Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0671800 | OGI:03075250 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:26505145-26510057 | ||||||||
| Gene Symbol | OsbHLH020, bHLH020, bHLH20 | ||||||||||
| DNA seq | GACCAATCGATCAACATCAGCATAATATTTTTTAAAAAAAACATTGTACAAATGATGATACTCATAACATGCAAAACACTCATTGATATAAATGTACATGCACACATCTTATCTCCTATGAACATCTTTAAAAAAAGTTGAACCGGTACATCTTAAGATTATTCGGCTATAGAGAGTGCATTCGTAGCTCTAGCTAGTATTCTCTCCGTCCAAAAAACTAAATCTAGTACTAAATATGATATATTTAAACTTATTGCACTAAGATAAATTGTATCCAGTGCTAGATTTATTTGTGCAAATGCATGCATCACGGGCCAGATGCACGCAAGTACACGACGAGCAGATCGAGAGAGAGTGTGTGTTTACACTGTTCTGGAATCAATGGCAACATGCCTGATTGAGTAGCTAGCCAAGCTAGCTAGCAGCTGTCGTTTGTTGCTGTTTGTCAGCTTTTTGTTTCTCGCGCGCTATTTCTGCTGTTTTGCTGGAGCACAGTGTTTAGCTTCCCTACAATGTCCTCAGCTGTGACGCTCACCCCGTCCTCCACCTGATGCAAATTAAATCGTATAATTAATATGCATATATATTAATTACGAATGCAAACTCGCGAGAACTTAATTTCATGACAGTACGTTTTGACGAATTTTCGTGAAGGGTTTTATAAGCGACCCGTATAAGAAATTAGTACTGGTATAAATTTTGGTGCAATGTATATTACAGCTTTCAAACTTAATTAGTGGACGCGCATTTATATATACCTGCTATACATATCCACTCAACGACCAGTTATATATAGTACTCAGATTTTGTGGAAGATACGACGAAAAGATGAATTTGGCATTCTAATTGATTTTAAGTATGACTTTTAATTTTAAAAATCTCCTCACAGCCGCTTTCATCAATTAATTAATATTGTTGAGGACCGCTGCTATCGACTAAAAAATAACGGTGCTGCCACGCAAGCGTATTAAATAAATGTAGATGCATTCTTAATTATTTTGGTTCCGGTGCATAAATCAATTAATCAATTATCACTTGTCTTTCAGCTTGCCATAATTTTCCGGAGTAATATTTTGTTTGACACCGTGTACATATGCAATAGTTAAGTGGACGACGACGGAATCAACAATAAACACGTACTCCATTAAAAAAAATACAACCATAAGTTTTCGTATCCAATTTTAATCATCCGTCTTATTTAAAATCTTTTTATAATTGATATTTTTATTAGATTATAAAACATGAATAGTATTTTATGCGTGACTCATATTTTTAGTTTTTTTAAAAAAAATTTAAATAAGATGGACGATTAAAATTGGACACGAAAACTTATGGTTGCGCTTATTTTGGGATGGGGGGAGTAATTTCTAGCGAAAATAAATGTGCACAAGAATTTAAATCTATGTAAATTTAATGGGGGAAGTTATGCATTTACTTGCTCCTTCCACTAAATAAGATGGGCGGACATTTTGAAATTTAAGTCTTCAAATATATAACTGACAATTAGCCTAATACTTCCTCCGTTCCATAATGTAAGTTATTCTAGTATTTCTTATATTCATAATGATGTTAATGAATCTAGATAGATATATATGTCTAGATTCATTAGCATCAATATAAATGTGAGAAATGCTAGAATGACTTATATTATAAAACGGAGGGAGTATAATATAAATTAAACTGTATTTGGTAAAAACAATATCATTAGATCAACATTTGCATTTAGTTTATTTCGTACAACTATTATTTTATTGCTATAAATATTATTATATATAGTATATGATATGAGAAATTAAAACTCAAATATTAGTTTTAGTGATTCCTGATGTGGCAAGTTCGGAAACATGAAGCCATTTTTCTTACTGTGATGATTACAGAAGCCATTATATATGTATAAGATCTAGTTCCGATTAGGTGATAAATATTACCCTATATAGCATATCATAGCCAAAATTTGTTTTCAGTGATATTAATTAGTTAACTATACTAGCTACTCCAAGTACTATAGTTTTATCCCAATCAATTTTATTTTCCACCTCTCTTAAAAAAATATTTTCCACCTAATTATAAGCCACTATGATTATGCATGTATAAAGCAATAAATTTACAATTGACAGGCCCAGCATTTTTTTAATTGAAAATCTTGCAACTAGAAAGTATATAAGAAGTGCATAAAGAATGACTGTAGTCATAAGATATGTTGTACTACATAACATGATTATCATCACGATATACCTTATGAATTTTAGTGTTCTTACTACTCCTGCAGTCAGCACAAGGCAAACCCAGACGTGAATATTAGGGAATGACCATTAATATCAATTGATTAGAAGAGGTGAGGCTTCGAACCCAGGTCGTCTAGCCCACCACCTTGTGGAGCTAGCCGAAAGACCCCTAGACGTTTCTCAGCACAAAGCAAACCCATATGCTAGCTGTAGCAAAAGTTTATGCTCCAGCACCAAGTGTAAACTATTTTTACTTACTTACAGCTTTGTCCGTGCTTGTTGAAGATGATCAATTCGAAATATTCTTAAATCGAAGCGCTTGTGTGGTCATAACCTTACTTGATCTTGTAAATTGTTTAAGGCCCCCTTTGAATTGGAGGAAAAATGGAGGAAAAACAAAGGAATTGAAATCCTACACTATTCATGCCTTTGATTCATAGGAATAAGAAAAAGAAAAAATGTAGGAAACTTTCCTATTCCTACAATTATAGAGCAAAACGTAGGAAAGTTAACATCCACTCTGACCTCTTGGAAAACTTTCCTTGAGTCTATCTCTCTCATCTCATTCCTGCATTTTTCCTGCGGTCTAATCAAACAGTCATTTCTATATTTTTCCTGTGTTTTGCAATCCCCTGTTTTACACTTACATTTCTATCAAAATCCTGTGTTTTTCCTATTCATCCGTTTTTTCAATCCTACGATTCAAATGGGCCCTAAGACTGGTGCCACAAATTTTAAAGCATATAAGCCATACTGGTCCATATTATTTGGACATGTTATATTTGACATTGAGAGATCTAGCTGTAAATTAATACATATGCATGATTCTCCCAACATCAAATATATTTGACCAGAGTGGAATATTAACTACAAGACATATCATGCATTTACAAAAAAAAACACAAAACAAGTTGGTTAAATTCTCTCGAATTAAAACGACGAATTAATTTGTCTTACCTTTGCCATGATGGTTATGATGGCGGTGCATGCCGAGAAGGGCATGACATTGGTGTGCGTGATGCCGAGGTGGAGCCCTTCAACCGCGGCGAGCAGCCGCACCAGCGACCCCTTGCCATTATTCTCGCCGTGGATCCTCACCATCACGTTGCCGTGCGAGATCTTCGCCTCGATCTCCGGCAGCGAGCTTCTCGCCGTGCCGCTGCTGCTGCTTCCAGCCACGGCCGATGACGCTGCGGGGCAGCCGCCGTCCGACGACGACGTGGCTATGCACGGCTTCTTGAGGAGTATTGCCGACTCGACGCCGCCGTTCTGGTGTTGCTCGAGCTCGCTGAGCTTCTCCTGCATCTCCTTCACGTACCTCACCGCGTCGGAGAGGATCGTCGCCTTGTCCATCTGTTCAAATCGATCTTCGTGTTCAGAGAAGATGGTGAGAGAAATGAGCGAGAAATGGAGATATATGTATTATACCTTCTTGAGGCCCGGGATGACGGTGGAGAGCTCGATGAACCGCTGGTTGATCTTCTCCCGGCGCTTGCGCTCCGCGATGATGTGCTCCTGCGCGTACGGCGCCGCCGACGAGGAGCCGGAGCCACCGCCGCCGTTGCCTTTGGAGGAGGCTCTCCGTGTCTGTGCAGATGGCGATGGCGACACGGCGGCCGGCAGGTATCGAACGCCGCCGCCGCCGTAGCGCGCTCTCGTCGTCGTCGGCGGGTTCGACGGCGTGGCCTGATCGTTGCACGGCTGCGTCATGGCCGACGAGAAGTTCCAGCTCACGGGCCAGAGGCCGCCGCCGCCGCCGCCGCCCCCGCCGCCAGCGGCGCACCTGACCGAATTTGGCGACGTCGACCATCCGTCGTGCTCCATGACCGCGCCGCCGCCGCCACCGGACACGCTGTCCGTGTCGCCCGAGCTCCAGCTGTTGGAGGCTCGGTGGCCTTCGTGCGCCGTTGGCTCCGGCGGGGCCATGCCGTTCTGCGACACCGACGACTCGCGGAGCGCTTGGAGCGACGGAAAAGTCGCGTTGTCGCCGGCGTACCCGCCGCCGGCAGGCGGCGGCGTCGCCGGCAGCGGGTGCAGGTGCTGCAGCGTCTCCATGGCCCACTCCATGAACAGGCTCGAGTCCTCCATGTCTCCAAAGAAAAAGAACTCTACTAGCTATCTACCTAGACAAAATAACAAACAAACAAACAAACATTTCACTCTTGAGTCTGATCAATGTCGATCTAGACATCGGAGAGTTATATATCTCCAAGAATCCAAGATTAATTGGACGATCGAGCGAGAGCTAAGCTACATGATTCAAACAGAAAATCGACTGGTCGAGATGTGAATGGTCGAACAAAAACTTTTGCAGCCAGTCTGAAGAGAAAACTATTTGGCTACTGGTCTACTGGCAAACAAGCACAGAGATCCATCATCCATGCATCCGGGAGACATATACAGCTATCAATCACAGACAAGAACAGTAGCTGACTTGATGCCACTACAGATTGCCCATTGAATTGGAGCTCGTGAAACACACAGAATCGTTTGTAGCCAAGACAGTGGGACAGTACCACTTACCTGCAGATCTATCAACAATCTCTCAGATCCTGCTTAACATGCAAATAATATTTGGGACAATGTATGGAAGAGAGAGTCACTCTGAAGAACACCATTCAAGACTAGTCGAGGATTTTTTGTGCTTGGCCTAGCTGGCTAACCACCTCTCTCCATATAAATCATGTC
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| CDS seq | ATGGAGGACTCGAGCCTGTTCATGGAGTGGGCCATGGAGACGCTGCAGCACCTGCACCCGCTGCCGGCGACGCCGCCGCCTGCCGGCGGCGGGTACGCCGGCGACAACGCGACTTTTCCGTCGCTCCAAGCGCTCCGCGAGTCGTCGGTGTCGCAGAACGGCATGGCCCCGCCGGAGCCAACGGCGCACGAAGGCCACCGAGCCTCCAACAGCTGGAGCTCGGGCGACACGGACAGCGTGTCCGGTGGCGGCGGCGGCGCGGTCATGGAGCACGACGGATGGTCGACGTCGCCAAATTCGGTCAGGTGCGCCGCTGGCGGCGGGGGCGGCGGCGGCGGCGGCGGCCTCTGGCCCGTGAGCTGGAACTTCTCGTCGGCCATGACGCAGCCGTGCAACGATCAGGCCACGCCGTCGAACCCGCCGACGACGACGAGAGCGCGCTACGGCGGCGGCGGCGTTCGATACCTGCCGGCCGCCGTGTCGCCATCGCCATCTGCACAGACACGGAGAGCCTCCTCCAAAGGCAACGGCGGCGGTGGCTCCGGCTCCTCGTCGGCGGCGCCGTACGCGCAGGAGCACATCATCGCGGAGCGCAAGCGCCGGGAGAAGATCAACCAGCGGTTCATCGAGCTCTCCACCGTCATCCCGGGCCTCAAGAAGATGGACAAGGCGACGATCCTCTCCGACGCGGTGAGGTACGTGAAGGAGATGCAGGAGAAGCTCAGCGAGCTCGAGCAACACCAGAACGGCGGCGTCGAGTCGGCAATACTCCTCAAGAAGCCGTGCATAGCCACGTCGTCGTCGGACGGCGGCTGCCCCGCAGCGTCATCGGCCGTGGCTGGAAGCAGCAGCAGCGGCACGGCGAGAAGCTCGCTGCCGGAGATCGAGGCGAAGATCTCGCACGGCAACGTGATGGTGAGGATCCACGGCGAGAATAATGGCAAGGGGTCGCTGGTGCGGCTGCTCGCCGCGGTTGAAGGGCTCCACCTCGGCATCACGCACACCAATGTCATGCCCTTCTCGGCATGCACCGCCATCATAACCATCATGGCAAAGGTGGAGGACGGGGTGAGCGTCACAGCTGAGGACATTGTAGGGAAGCTAAACACTGTGCTCCAGCAAAACAGCAGAAATAGCGCGCGAGAAACAAAAAGCTGA
