Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0009310 | OGI:03017470 | 3/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:6655455-6658928 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttttgcagtgaatgtggtgccggccatggcgacaatgaacagcacccccgacattggtacggtatagcagtgtcaggctgcaggctgccggagaggagcgccccaatgtgccgcgtgcacgccgagcgccccaacgccggcgccgtcgaagctcgcggcagccattgatggattttttttttcctaatctttgagtctttttttgatcgtatctcttactaatttgttttgtttatgttttttgcatttgcagcacctttgcagtcctgcagcaggtgcgaatgtttcaggtgtggtggctctagtttgtttttcactagagcccttcatgctgctcaagcaagaaagatgcatcagcggaagcagctacctggttctgcagtatcaaattccaaaaaaacaagtggcatcaagggtaaaaaggtagtacaagaaaaaatttacaccaggtgcactcctgctattctctcagatctattctcaggttttggtgAttagcaaaaagagctagtgaaacagatggagttttatGggttgctttccatgaggctgactaaactgaacaagcaattcggagcatggattctgtgcaagctagacccatcatcaggtaatctgtttgcgggatctagacatgaaatttgtttgacatgtgaggatgtcagcctacttttgggaatcccttgtggacggaaggagattttgcctgcaatAaaaaacgaggtaaaagatgttaaggcttatatgtgttaaatctttgagaaagattcctttgatggacttaccattgtaacaattcagaggatattggagaaaaaatttaacaggacgatgactgttcacgaacagattgtattcaagactgcttttAtaatcttcgttgtaaccaaattcttggctcctcaatctgttaacaatcacatatctataaggtatatgaaggctttggttgatgtagaaaatAttcacaagtacaactgggcggaatttgttttgcatgacatcaaagatgcagcagcaacattgcaacacaaaatacgccatcgaaaaagcattggttacatcaatggctgcattatactacctcaggtgagattatcctattattcgttcgaattatttgccttttactttctaatatactcgcaacatcttttcacatgctataatttatactgctcagcttttttatctggacaatctggatttcgggacggacactcccgagcaggaaaacattccaaggattggcgtgtacaatgactccatgatagcagaattcattgagagggatgtattctcaagaaccggaatcctttccccgcgtatggaaagatgaaggtaaatcaactctcctgccggtagagtattcttgttgaaatttccttgtgcagaaacttcagactactgacatttttttgggtttcagctgcgaaacaaacatgatgaaaaatacaatcttggccatcatacgggtgcaatagaggtgcaatctcatgtagtttgtcaatctattcaatataaaaagaatccatttttccataagaatttgttgatatatctgtacacaggctatccatgtggatcgtacctacgatgccaggtctgacatcgagcccccaagctttaatctaggaataacacaagatatcgaagaagcaaacatggtggcatgtaccccaggtcatgacatctccaatgtggctgaagactctgacaagaacaagaactcaactttttagcacgtaccccagatcagccaatctcaaagtcaGtagatgcctctgacaaatccggagaaggtaatgcaatgcacaaaactccctcttcgcatggaggtaatgatacccacaagcctatatcagtttttcattttcattcataaccaaccacatgcacataatatgtctcactcttactgttctgtctcataataggttaccaacaactaaacttagtagtttctctccgtactctatgttgaaagagacgagtggggcaggattttcatgcgtgaggagtacgcatgtacaaagctcccacctaaatccaagagagaattatcggcggtccttctgatatcctattcgatcggccaaagaggtcgattaaaccaagccattcagtgaaatcaccatttctgagcaagcaacactctttcgtcaggcatgaccagaaggcacttgatgatttatacacatatgcaatttcaatcactgatgcagaagctcttaagtaagccacctatctgaaacacttgatgatttatacacatatacaacttcaatcgctcatgcagaagctctaatgtaagccacctacctgaaatgttcctttctttcaccactaattgtaaagatatcacatttaacaggaaaatctgggttcacatctcccaacctgtccctatgtcattaagcctacatgacatacaacaggctattcggctagacactcaaatgcaagaagaaacattcaatgttgcagttcaagtattagcagcggatgagatacagagatttggaggaactgattttgtaggctggagacatttcttaaatcaagattttgcagtaagtgcttccaattactctagactattttaattcttaaatatggtgtgttttaacacaatatggcgctgtagatgtttgcaacagctggtgatgaccagtggaacccagaggatcatctcccctcattcaaagatgactccctgataccatatgacgtacctagttgccacctggtttgataattaacagcatcttgaaaaattcagtacatcaagtgcaaatgttcaggccactaacttttgcaatgtcaatattaatttgcagatatttattccactacttcaaccactgcactattctctatacgcatttgatatggagaaaaaaaaattatgcattcttgacccactgagagacgcctcgaaaagatcagaggatacagcagaaagacacttAaaaacaaaatttcacatttcatctgctctgaaggagtgcatgaagcttgcatttccagattgggacgaggatataccaaactgggtttctgagttcccttcggccatcccagctataaacaacaggttccagttcatgctcccaatttgatccaaattaatttttccattctactcatttatggtcattacaataataacaattttggtaggctggaatgtgcctttcacgtgctctactacatgcgaaactgggatggaactcgccttgtgAaccccccaaaatctgtgagttttatgtacacactaggttcaacttaagtttcattgaagtagcttccttttataataaatatttttctatattaacaacaggatcAacgagatcttcgaaaggaatttctgtccaacttattgtcattcaaaggcaacgaagctattctgccggacttcgtcgttcactgcctgaagttatctaacaagatctgagcatgttatgcaag
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| CDS seq | atgcctctgacaaatccggagaaggtaatgcaatgcacaaaactccctcttcgcatggagtttctctccgtactctatgttgaaagagacgagtggggcaggattttcatgcgtgaggagtacgcatgtacaaagctcccacctaaatccaagagagaattatcggcgaggtcgattaaaccaagccattcagtgaaatcaccatttctgagcaagcaacactctttcgtcaggcatgaccagaaggcacttgatgatttatacacatatgcaatttcaatcactgatgcagaagctcttaaaagctctaatgtaagccacctacctgaaatgttcctttctttcaccactaattgtaaagatatcacatttaacaggaaaatctgggttcacatctcccaacctgtccctatgtcattaagcctacatgacatacaacaggctattcggctagacactcaaatgcaagaagaaacattcaatgttgcagttcaagtattagcagcggatgagatacagagatttggaggaactgattttgtaggctggagacatttcttaaatcaagattttgcaatgtttgcaacagctggtgatgaccagtggaacccagaggatcatctcccctcattcaaagatgactccctgataccatatgacgtacctagttgccacctgatatttattccactacttcaaccactgcactattctctatacgcatttgatatggagaaaaaaaaattatgcattcttgacccactgagagacgcctcgaaaagatcagaggatacagcagaaagacacttAaaaacaaaatttcacatttcatctgctctgaaggagtgcatgaagcttgcatttccagattgggacgaggatataccaaactgggtttctgagttcccttcggccatcccagctataaacaacaggctggaatgtgcctttcacgtgctctactacatgcgaaactgggatggaactcgccttgtgAaccccccaaaatctgatcAacgagatcttcgaaaggaatttctgtccaacttattgtcattcaaaggcaacgaagctattctgccggacttcgtcgttcactgcctgaagttatctaacaagatctga
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| Protein seq | MPLTNPEKVMQCTKLPLRMEFLSVLYVERDEWGRIFMREEYACTKLPPKSKRELSARSIKPSHSVKSPFLSKQHSFVRHDQKALDDLYTYAISITDAEALKSSNVSHLPEMFLSFTTNCKDITFNRKIWVHISQPVPMSLSLHDIQQAIRLDTQMQEETFNVAVQVLAADEIQRFGGTDFVGWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYAFDMEKKKLCILDPLRDASKRSEDTAERHLKTKFHISSALKECMKLAFPDWDEDIPNWVSEFPSAIPAINNRLECAFHVLYYMRNWDGTRLVNPPKSDQRDLRKEFLSNLLSFKGNEAILPDFVVHCLKLSNKI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0009310 | OsCMeo_03g0009310.02 | Chr03 | 6655455 | 6658928 | + | NAM | ||
