCGLSGEIPPELGKLQNLDTLFLQVNSLAGGIPSELGYLKSLSSLDLSNNVLTGEIPASFSELKNLTLLNLFRNKLRGDIPDFVGDLPSLEVLQLWENNFTGGVPRRLGRNGRLQLLDLSSNRLTGTLPPELCAGGKMHTLIALGNFLFGAIPDSLGECKSLSRVRLGENYLNGSIPKGLFELPKLTQVELQDNLLTGNFPAVSGAAAPNLGEISLSNNQLTGALPASIGNFSGVQKLLLDRNSFSGVVPPEIGRLQKLSKADLSSNALEGGVPPEIGKCRLLTYLDLSRNNISGKIPPAISGMRILNYLNLSRNHLDGEIPPSIATMQSLTAVDFSYNNLSGLVPGTGQFSYFNATSFVGNPGLCGPYLGPCRPGVAGTDHGGHGHGGLSNGVKLLIVLGLLACSIAFAVGAILKARSLKKASEARVWKLTAFQRLDFTCDDVLDCLKEENVIGKGGAGIVYKGAMPNGDHVAVKRLPAMGRGSSHDHGFSAEIQTLGRIRHRHIVRLLGFCSNNETNLLVYEYMPNGSLGELLHGKKGGHLHWDTRYKIAIEAAKGLCYLHHDCSPLILHRDVKSNNILLDSDFEAHVADFGLAKFLQDTGASECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRMMTDSNKEQVMKVLDPRLSTVPLHEVMHVFYVALLCIEEQSVQRPTMREVVQILSELPKLAPRQGEVLSHAVDGFASNPPAPVPSGSAEALTGDAKDQQQQQTNSESTTPPDLISI

Function Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [UniProtKB/Swiss-Prot:O49545]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsCMeo_03g0036180 OsCMeo_03g0036180.02 Chr03 33559519 33563465 + NAM
CDS seq

atgcatctccgcctcctcctcctcctcgtcggcgtcgccgccgcggcggcggacgccgacgccgacgccgacgcgctgctggcggcgaaggccgccatgtcggacccgaccggcgcgctggcgtcgtggggcggcaacgggaccaggacgaacaccaccgccgccgccgcggcacactgcgcgtgggcgggcgtgacgtgcagctcccgcggcgcggtggttggcctcgacgtgtccgggctcaacctctccggcgcgctgccggcggagctgaccgggctccgcgggctcatgcggctgtccgtcggcgccaatgccttctccggccccatcccggcgtcgttggggcggctccagttcctcacctacctcaacctctccaacaacgcgttcaatggctccttcccggcggcgctcgcgcgcctccgggggctccgggtgctcgacctctacaacaacaacctcaccagcccgctccccatggaggtggtgcagatgccgctgctccgccacctgcacctcggcggcaacttcttctccggtgagatcccgccggagtacgggcggtggggccggatgcagtatctcgccgtctccgggaacgagctctccggcaaaatcccgccggagttggggaatctgacgagcctcagggagctgtacattggttactacaacagctactccggtgggctcccaccggagttggggaacctgaccgagctcgtccgcctcgacgccgccaactgcgggctctccggcgagataccgccggagctcgggaagctgcagaacctcgacacgctgttcttgcaggtgaacagcctcgccggcggcataccgtcggagctgggttacctcaagagcctgagttctttggacctatcgaacaatgtcctcaccggcgagattccggcgagcttctccgagctcaagaacctgacgctgctcaacctgttccggaacaagctgcgtggtgacatccctgatttcgtcggcgacctgcccagcctcgaggtgctgcagctctgggagaacaacttcaccggcggcgtgccgcgccgcctcggccgcaatggccgcctccagctgctcgacctctcgtcgaacaggctcaccggcacgctgccgccggagctctgcgccggtggcaagatgcacacgctcatcgcgcttggcaacttcttgttcggcgccatcccggactcccttggtgaatgcaagtccttgagccgtgttcgtcttggggagaactacttgaacggctcaattccgaagggtctctttgagctgccgaagctgacgcaggttgagctgcaagataacctcctcacaggcaatttcccggccgtgtccggcgctgcggcgcctaatcttggggagatcagcctgtccaacaaccagctcactggtgcgctgccggcatcaattggaaacttttctggtgttcagaagctgcttcttgatcggaattcattctctggtgtcgttccacctgagattgggcgactgcagaaactctccaaggctgaccttagcagcaatgcgcttgagggaggtgtaccaccggagattgggaaatgccggttgctcacttacttggacttgagccggaacaacatctctgggaagatacctccggccatctctggaatgaggatactcaactatctcaacctgtcccggaaccatcttgatggagagatacctccatccattgcaacaatgcagagcttgaccgcggttgacttctcatataacaacttgtctgggcttgtgccaggaactggtcaattcagctacttcaatgccacatcttttgttggtaacccaggcttgtgtggaccgtacctcggaccatgccgccctggtgttgctggcaccgaccatggtggtcatggtcatggcgggctatccaatggtgtcaaactgctcattgtcctaggcttgttggcctgctccattgcatttgctgtcggggcgattctgaaggctcggtcgttgaagaaagccagtgaggcacgtgtgtggaaactcacagcattccagcgcctcgacttcacctgtgatgatgtgcttgactgcttgaaggaagaaaacgttatcggcaaaggtggtgctggaattgtgtacaagggggctatgcctaacggagatcatgttgctgtgaagcgtctcccagctatgggccgtggctcttcacatgatcatggtttttcagcagagatacagacacttgggagaattcggcaccgccatattgtgcgtttgctaggcttctgctcaaacaatgagactaatttgctggtttatgaatacatgcccaatggaagcctgggggagctgctccatggcaagaaaggacaccggtgcatctga