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| Protein seq | MEDSSLFMEWAMETLQHLHPLPATPPPAGGGYAGDNATFPSLQALRESSVSQNGMAPPEPTAHEGHRASNSWSSGDTDSVSGGGGGAVMEHDGWSTSPNSVRCAAGGGGGGGGGGLWPVSWNFSSAMTQPCNDQATPSNPPTTTRARYGGGGVRYLPAAVSPSPSAQTRRASSKGNGGGGSGSSSAAPYAQEHIIAERKRREKINQRFIELSTVIPGLKKMDKATILSDAVRYVKEMQEKLSELEQHQNGGVESAILLKKPCIATSSSDGGCPAASSAVAGSSSSGTARSSLPEIEAKISHGNVMVRIHGENNGKGSLVRLLAAVEGLHLGITHTNVMPFSACTAIITIMAKVEDGVSVTAEDIVGKLNTVLQQNSRNSARETKS |
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| Function | Transcription factor bHLH25 [UniProtKB/Swiss-Prot:Q9T072] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0671800 | OsNip_03t0671800-01 | Chr03 | 26505145 | 26509491 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGGACTCGAGCCTGTTCATGGAGTGGGCCATGGAGACGCTGCAGCACCTGCACCCGCTGCCGGCGACGCCGCCGCCTGCCGGCGGCGGGTACGCCGGCGACAACGCGACTTTTCCGTCGCTCCAAGCGCTCCGCGAGTCGTCGGTGTCGCAGAACGGCATGGCCCCGCCGGAGCCAACGGCGCACGAAGGCCACCGAGCCTCCAACAGCTGGAGCTCGGGCGACACGGACAGCGTGTCCGGTGGCGGCGGCGGCGCGGTCATGGAGCACGACGGATGGTCGACGTCGCCAAATTCGGTCAGGTGCGCCGCTGGCGGCGGGGGCGGCGGCGGCGGCGGCGGCCTCTGGCCCGTGAGCTGGAACTTCTCGTCGGCCATGACGCAGCCGTGCAACGATCAGGCCACGCCGTCGAACCCGCCGACGACGACGAGAGCGCGCTACGGCGGCGGCGGCGTTCGATACCTGCCGGCCGCCGTGTCGCCATCGCCATCTGCACAGACACGGAGAGCCTCCTCCAAAGGCAACGGCGGCGGTGGCTCCGGCTCCTCGTCGGCGGCGCCGTACGCGCAGGAGCACATCATCGCGGAGCGCAAGCGCCGGGAGAAGATCAACCAGCGGTTCATCGAGCTCTCCACCGTCATCCCGGGCCTCAAGAAGATGGACAAGGCGACGATCCTCTCCGACGCGGTGAGGTACGTGAAGGAGATGCAGGAGAAGCTCAGCGAGCTCGAGCAACACCAGAACGGCGGCGTCGAGTCGGCAATACTCCTCAAGAAGCCGTGCATAGCCACGTCGTCGTCGGACGGCGGCTGCCCCGCAGCGTCATCGGCCGTGGCTGGAAGCAGCAGCAGCGGCACGGCGAGAAGCTCGCTGCCGGAGATCGAGGCGAAGATCTCGCACGGCAACGTGATGGTGAGGATCCACGGCGAGAATAATGGCAAGGGGTCGCTGGTGCGGCTGCTCGCCGCGGTTGAAGGGCTCCACCTCGGCATCACGCACACCAATGTCATGCCCTTCTCGGCATGCACCGCCATCATAACCATCATGGCAAAGGTGGAGGACGGGGTGAGCGTCACAGCTGAGGACATTGTAGGGAAGCTAAACACTGTGCTCCAGCAAAACAGCAGAAATAGCGCGCGAGAAACAAAAAGCTGA
