Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0029250 | OGI:03075180 | 10/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:27873347-27876387 | ||||||||
| Gene Symbol | OsbHLH022 | ||||||||||
| DNA seq | atggcgaccaacagggatgagggcatgaccagcgggaaggagttaggtgacaaagacctcatgtcccttcgagcggcgacggtggatccgcccatcgcctttctcccctctccctcccggcatccttcctccctccccgagctccctggcttgccggtgagcgcacgtagagagagaaggacggcggccaatgaccggtggggagaagggcggcggacggcggccatgggggagaagagcgacgacgacctcatgttccctctccctccctacatccttctgcctcctcccctttccctcctggcatccttcctccctcctcgagttccctggcctaccggcgagcgcgcgcaagaaagagatggccggtggttggcggccggcggccgacggggagaagggtggcaggaagcggccatcggggagaagggcgacgaccttgtctcccttcaagtaacggcggtggagccgcctgccgctcttttccatctccgccgccgtcgtcaccgctggccgcatctggtgcccatccgcccccctctccggctctctgcgctcccaccgttgatgccctccccttttcccgcgtcgccgccgccaaacctccccgtgacctcatggcacctagagaaaagaagaggggagaggggagagaggggggggggggagggggggggggtgttgagaatgacatgtggggcccatgtgggccacatcattttaattattttttttaactgacatgtgggatcatagttgtattattttccaaatcaaattaccacgtcaatgccacatcagatgaagaccgagtatatttagccacgtcagctaaaaccgccgtccaaactgccatgggacttatattgcactgattttgacagttgagggacgaaaatcggactcgttcataagttaagggacctcagatgaactttttccattcagtcttggggagtctaggggattatcggagtatatgggcctgtgaggtcacgtgctctggtgggcttttttctttttcaaaatgggcctgcgtaaggtttattgatttcatttcggccttttactaatttatgcccaacccaaaactttgtatgggtttcttttagatataagttcagttcaggtcccttagtttgtctatgaattcgattttcatctttgaacccaaaaaatagatatgatgggcccctcaactattaaaaccggtgcaacattagtctgaaggcactatagatggttgttttgtcctatgtcgcacttggactatggtcagcctacatggagcgccacataagcggtcaactctggtcaaacgcactttagaccaactatggttcactaaaacaagatcatcgatcttaatacgtaattgataagtctacggacctatatgatacatatgctcaagtttaagtatcgaccatgtattttactcttaaaattatttccataatcatgcaccagttaggaaaagcttcaacaagcaagcaagccgaacgtatatgcgccgtattttggacaggggagtcaaatcaaccacatcaccatgcatatttctacatatacactggtcattttttttgggtacatcggaaatcattttcaccggatttagcccagacaaccagtatcccaatgagtgattaattacttgtattatactcattgttgccttgttggctctttgaggtcagaaagggacaattgaaaggcctcgattgaacaaacgttaggacatgatgcgcttctatataaattcaaggaacaaaaaagcaagctaattaaggttttgtgttctgcataattaatccattaagtatagtgagatctgaggtgaggagaggattaattaagacaaaatctagccaaacttgtgtgaatctccctctaatccatatgcatgatcccccccctcttgctttgcaaatactgtgagcttaattaattccatgtctctctctaattctgcttttgatgttgcaagttgcaagaagcttcacctctcctagggtttatacaagcagcggcatggacgactcgagcctcttcttgcattgggcggtgagcacgctgcagcaccagcacccggcggccgtcgcagtcgtggccgacgacgacgccacgttcttctcgttccaggagctctgcgacaccgaggaggtggttgttgtcccggtccaggaagaagtgatcacggaagcgcatggtggtggagccagcagaatcggcctcgccgtggccgtggatgagcacggaggctggtcaaggtccccgaatccgggggccaggccgccgtctggtggatgcggcagcaataatctgcccctgatgagctgggacttcagcgccgcctcggtggcggtgcaggtgcagccgaacggcggcggcggtggcggcgcgccggagatggcgtacgggtcaccgccggcggccgggggatccaccaccaggaagacctcggcgcccacggtggggcggcggcggcgtacgcgcagctggagcacgtcgtcgcggagcggaagcggcgggagaagatcaaccagcggttcatggagctctccgccgtcatccccaagctcaagaaggtataaaaaatctcaccaattcctcaacatgaaatgctccgatcgaatttgctttcgtctcgtgatcgatttgatgatcagatggacaaggcgacgatcctctccgacgcggcgagctacatcagggagctgcaagagaagctcaaggcgctagaggagcaggctgctgccagggtcaccgaggcagcaatggcgacaccgtcgccggcgagggcgatgaaccaccttccagttccgccggagatcgaggtgcggtgctcgccgacgaacaacgttgtgatggtgaggatccattgcgagaacggcgagggggtgatcgtgaggatcctcgccgaggtcgaggagatccacctcagaatcatcaacgccaatgtcatgccatttctggatcagggcgccacgatgatcataacgatcgctgcaaaggcaagttcttcattattatattaa