| CDS seq | atgcctctgacaaatccggagaaggtaatgcaatgcacaaaactccctcttcgcatggagtttctctccgtactctatgttgaaagagacgagtggggcaggattttcatgcgtgaggagtacgcatgtacaaagctcccacctaaatccaagagagaattatcggcgaggtcgattaaaccaagccattcagtgaaatcaccatttctgagcaagcaacactctttcgtcaggcatgaccagaaggcacttgatgatttatacacatatgcaatttcaatcactgatgcagaagctcttaagaaaatctgggttcacatctcccaacctgtccctatgtcattaagcctacatgacatacaacaggctattcggctagacactcaaatgcaagaagaaacattcaatgttgcagttcaagtattagcagcggatgagatacagagatttggaggaactgattttgtaggctggagacatttcttaaatcaagattttgcaatgtttgcaacagctggtgatgaccagtggaacccagaggatcatctcccctcattcaaagatgactccctgataccatatgacgtacctagttgccacctgatatttattccactacttcaaccactgcactattctctatacgcatttgatatggagaaaaaaaaattatgcattcttgacccactgagagacgcctcgaaaagatcagaggatacagcagaaagacacttAaaaacaaaatttcacatttcatctgctctgaaggagtgcatgaagcttgcatttccagattgggacgaggatataccaaactgggtttctgagttcccttcggccatcccagctataaacaacaggatcAacgagatcttcgaaaggaatttctgtccaacttattgtcattcaaaggcaacgaagctattctgccggacttcgtcgttcactgcctga
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| Protein seq | MPLTNPEKVMQCTKLPLRMEFLSVLYVERDEWGRIFMREEYACTKLPPKSKRELSARSIKPSHSVKSPFLSKQHSFVRHDQKALDDLYTYAISITDAEALKKIWVHISQPVPMSLSLHDIQQAIRLDTQMQEETFNVAVQVLAADEIQRFGGTDFVGWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYAFDMEKKKLCILDPLRDASKRSEDTAERHLKTKFHISSALKECMKLAFPDWDEDIPNWVSEFPSAIPAINNRINEIFERNFCPTYCHSKATKLFCRTSSFTA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0009310 | OsCMeo_03g0009310.04 | Chr03 | 6655455 | 6658928 | + | NAM | ||
| CDS seq | atggcgacaatgaacagcacccccgacattgcacctttgcagtcctgcagcaggtgcgaatgtttcaggtgtggtggctctaagcccttcatgctgctcaagcaagaaagatgcatcagcggaagcagctacctgcaaaaagagctagtgaaacagatggagttttatGggttgctttccatgaggctgactaaactgaacaagcaattcggagcatggattctgtgcaagctagacccatcatcaggtaatctgtttgcgggatctagacatgaaatttgtttgacatgtgaggatgtcagcctacttttgggaatcccttgtggacggaaggagattttgcctgcaatAaaaaacgagaaagattcctttgatggacttaccattgtaacaattcagaggatattggagaaaaaatttaacaggacgatgactgttcacgaacagattgtattcaagactgcttttAtaatcttcgttgtaaccaaattcttggctcctcaatctgttaacaatcacatatctataaggtatatgaaggctttggttgatgtagaaaatAttcacaagtacaactgggcggaatttgttttgcatgacatcaaagatgcagcagcaacattgcaacacaaaatacgccatcgaaaaagcattggttacatcaatggctgcattatactacctcagcttttttatctggacaatctggatttcgggacggacactcccgagcaggaaaacattccaaggattggcgtgtacaatgactccatgatagcagaattcattgagagggataaccggaatcctttccccgcgtatggaaagatgaagctgcgaaacaaacatgatgaaaaatacaatcttggccatcatacgggtgcaatagaggctatccatgtggatcgtacctacgatgccaggtctgacatcgagcccccaagctttaatctaggaataacacaagatatcgaagaagcaaacatggtggcatgtaccccaggtcatgacatctccaatgtggctgaagactctgacaagaacaagaactcaactttttag
