Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0023050 | OGI:03051990 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:19803126-19810630 | ||||||||
| Gene Symbol | OsWD40-76 | ||||||||||
| DNA seq | ccagcttggaacttgtggtgtttacatataactacatagtgcttctatccagagacaggttcaacaagacgactgatataagatcccagttccaaaacttaaaacagaataaatgaacatggtaccataatatacaataatatggaatacatcaacatttaagcaaatatttctagaggttccaagcgaaatgaacaggcagaggcaacagagttagatgctgaccatcccttcaacataaacaaggaatttcgtcaacagatgtggttgacatgaacttaagagaactagggaaatggagtgtccgacataaatactttttttcttgcgaggatacaaaaatactaatttgaatgacgctttactctcaccatacacatcaaaccacacgattacccctgtcgtgagacaactaaaacacttctaaggtgctgccagtgccttaggcttcggctttacttccacttcattcactgaccggataaatattgcatcaggttcatggctgaacaggaaaaccacatagtatgtcaagattccactattgttgttcttttagataatggacaatgtcctcctaatgacaggaagaaaacaaagtaaaatcttacgatttttctccctcttcataagtgtagctggatgccacagcgagcaggtgcccatccttactaaatgacaaagcagctatgcttgacgcatactttgaatactgcaataaaagaagaacattaatggcaactattttagcccttgtcttcattgagatagtatcacttgtacctgatatagtcttttcttgttaatgccatcccatacattcacaaatccgtcacacccaccagtggcaaatgtaccatatctgcagaggatacaaaagacccaagttaaagacaacgagcaattctataaatcaaaagctgacaaaaggcatgtcaagcctttacattggatggaatgcaattgcattgacaggataaacggtgtcccggccagcttctgatttccgatgacacttgaaagcatacctgcataggattatcagatgagccaacaagtaatttttcacaggatatcacctacgatagatcagagggaaggtacactgatattatattctgagttgactgcattatcttctacagctgccttaataaagttaaaatatgacatagatgttcgttcaatgatgcagtgctgtgtaatacagaaagtcaacttctgtgtataatacaagtactgaaaattctgcatttcataatacttttcgttactagtatcaactgagcaccctacttttcattacccccacccgtaaagcaacccaaaagcaatttggttgggccttgatggccaaatgggatttagtaagataatttggatgttcctacttggttttctggaaaaagaaatctgacagtgaaattttaaatatgattccgctctgctcattcatagcaacaatctatatgacacctaagtcaacagtgataggcagacaaaagatgcaggctcgtaacctgctcaagctaaaaattagccaatctcaattttaggctcaagctcatgcaacttgatacgtgggtgtcgaggttttacctgagctctctgcacacaaatttcaaactcctaagcaagcagcatggcctaactacccctattcttcaagaaataaaaataaatggaagctagctagcaccaatgtcatcatctcttcaatccctagtcagcagtcaaggtcaattccatctccacctcaatgagtatttaattgtgttgattatagacagctttgagatgccttttgtgttttgtgtttgaagaaccaaaatgggaaaactggttacagcacatgaaattaagcaagttggtgtttgttattcataagcaagatggccggcttcttagaatcttaagctcccccaaacagagccttttagctacatgagcaaggttcgatgaaagaaatctaacttgccaatccaatatgactttcaaaggaacatggagcagcagctagtgatattcattcttgcccactgagaaccatattctacaccttctctatgttgatgacatgctcagacatgatcaagtgctcttgttctactccctccagtcataaaataaagtcattttgggatgtgtgccgccaacataagtcaacactgaccataaatactgtttaaaatggtgatgccaagtccgtcctaagtcctaacaaaagcattcctaagattatacttgtctgacttaagTttttttttttttgcaaaagaatcaagtactgatttgaaagttatgtttgtcaactttgaaaagcccaaaacaacttccttccatgttctacaagtgtctatgcatcttgcatattgacaaaacttagctcaacacatgccttgttcaatttatgccttgtctatagcagtaaccaatttgaattttgaattcaaaaacatggattcagacttttgtccggtcaagaactggaaagtgataaacgctgctaaaacaagcggctaactgtttcatggagtgaccagtattttttcccaaaacccatatttacaaccttggtttactagttggtcaactagttgatcaggactgcaagtcaccccttttgtaacacctttagaactgagaacagcgcaagtttctaaccacaaaaaccatttcctttgacctagaaatctccaatgcagccacatagtagtgatcagacgactactttttggtcatcaaaccatggatacaaatggttacacttagatcaccaaaacgtcccaagttcagaaataaaattatcaagaaattttgaaatgatagataaagtaactcataatttatggtctaatgttgagtttttgcacaacccaaagtgaggtacgcatgattgcaactaggaactagctaccagtttaaactggatgtctttatgtatgttagatatttcatgtttttataataactagaaaaaatacccgtgcattgcaacgggttacaggaattttagtcttacatattacttaagttcaagatatcctactctaagctcaaggttgatcaaaaggagctggccattatttgctcgatgaaaatgggagccctgctatggtttttgcatccatgcacaacctataacatccagttagatagttaagtcttccttgttatgaaaatagatgcataacggatacacgaattttatatgaaaaatccttatgggaaaaaactatgggcgacgatcggcaatgatcagtatagaggagttgaatacaaacgtagatgacacatagtgttgtcgcatccttcccatgcggcatacaagagatatataaaaggagaaatctatgagtcctaatatgtaatacaaagtcctattaggtaactaacccgaatatattgtatgctaaaatttagttaacatatttcacaatctctaccttgagacaaatttcgtcttgtagcataaaaatctttaatctccaaacaaactcatgatgtgacaaaatcattgtgtgcgaaatagtcacttggacaataaaaccataacacccttaatctataagaggtataccatacttcaaactcgccattgggaataaattctgaatttattggtataaacttgcgtgaacctagcagaaacgcgatgcactttgggtgaaaaaagaagtattttgatcttcataaaaacctcatagtaatctggcatatgagcttagcaaaaactgaacctaaatttgatttacccaaacagaacgaaagcaatgcagatgaattaattccctgtacatgcacgaagcgacaatctataaatcttctggtgcacaagcttgggtggacgtagcaattcaccagaaaatcacccactgtagagtgacaggggcagcgaattaactttgcttggccttctcgtgagccgtgcggtagatggattggctggcccatcgctgtctcttgcctcctgacagaaacggattcggtcggcgtggtcaacacggaaaaagggcagaggcaatgcaaatcttcaacgaacgtgtggcgtcgcgtgttatacacaggaatcggacgcgaactgcttcgcgcgcggagacaatatcagacgcaatcggacgcaggcgacgtacgaaaactacggcaaaaacatcttcaatttttataataggtagagaagaagcaatggaggacaggaaactaaaaattgttctgtaaaaacagaaaagctgtttggatggaagattcttagtccattatattaagtcttaattaacatgctccaagaaacaaatgttttaaaacgcaagctaagatgcagaaaacatactttttagattgagcagactcagatagatcaaagaattccatagaaactcgtccttcaacagaacttagggcatatcctgaagcattgacaagaaagatcaaggtcagtcaacaaaatatatttcactgtagtaggaaaaataataatgaacaatgcaatccacagaataaaagcaaggtgactgtattgattccaaaacttacacacaaaaaaaaaccatgtataagatcaacagccactctaaaggaacttataccataaggctcaaatcaaaatagatggaaagaagcttagattatctaatgctattcatcttgtctgtgcacacgcacagacaaaatagacatattatctagcatcaagacagaaggaaattcatctatacccccccccacattacattaaatgtagtggtgatggtggtagtgaatctaacaccctattagctcccactacatcttgtacagattgctaccaaatttttttctaatattacgtaatatatcatttatatgttattctatctttatttgtatttttctaaaatcataatttaacaagtcccaggaaaactctaaaatgttaaaaatgtcttagtttatatgtaatgcatgagttaacttcataggtaatacatgtaaacaccatcaaatgctcttgtaacaaaaaaggaaatcaaggacatgtttggtgcaaaatcaaattgtccatcacaagcataagggcatttagctagtgtttgaaacatgggagacaactggaaatgtactgtcctgcagcataagtaatcaaaagagagcatattacctgttccattggggaaacatcgaacacaacgtgtttgatatttcaaagaagagtcccttttttgctcatgttgagacatattacgcagatcataaatattgacatgtcttcctgctgttgcaacaaccaacctattccccactaacgacagagaatatacacgctcaggttgagcatatgtcccaacaagcgtacgctctggtccacttacacctcttggatcccaacacttgatagtcttatcccagctgccagtgatgacttgacctgcatagataaaaatccataaatgaacaggtaatttcaatatccacaaatgaatagttaatttctgtattgtttttaggatgtaacaaattatacatgacaaccagatcgtagtacatgctaatatatgcaatgccacagaatcaagttttgcacaatttccagaaatttaccaactagaagtttggttactttagccaatctgtatagcatattcactaaaacaagcagaaccgaggacaggaagaaattcattcatgaatcatctgctgactggtgtttgcccttaaattaaaagaaatggatgctaccctaacttgctactcccaccagtaatgcaggtcattctctctaaaagatttcaaatagacatcgatactcaaaagatttgaaagttcgataatcatgtctgcaagatgtgtcacgagaaattaagtcagcactcagcactaaagcaggtaagaacaccaacatcactaccagatagagaattagtatgaaacataaacaacaaactgacatgggcattcgccgaatcctctatccaaagagttaagcactatgatcgattttttcatgctcaagtacaaactaatagtacaatatagaattcaaataacaattcagccagaaaatgtgcatgacatccaaaataatgagaacttgattactccagtaaacagccagttaaactcctaaggttgaagattttaatgcaggaatgtgtgttcagtaaaatcgaagtacctgcagcataagagtactccacgcagcgaacaggagcatcatgccgtcctaaaagatcctcttttgctgaaccaaatactaacctggaagtcacgtgccccattgcttgttagtcttaccaagtcttcacgttatggtagaatataataaggatgagctaatgatgatatcaataagaaaaaatataagcctatttacaagcaacaaagtgttgagtttagacaactgaatttacaagaaacatttagttcactcatgtgttcatggttgcttaatgacgctagtagctgattatatgtatttgaatatatacatatatgtgcatacatgttaattgttatacggggaaatacatccatggcattgtaacatggtccattgagcataaaatctactccatttctccagcctctaactaggatcccgaattaacaacccttaacattttctatcatctgtgtcaattgcatcccaatttgtttttctggccgttggacggtaacacagcttatgaaagacaactttaagcactattttatataacaatacaatttggaaactaaataaaattatagtgtcatgagattgagaaaaaaaatctactcaaatctggttacgatagtactgatgctccaagttgactcgagggagtactatcccaaaccatcatgagcaagcatataaaggagcaattgttgaaaatgacagtatccagaacaaacctcctgaaccgtcaaatcaaccgcgtgcaaagagttgaatgaggcaggagaacggggttaactcaaaatggctgacctacgcacggtgtggtcggcgccggcgctaaacccggaggagtcgtcgtggaagcagcagtcgagcacggccccggcgtgtacgaactcacccttgagcacgttcgcgtcggcgtcgtagaggcgcaccgtctaaaagagatcgcaaggaaccaaaccccggtcagatcttccaaatcaaaggggggctagggtttacttacgggccaccaagaccgcaaggaacggagagggacgcgcatcgtcgctgaccttgtcccaggaggagacgaggaggtggtcactgtggttggagaaccggaggttggagatcccgtccgtcggcgggttggcgagctccttgccgctgccgacggcggctgctggggcggcggcggcgctcatggtgggaggcccaaagggaggaggaattggatcgttagggtttcggctcggcaggaggaggggagcgtgtggggaggaaggggaatccaaatttgaatttgcaacgggcagagtgaggaggatgaggaggacgacggggagccgaaggttttgagaaccggaaaggaagcgga
More
|
||||||||||
| CDS seq | atgagcgccgccgccgccccagcagccgccgtcggcagcggcaaggagctcgccaacccgccgacggacgggatctccaacctccggttctccaaccacagtgaccacctcctcgtctcctcctgggacaagacggtgcgcctctacgacgccgacgcgaacgtgctcaagggtgagttcgtacacgccggggccgtgctcgactgctgcttccacgacgactcctccgggtttagcgccggcgccgaccacaccgtgcgtaggttagtatttggttcagcaaaagaggatcttttaggacggcatgatgctcctgttcgctgcgtggagtactcttatgctgcaggtcaagtcatcactggcagctgggataagactatcaagtgttgggatccaagaggtgtaagtggaccagagcgtacgcttgttgggacatatgctcaacctgagcgtgtatattctctgtcgttagtggggaataggttggttgttgcaacagcaggaagacatgtcaatatttatgatctgcgtaatatgtctcaacatgagcaaaaaagggactcttctttgaaatatcaaacacgttgtgttcgatgtttccccaatggaacaggatatgccctaagttctgttgaaggacgagtttctatggaattctttgatctatctgagtctgctcaatctaaaaagtatgctttcaagtgtcatcggaaatcagaagctggccgggacaccgtttatcctgtcaatgcaattgcattccatccaatatatggtacatttgccactggtgggtgtgacggatttgtgaatgtatgggatggcattaacaagaaaagactatatcagtattcaaagtatgcgtcaagcatagctgctttgtcatttagtaaggatgggcacctgctcgctgtggcatccagctacacttatgaagagggagaaaaatcccatgaacctgatgcaatatttatccggtcagtgaatgaagtggaagtaaagccgaagcctaaggcactggcagcaccttag
More
|
||||||||||
| Protein seq | MSAAAAPAAAVGSGKELANPPTDGISNLRFSNHSDHLLVSSWDKTVRLYDADANVLKGEFVHAGAVLDCCFHDDSSGFSAGADHTVRRLVFGSAKEDLLGRHDAPVRCVEYSYAAGQVITGSWDKTIKCWDPRGVSGPERTLVGTYAQPERVYSLSLVGNRLVVATAGRHVNIYDLRNMSQHEQKRDSSLKYQTRCVRCFPNGTGYALSSVEGRVSMEFFDLSESAQSKKYAFKCHRKSEAGRDTVYPVNAIAFHPIYGTFATGGCDGFVNVWDGINKKRLYQYSKYASSIAALSFSKDGHLLAVASSYTYEEGEKSHEPDAIFIRSVNEVEVKPKPKALAAP |
||||||||||
| Function | Mitotic checkpoint protein BUB3.1 [UniProtKB/Swiss-Prot:Q9LJN8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0023050 | OsCMeo_03g0023050.01 | Chr03 | 19803126 | 19810630 | - | NAM | ||