More
|
||||||||||
| CDS seq | atggcgaccaacagggatgagggcatgaccagcgggaaggagttaggtgcagccgaacggcggcggcggtggcggcgcgccggagatggcgtacgggtcaccgccggcggccgggggatccaccaccaggaagacctcggcgcccacggtggggcggcggcggcgtacgcgcagctggagcacgtcgtcgcggagcggaagcggcgggagaagatcaaccagcggttcatggagctctccgccgtcatccccaagctcaagaagatggacaaggcgacgatcctctccgacgcggcgagctacatcagggagctgcaagagaagctcaaggcgctagaggagcaggctgctgccagggtcaccgaggcagcaatggcgacaccgtcgccggcgagggcgatgaaccaccttccagttccgccggagatcgaggtgcggtgctcgccgacgaacaacgttgtgatggtgaggatccattgcgagaacggcgagggggtgatcgtgaggatcctcgccgaggtcgaggagatccacctcagaatcatcaacgccaatgtcatgccatttctggatcagggcgccacgatgatcataacgatcgctgcaaaggcaagttcttcattattatattaa
More
|
||||||||||
| Protein seq | MATNRDEGMTSGKELGAAERRRRWRRAGDGVRVTAGGRGIHHQEDLGAHGGAAAAYAQLEHVVAERKRREKINQRFMELSAVIPKLKKMDKATILSDAASYIRELQEKLKALEEQAAARVTEAAMATPSPARAMNHLPVPPEIEVRCSPTNNVVMVRIHCENGEGVIVRILAEVEEIHLRIINANVMPFLDQGATMIITIAAKASSSLLY |
||||||||||
| Function | Transcription factor bHLH25 [UniProtKB/Swiss-Prot:Q9T072] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0029250 | OsCMeo_03g0029250.01 | Chr03 | 27873347 | 27876387 | + | NAM | ||
| CDS seq | atggcgaccaacagggatgagggcatgaccagcgggaaggagttaggtgcagccgaacggcggcggcggtggcggcgcgccggagatggcgtacgggtcaccgccggcggccgggggatccaccaccaggaagacctcggcgcccacggtggggcggcggcggcgtacgcgcagctggagcacgtcgtcgcggagcggaagcggcgggagaagatcaaccagcggttcatggagctctccgccgtcatccccaagctcaagaagatggacaaggcgacgatcctctccgacgcggcgagctacatcagggagctgcaagagaagctcaaggcgctagaggagcaggctgctgccagggtcaccgaggcagcaatggcgacaccgtcgccggcgagggcgatgaaccaccttccagttccgccggagatcgaggtgcggtgctcgccgacgaacaacgttgtgatggtgaggatccattgcgagaacggcgagggggtgatcgtgaggatcctcgccgaggtcgaggagatccacctcagaatcatcaacgccaatgtcatgccatttctggatcagggcgccacgatgatcataacgatcgctgcaaaggcaagttcttcattattatattaa
More
|
|||||||
| Protein seq | MATNRDEGMTSGKELGAAERRRRWRRAGDGVRVTAGGRGIHHQEDLGAHGGAAAAYAQLEHVVAERKRREKINQRFMELSAVIPKLKKMDKATILSDAASYIRELQEKLKALEEQAAARVTEAAMATPSPARAMNHLPVPPEIEVRCSPTNNVVMVRIHCENGEGVIVRILAEVEEIHLRIINANVMPFLDQGATMIITIAAKASSSLLY
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0671800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g46790 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0671800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0029470 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0029180 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0022290 | RBH | 0.0 | 15.855202 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0029360 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0029040 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0458600 | RBH | 0.014736 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0028750 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0458800 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0029100 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0029150 | RBH | 0.0 | 4.738468 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0029170 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0028940 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0028880 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G028870 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0028870 | RBH | 0.0 | 0.0 | 0.0 |