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| Protein seq | MEDSSLFMEWAMETLQHLHPLPATPPPAGGGYAGDNATFPSLQALRESSVSQNGMAPPEPTAHEGHRASNSWSSGDTDSVSGGGGGAVMEHDGWSTSPNSVRCAAGGGGGGGGGGLWPVSWNFSSAMTQPCNDQATPSNPPTTTRARYGGGGVRYLPAAVSPSPSAQTRRASSKGNGGGGSGSSSAAPYAQEHIIAERKRREKINQRFIELSTVIPGLKKMDKATILSDAVRYVKEMQEKLSELEQHQNGGVESAILLKKPCIATSSSDGGCPAASSAVAGSSSSGTARSSLPEIEAKISHGNVMVRIHGENNGKGSLVRLLAAVEGLHLGITHTNVMPFSACTAIITIMAKVEDGVSVTAEDIVGKLNTVLQQNSRNSARETKS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0671800 | OsNip_03t0671800-02 | Chr03 | 26505204 | 26510057 | - | IsoSeq | ||
| CDS seq | ATGCATGCATTTGCACAAATAAATCTAGCACTGGATACAATTTATCTTAGTGCAATAAGTTTAAATATATCATATTTAGTACTAGATTTAGTTTTTTGGACGGAGAGAATACTAGCTAGAGCTACGAATGCACTCTCTATAGCC |
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| Protein seq | MHAFAQINLALDTIYLSAISLNISYLVLDLVFWTERILARATNALSIA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0632600 | RBH | 0.0 | 0.0 | 0.361966 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g46860 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0671800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0029510 | RBH | 0.0 | 3.399044 | 1.257516 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0029220 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0029300 | RBH | 0.0 | 9.016187 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0029400 | RBH | 0.0 | 0.014913 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0029090 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0458900 | RBH | 0.3858425 | 0.5202395 | 0.051129 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0028800 | RBH | 0.0 | 0.535372 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0459100 | RBH | 0.764422 | 0.0103475 | 0.4432355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0029140 | RBH | 0.0 | 0.157960 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0029200 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0029210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0028990 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0028920 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G028910 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0028910 | RBH | 0.0 | 1.840485 | 0.0 |