| CDS seq | atgagcgccgccgccgccccagcagccgccgtcggcagcggcaaggagctcgccaacccgccgacggacgggatctccaacctccggttctccaaccacagtgaccacctcctcgtctcctcctgggacaagacggtgcgcctctacgacgccgacgcgaacgtgctcaagggtgagttcgtacacgccggggccgtgctcgactgctgcttccacgacgactcctccgggtttagcgccggcgccgaccacaccgtgcgtaggttagtatttggttcagcaaaagaggatcttttaggacggcatgatgctcctgttcgctgcgtggagtactcttatgctgcaggtcaagtcatcactggcagctgggataagactatcaagtgttgggatccaagaggtgtaagtggaccagagcgtacgcttgttgggacatatgctcaacctgagcgtgtatattctctgtcgttagtggggaataggttggttgttgcaacagcaggaagacatgtcaatatttatgatctgcgtaatatgtctcaacatgagcaaaaaagggactcttctttgaaatatcaaacacgttgtgttcgatgtttccccaatggaacaggatatgccctaagttctgttgaaggacgagtttctatggaattctttgatctatctgagtctgctcaatctaaaaagtatgctttcaagtgtcatcggaaatcagaagctggccgggacaccgtttatcctgtcaatgcaattgcattccatccaatatatggtacatttgccactggtgggtgtgacggatttgtgaatgtatgggatggcattaacaagaaaagactatatcagtattcaaagtatgcgtcaagcatagctgctttgtcatttagtaaggatgggcacctgctcgctgtggcatccagctacacttatgaagagggagaaaaatcccatgaacctgatgcaatatttatccggtcagtgaatgaagtggaagtaaagccgaagcctaaggcactggcagcaccttag
More
|
|||||||
| Protein seq | MSAAAAPAAAVGSGKELANPPTDGISNLRFSNHSDHLLVSSWDKTVRLYDADANVLKGEFVHAGAVLDCCFHDDSSGFSAGADHTVRRLVFGSAKEDLLGRHDAPVRCVEYSYAAGQVITGSWDKTIKCWDPRGVSGPERTLVGTYAQPERVYSLSLVGNRLVVATAGRHVNIYDLRNMSQHEQKRDSSLKYQTRCVRCFPNGTGYALSSVEGRVSMEFFDLSESAQSKKYAFKCHRKSEAGRDTVYPVNAIAFHPIYGTFATGGCDGFVNVWDGINKKRLYQYSKYASSIAALSFSKDGHLLAVASSYTYEEGEKSHEPDAIFIRSVNEVEVKPKPKALAAP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.898196 | 13.612857 | 7.865892 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0448600 | RBH | 1.967152 | 1.293184 | 5.901382 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g33580 | RBH | 1.293582 | 0.722943 | 1.322102 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0448600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0023160 | RBH | 1.040359 | 13.851074 | 3.308849 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0023000 | RBH | 0.078910 | 4.571487 | 1.800730 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0021460 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0023060 | RBH | 0.131268 | 0.651585 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0022850 | RBH | 2.064017 | 27.015800 | 12.115891 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0317100 | RBH | 1.680472 | 2.4881785 | 32.6523525 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0022620 | RBH | 0.226001 | 0.940017 | 1.414852 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0318700 | RBH | 2.928748 | 6.843036 | 12.435234 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0022910 | RBH | 0.138721 | 0.769098 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0022920 | RBH | 0.113858 | 32.520535 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0022990 | RBH | 0.972753 | 10.531077 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0022830 | RBH | 0.0 | 1.503787 | 1.547278 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0022700 | RBH | 0.148885 | 7.531422 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G022680 | RBH | 0.000000 | 13.158223 | 2.471966 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0022610 | RBH | 0.629256 | 10.582121 | 8.374249 |