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Protein seq

MHLRLLLLLVGVAAAAADADADADALLAAKAAMSDPTGALASWGGNGTRTNTTAAAAAHCAWAGVTCSSRGAVVGLDVSGLNLSGALPAELTGLRGLMRLSVGANAFSGPIPASLGRLQFLTYLNLSNNAFNGSFPAALARLRGLRVLDLYNNNLTSPLPMEVVQMPLLRHLHLGGNFFSGEIPPEYGRWGRMQYLAVSGNELSGKIPPELGNLTSLRELYIGYYNSYSGGLPPELGNLTELVRLDAANCGLSGEIPPELGKLQNLDTLFLQVNSLAGGIPSELGYLKSLSSLDLSNNVLTGEIPASFSELKNLTLLNLFRNKLRGDIPDFVGDLPSLEVLQLWENNFTGGVPRRLGRNGRLQLLDLSSNRLTGTLPPELCAGGKMHTLIALGNFLFGAIPDSLGECKSLSRVRLGENYLNGSIPKGLFELPKLTQVELQDNLLTGNFPAVSGAAAPNLGEISLSNNQLTGALPASIGNFSGVQKLLLDRNSFSGVVPPEIGRLQKLSKADLSSNALEGGVPPEIGKCRLLTYLDLSRNNISGKIPPAISGMRILNYLNLSRNHLDGEIPPSIATMQSLTAVDFSYNNLSGLVPGTGQFSYFNATSFVGNPGLCGPYLGPCRPGVAGTDHGGHGHGGLSNGVKLLIVLGLLACSIAFAVGAILKARSLKKASEARVWKLTAFQRLDFTCDDVLDCLKEENVIGKGGAGIVYKGAMPNGDHVAVKRLPAMGRGSSHDHGFSAEIQTLGRIRHRHIVRLLGFCSNNETNLLVYEYMPNGSLGELLHGKKGHRCI

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Gene Transcript Chromosome Start End Strand Source
OsCMeo_03g0036180 OsCMeo_03g0036180.03 Chr03 33559519 33563465 + NAM
CDS seq

atgcatctccgcctcctcctcctcctcgtcggcgtcgccgccgcggcggcggacgccgacgccgacgccgacgcgctgctggcggcgaaggccgccatgtcggacccgaccggcgcgctggcgtcgtggggcggcaacgggaccaggacgaacaccaccgccgccgccgcggcacactgcgcgtgggcgggcgtgacgtgcagctcccgcggcgcggtggttggcctcgacgtgtccgggctcaacctctccggcgcgctgccggcggagctgaccgggctccgcgggctcatgcggctgtccgtcggcgccaatgccttctccggccccatcccggcgtcgttggggcggctccagttcctcacctacctcaacctctccaacaacgcgttcaatggctccttcccggcggcgctcgcgcgcctccgggggctccgggtgctcgacctctacaacaacaacctcaccagcccgctccccatggaggtggtgcagatgccgctgctccgccacctgcacctcggcggcaacttcttctccggtgagatcccgccggagtacgggcggtggggccggatgcagtatctcgccgtctccgggaacgagctctccggcaaaatcccgccggagttggggaatctgacgagcctcagggagctgtacattggttactacaacagctactccggtgggctcccaccggagttggggaacctgaccgagctcgtccgcctcgacgccgccaactgcgggctctccggcgagataccgccggagctcgggaagctgcagaacctcgacacgctgttcttgcaggtgaacagcctcgccggcggcataccgtcggagctgggttacctcaagagcctgagttctttggacctatcgaacaatgtcctcaccggcgagattccggcgagcttctccgagctcaagaacctgacgctgctcaacctgttccggaacaagctgcgtggtgacatccctgatttcgtcggcgacctgcccagcctcgaggtgctgcagctctgggagaacaacttcaccggcggcgtgccgcgccgcctcggccgcaatggccgcctccagctgctcgacctctcgtcgaacaggctcaccggcacgctgccgccggagctctgcgccggtggcaagatgcacacgctcatcgcgcttggcaacttcttgttcggcgccatcccggactcccttggtgaatgcaagtccttgagccgtgttcgtcttggggagaactacttgaacggctcaattccgaagggtctctttgagctgccgaagctgacgcaggttgagctgcaagataacctcctcacaggcaatttcccggccgtgtccggcgctgcggcgcctaatcttggggagatcagcctgtccaacaaccagctcactggtgcgctgccggcatcaattggaaacttttctggtgttcagaagctgcttcttgatcggaattcattctctggtgtcgttccacctgagattgggcgactgcagaaactctccaaggctgaccttagcagcaatgcgcttgagggaggtgtaccaccggagattgggaaatgccggttgctcacttacttggacttgagccggaacaacatctctgggaagatacctccggccatctctggaatgaggatactcaactatctcaacctgtcccggaaccatcttgatggagagatacctccatccattgcaacaatgcagagcttgaccgcggttgacttctcatataacaacttgtctgggcttgtgccaggaactggtcaattcagctacttcaatgccacatcttttgttggtaacccaggcttgtgtggaccgtacctcggaccatgccgccctggtgttgctggcaccgaccatggtggtcatggtcatggcgggctatccaatggtgtcaaactgctcattgtcctaggcttgttggcctgctccattgcatttgctgtcggggcgattctgaaggctcggtcgttgaagaaagccagtgaggcacgtgtgtggaaactcacagcattccagcgcctcgacttcacctgtgatgatgtgcttgactgcttgaaggaagaaaacgttatcggcaaaggtggtgctggaattgtgtacaagggggctatgcctaacggagatcatgttgctgtgaagcgtctcccagctatgggccgtggctcttcacatgatcatggtttttcagcagagatacagacacttgggagaattcggcaccgccatattgtgcgtttgctaggcttctgctcaaacaatgagactaatttgctggtttatgaatacatgcccaatggaagcctgggggagctgctccatggcaagaaaggcgggcaccttcactgggacacccggtacaagatcgccattgaagctgcaaaggggctctgctaccttcaccatgattgttcccctttgatacttcaccgtgatgtcaagtcaaacaatatccttcttgactcagactttgaagcacatgtggctgactttggccttgcaaagttcttgcaggacaccggtgcatctgagtgcatgtctgccattgctggctcttatggatacattgctccagaatatgcatacaccctcaaggtcgatgagaagagtgatgtctacagctttggtgttgtgcttcttgagctggttactggacggaagcctgttggggagtttggagatggcgttgacatcgtccaatgggtgaggatgatgaccgactcaaacaaggaacaagtgatgaaggtcctggacccaaggctctcaacagttccacttcatgaggtcatgcacgtcttctatgtcgctttgctctgcattgaggagcagagcgtgcagcgtccaacaatgcgggaggttgtacagatcctcagcgagcttccaaagctagctcccaggcaaggagaagtgctttcacacgctgtcgatggttttgcatccaatcctccagctccagttccttctgggtctgcagaagcactaactggtgatgcgaaagatcaacagcagcagcaaacaaattcagagtcaactacacctcctgatctcatcagcatatga

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Protein seq

MHLRLLLLLVGVAAAAADADADADALLAAKAAMSDPTGALASWGGNGTRTNTTAAAAAHCAWAGVTCSSRGAVVGLDVSGLNLSGALPAELTGLRGLMRLSVGANAFSGPIPASLGRLQFLTYLNLSNNAFNGSFPAALARLRGLRVLDLYNNNLTSPLPMEVVQMPLLRHLHLGGNFFSGEIPPEYGRWGRMQYLAVSGNELSGKIPPELGNLTSLRELYIGYYNSYSGGLPPELGNLTELVRLDAANCGLSGEIPPELGKLQNLDTLFLQVNSLAGGIPSELGYLKSLSSLDLSNNVLTGEIPASFSELKNLTLLNLFRNKLRGDIPDFVGDLPSLEVLQLWENNFTGGVPRRLGRNGRLQLLDLSSNRLTGTLPPELCAGGKMHTLIALGNFLFGAIPDSLGECKSLSRVRLGENYLNGSIPKGLFELPKLTQVELQDNLLTGNFPAVSGAAAPNLGEISLSNNQLTGALPASIGNFSGVQKLLLDRNSFSGVVPPEIGRLQKLSKADLSSNALEGGVPPEIGKCRLLTYLDLSRNNISGKIPPAISGMRILNYLNLSRNHLDGEIPPSIATMQSLTAVDFSYNNLSGLVPGTGQFSYFNATSFVGNPGLCGPYLGPCRPGVAGTDHGGHGHGGLSNGVKLLIVLGLLACSIAFAVGAILKARSLKKASEARVWKLTAFQRLDFTCDDVLDCLKEENVIGKGGAGIVYKGAMPNGDHVAVKRLPAMGRGSSHDHGFSAEIQTLGRIRHRHIVRLLGFCSNNETNLLVYEYMPNGSLGELLHGKKGGHLHWDTRYKIAIEAAKGLCYLHHDCSPLILHRDVKSNNILLDSDFEAHVADFGLAKFLQDTGASECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRMMTDSNKEQVMKVLDPRLSTVPLHEVMHVFYVALLCIEEQSVQRPTMREVVQILSELPKLAPRQGEVLSHAVDGFASNPPAPVPSGSAEALTGDAKDQQQQQTNSESTTPPDLISI

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Gene Transcript Chromosome Start End Strand Source
OsCMeo_03g0036180 OsCMeo_03g0036180.01 Chr03 33559519 33564612 + NAM
CDS seq

atgcatctccgcctcctcctcctcctcgtcggcgtcgccgccgcggcggcggacgccgacgccgacgccgacgcgctgctggcggcgaaggccgccatgtcggacccgaccggcgcgctggcgtcgtggggcggcaacgggaccaggacgaacaccaccgccgccgccgcggcacactgcgcgtgggcgggcgtgacgtgcagctcccgcggcgcggtggttggcctcgacgtgtccgggctcaacctctccggcgcgctgccggcggagctgaccgggctccgcgggctcatgcggctgtccgtcggcgccaatgccttctccggccccatcccggcgtcgttggggcggctccagttcctcacctacctcaacctctccaacaacgcgttcaatggctccttcccggcggcgctcgcgcgcctccgggggctccgggtgctcgacctctacaacaacaacctcaccagcccgctccccatggaggtggtgcagatgccgctgctccgccacctgcacctcggcggcaacttcttctccggtgagatcccgccggagtacgggcggtggggccggatgcagtatctcgccgtctccgggaacgagctctccggcaaaatcccgccggagttggggaatctgacgagcctcagggagctgtacattggttactacaacagctactccggtgggctcccaccggagttggggaacctgaccgagctcgtccgcctcgacgccgccaactgcgggctctccggcgagataccgccggagctcgggaagctgcagaacctcgacacgctgttcttgcaggtgaacagcctcgccggcggcataccgtcggagctgggttacctcaagagcctgagttctttggacctatcgaacaatgtcctcaccggcgagattccggcgagcttctccgagctcaagaacctgacgctgctcaacctgttccggaacaagctgcgtggtgacatccctgatttcgtcggcgacctgcccagcctcgaggtgctgcagctctgggagaacaacttcaccggcggcgtgccgcgccgcctcggccgcaatggccgcctccagctgctcgacctctcgtcgaacaggctcaccggcacgctgccgccggagctctgcgccggtggcaagatgcacacgctcatcgcgcttggcaacttcttgttcggcgccatcccggactcccttggtgaatgcaagtccttgagccgtgttcgtcttggggagaactacttgaacggctcaattccgaagggtctctttgagctgccgaagctgacgcaggttgagctgcaagataacctcctcacaggcaatttcccggccgtgtccggcgctgcggcgcctaatcttggggagatcagcctgtccaacaaccagctcactggtgcgctgccggcatcaattggaaacttttctggtgttcagaagctgcttcttgatcggaattcattctctggtgtcgttccacctgagattgggcgactgcagaaactctccaaggctgaccttagcagcaatgcgcttgagggaggtgtaccaccggagattgggaaatgccggttgctcacttacttggacttgagccggaacaacatctctgggaagatacctccggccatctctggaatgaggatactcaactatctcaacctgtcccggaaccatcttgatggagagatacctccatccattgcaacaatgcagagcttgaccgcggttgacttctcatataacaacttgtctgggcttgtgccaggaactggtcaattcagctacttcaatgccacatcttttgttggtaacccaggcttgtgtggaccgtacctcggaccatgccgccctggtgttgctggcaccgaccatggtggtcatggtcatggcgggctatccaatggtgtcaaactgctcattgtcctaggcttgttggcctgctccattgcatttgctgtcggggcgattctgaaggctcggtcgttgaagaaagccagtgaggcacgtgtgtggaaactcacagcattccagcgcctcgacttcacctgtgatgatgtgcttgactgcttgaaggaagaaaacgttatcggcaaaggtggtgctggaattgtgtacaagggggctatgcctaacggagatcatgttgctgtgaagcgtctcccagctatgggccgtggctcttcacatgatcatggtttttcagcagagatacagacacttgggagaattcggcaccgccatattgtgcgtttgctaggcttctgctcaaacaatgagactaatttgctggtttatgaatacatgcccaatggaagcctgggggagctgctccatggcaagaaaggcgggcaccttcactgggacacccggtacaagatcgccattgaagctgcaaaggggctctgctaccttcaccatgattgttcccctttgatacttcaccgtgatgtcaagtcaaacaatatccttcttgactcagactttgaagcacatgtggctgactttggccttgcaaagttcttgcaggacaccggtgcatctgagtgcatgtctgccattgctggctcttatggatacattgctccagaatatgcatacaccctcaaggtcgatgagaagagtgatgtctacagctttggtgttgtgcttcttgagctggttactggacggaagcctgttggggagtttggagatggcgttgacatcgtccaatgggtgaggatgatgaccgactcaaacaaggaacaagtgatgaaggtcctggacccaaggctctcaacagttccacttcatgaggtcatgcacgtcttctatgtcgctttgctctgcattgaggagcagagcgtgcagcgtccaacaatgcgggaggttgtacagatcctcagcgagcttccaaagctagctcccaggcaaggagaagtgctttcacacgctgtcgatggttttgcatccaatcctccagctccagttccttctgggtctgcagaagcactaactggtgatgcgaaagatcaacagcagcagcaaacaaattcagagtcaactacacctcctgatctcatcagcatatga

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Protein seq

MHLRLLLLLVGVAAAAADADADADALLAAKAAMSDPTGALASWGGNGTRTNTTAAAAAHCAWAGVTCSSRGAVVGLDVSGLNLSGALPAELTGLRGLMRLSVGANAFSGPIPASLGRLQFLTYLNLSNNAFNGSFPAALARLRGLRVLDLYNNNLTSPLPMEVVQMPLLRHLHLGGNFFSGEIPPEYGRWGRMQYLAVSGNELSGKIPPELGNLTSLRELYIGYYNSYSGGLPPELGNLTELVRLDAANCGLSGEIPPELGKLQNLDTLFLQVNSLAGGIPSELGYLKSLSSLDLSNNVLTGEIPASFSELKNLTLLNLFRNKLRGDIPDFVGDLPSLEVLQLWENNFTGGVPRRLGRNGRLQLLDLSSNRLTGTLPPELCAGGKMHTLIALGNFLFGAIPDSLGECKSLSRVRLGENYLNGSIPKGLFELPKLTQVELQDNLLTGNFPAVSGAAAPNLGEISLSNNQLTGALPASIGNFSGVQKLLLDRNSFSGVVPPEIGRLQKLSKADLSSNALEGGVPPEIGKCRLLTYLDLSRNNISGKIPPAISGMRILNYLNLSRNHLDGEIPPSIATMQSLTAVDFSYNNLSGLVPGTGQFSYFNATSFVGNPGLCGPYLGPCRPGVAGTDHGGHGHGGLSNGVKLLIVLGLLACSIAFAVGAILKARSLKKASEARVWKLTAFQRLDFTCDDVLDCLKEENVIGKGGAGIVYKGAMPNGDHVAVKRLPAMGRGSSHDHGFSAEIQTLGRIRHRHIVRLLGFCSNNETNLLVYEYMPNGSLGELLHGKKGGHLHWDTRYKIAIEAAKGLCYLHHDCSPLILHRDVKSNNILLDSDFEAHVADFGLAKFLQDTGASECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRMMTDSNKEQVMKVLDPRLSTVPLHEVMHVFYVALLCIEEQSVQRPTMREVVQILSELPKLAPRQGEVLSHAVDGFASNPPAPVPSGSAEALTGDAKDQQQQQTNSESTTPPDLISI

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Gene Transcript Chromosome Start End Strand Source
OsCMeo_03g0036180 OsCMeo_03g0036180.04 Chr03 33559611 33563352 + IsoSeq
CDS seq

atgccttctccggccccatcccggcgtcgttggggcggctccagttcctcacctacctcaacctctccaacaacgcgttcaatggctccttcccggcggcgctcgcgcgcctccgggggctccgggtgctcgacctctacaacaacaacctcaccagcccgctccccatggaggtggtgcagatgccgctgctccgccacctgcacctcggcggcaacttcttctccggtgagatcccgccggagtacgggcggtggggccggatgcagtatctcgccgtctccgggaacgagctctccggcaaaatcccgccggagttgggga

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Protein seq

MPSPAPSRRRWGGSSSSPTSTSPTTRSMAPSRRRSRASGGSGCSTSTTTTSPARSPWRWCRCRCSATCTSAATSSPVRSRRSTGGGAGCSISPSPGTSSPAKSRRSWG

OsCMeo_03g0036180.04OsCMeo_03g0036180.03OsCMeo_03g0036180.02OsCMeo_03g0036180.01AS33559419 bp33560000 bp33561000 bp33562000 bp33563000 bp33564000 bp33565000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr03 33559519 33562323 + OsCMeo_03g0036180.03,OsCMeo_03g0036180.01 OsCMeo_03g0036180.03,OsCMeo_03g0036180.01,OsCMeo_03g0036180.02 All

Expression

Leaf Root Panicle
FPKM 0.468469 7.306810 12.225965

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0773700 RBH 1.888010 2.523304 7.656303
Nipponbare | IRGSP 1.0 | MSU LOC_Os03g56270 RBH 1.112832 1.595920 1.785307
Nipponbare | IRGSP 1.0 | RAP-db Os03g0773700 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_03g0036430 RBH 0.102413 19.743889 7.869714
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_03g0036100 RBH 0.344199 3.540817 3.784941
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_07g0001970 RBH 0.0 1.198956 8.447635
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_03g0036470 RBH 0.207560 0.214272 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_03g0035990 RBH 4.994367 13.709992 19.506165
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0546300 RBH 8.6944295 15.0202345 7.494631
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_03g0035790 RBH 0.748802 0.509844 2.075932
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0547000 RBH 11.175968 5.7560165 38.00548
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0036270 RBH 0.288780 0.091189 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0036290 RBH 0.589859 14.074357 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_03g0035940 RBH 6.457238 18.073820 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_03g0036030 RBH 1.715818 0.486649 1.084893
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0035980 RBH 1.090934 8.124420 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G035790 RBH 0.430857 4.001471 5.422032
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_03g0035570 RBH 5.977982 10.092898 7.156738
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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