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| Protein seq | MATMNSTPDIAPLQSCSRCECFRCGGSKPFMLLKQERCISGSSYLQKELVKQMEFYGLLSMRLTKLNKQFGAWILCKLDPSSGNLFAGSRHEICLTCEDVSLLLGIPCGRKEILPAIKNEKDSFDGLTIVTIQRILEKKFNRTMTVHEQIVFKTAFIIFVVTKFLAPQSVNNHISIRYMKALVDVENIHKYNWAEFVLHDIKDAAATLQHKIRHRKSIGYINGCIILPQLFYLDNLDFGTDTPEQENIPRIGVYNDSMIAEFIERDNRNPFPAYGKMKLRNKHDEKYNLGHHTGAIEAIHVDRTYDARSDIEPPSFNLGITQDIEEANMVACTPGHDISNVAEDSDKNKNSTF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0009310 | OsCMeo_03g0009310.01 | Chr03 | 6655455 | 6658928 | + | NAM | ||
| CDS seq | atggcgacaatgaacagcacccccgacattgcacctttgcagtcctgcagcaggtgcgaatgtttcaggtgtggtggctctagtttgtttttcactagagcccttcatgctgctcaagcaagaaagatgcatcagcggaagcagctacctggttctgcagtatcaaattccaaaaaaacaagtggcatcaagggtaaaaagaggatattggagaaaaaatttaacaggacgatgactgttcacgaacagattgtattcaagactgcttttAtaatcttcgttgtaaccaaattcttggctcctcaatctgttaacaatcacatatctataaggtatatgaaggctttggttgatgtagaaaatAttcacaagtacaactgggcggaatttgttttgcatgacatcaaagatgcagcagcaacattgcaacacaaaatacgccatcgaaaaagcattggttacatcaatggctgcattatactacctcagcttttttatctggacaatctggatttcgggacggacactcccgagcaggaaaacattccaaggattggcgtgtacaatgactccatgatagcagaattcattgagagggataaccggaatcctttccccgcgtatggaaagatgaaggctatccatgtggatcgtacctacgatgccaggtctgacatcgagcccccaagctttaatctaggaataacacaagatatcgaagaagcaaacatggtggcatgtaccccaggtcatgacatctccaatgtggctgaagactctgacaagaacaagaactcaactttttag
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| Protein seq | MATMNSTPDIAPLQSCSRCECFRCGGSSLFFTRALHAAQARKMHQRKQLPGSAVSNSKKTSGIKGKKRILEKKFNRTMTVHEQIVFKTAFIIFVVTKFLAPQSVNNHISIRYMKALVDVENIHKYNWAEFVLHDIKDAAATLQHKIRHRKSIGYINGCIILPQLFYLDNLDFGTDTPEQENIPRIGVYNDSMIAEFIERDNRNPFPAYGKMKAIHVDRTYDARSDIEPPSFNLGITQDIEEANMVACTPGHDISNVAEDSDKNKNSTF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0009310 | OsCMeo_03g0009310.03 | Chr03 | 6655455 | 6658928 | + | NAM | ||
| CDS seq | atgcctctgacaaatccggagaaggtaatgcaatgcacaaaactccctcttcgcatggagtttctctccgtactctatgttgaaagagacgagtggggcaggattttcatgcgtgaggagtacgcatgtacaaagctcccacctaaatccaagagagaattatcggcgaggtcgattaaaccaagccattcagtgaaatcaccatttctgagcaagcaacactctttcgtcaggcatgaccagaaggcacttgatgatttatacacatatgcaatttcaatcactgatgcagaagctcttaaaagctctaatgtaagccacctacctgaaatgttcctttctttcaccactaattgtaaagatatcacatttaacaggaaaatctgggttcacatctcccaacctgtccctatgtcattaagcctacatgacatacaacaggctattcggctagacactcaaatgcaagaagaaacattcaatgttgcagttcaagtattagcagcggatgagatacagagatttggaggaactgattttgtaggctggagacatttcttaaatcaagattttgcaatgtttgcaacagctggtgatgaccagtggaacccagaggatcatctcccctcattcaaagatgactccctgataccatatgacgtacctagttgccacctgatatttattccactacttcaaccactgcactattctctatacgcatttgatatggagaaaaaaaaattatgcattcttgacccactgagagacgcctcgaaaagatcagaggatacagcagaaagacacttAaaaacaaaatttcacatttcatctgctctgaaggagtgcatgaagcttgcatttccagattgggacgaggatataccaaactgggtttctgagttcccttcggccatcccagctataaacaacaggctggaatgtgcctttcacgtgctctactacatgcgaaactgggatggaactcgccttgtgAaccccccaaaatctgatcAacgagatcttcgaaaggaatttctgtccaacttattgtcattcaaaggcaacgaagctattctgccggacttcgtcgttcactgcctgaagttatctaacaagatctga
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| Protein seq | MPLTNPEKVMQCTKLPLRMEFLSVLYVERDEWGRIFMREEYACTKLPPKSKRELSARSIKPSHSVKSPFLSKQHSFVRHDQKALDDLYTYAISITDAEALKSSNVSHLPEMFLSFTTNCKDITFNRKIWVHISQPVPMSLSLHDIQQAIRLDTQMQEETFNVAVQVLAADEIQRFGGTDFVGWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYAFDMEKKKLCILDPLRDASKRSEDTAERHLKTKFHISSALKECMKLAFPDWDEDIPNWVSEFPSAIPAINNRLECAFHVLYYMRNWDGTRLVNPPKSDQRDLRKEFLSNLLSFKGNEAILPDFVVHCLKLSNKI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 6657292 | 6657416 | + | OsCMeo_03g0009310.01,OsCMeo_03g0009310.04 | OsCMeo_03g0009310.04,OsCMeo_03g0009310.01,OsCMeo_03g0009310.03,OsCMeo_03g0009310.02 | All |
| A3 | Chr03 | 6655510 | 6655708 | + | OsCMeo_03g0009310.02,OsCMeo_03g0009310.03 | OsCMeo_03g0009310.02,OsCMeo_03g0009310.01,OsCMeo_03g0009310.03,OsCMeo_03g0009310.04 | All |
| A3 | Chr03 | 6655827 | 6655953 | + | OsCMeo_03g0009310.02,OsCMeo_03g0009310.03 | OsCMeo_03g0009310.02,OsCMeo_03g0009310.03,OsCMeo_03g0009310.04 | All |
| A3 | Chr03 | 6657689 | 6657829 | + | OsCMeo_03g0009310.03 | OsCMeo_03g0009310.02,OsCMeo_03g0009310.01,OsCMeo_03g0009310.03,OsCMeo_03g0009310.04 | All |
| RI | Chr03 | 6656638 | 6656795 | + | OsCMeo_03g0009310.02,OsCMeo_03g0009310.03 | OsCMeo_03g0009310.02,OsCMeo_03g0009310.01,OsCMeo_03g0009310.03,OsCMeo_03g0009310.04 | All |
| SE | Chr03 | 6656795 | 6657026 | + | OsCMeo_03g0009310.02,OsCMeo_03g0009310.03,OsCMeo_03g0009310.04 | OsCMeo_03g0009310.02,OsCMeo_03g0009310.01,OsCMeo_03g0009310.03,OsCMeo_03g0009310.04 | All |
| SE | Chr03 | 6658551 | 6658801 | + | OsCMeo_03g0009310.03 | OsCMeo_03g0009310.02,OsCMeo_03g0009310.01,OsCMeo_03g0009310.03,OsCMeo_03g0009310.04 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g12480 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0009380 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026390 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0032690 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0033130 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0033130 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025430 | SBH | 0.453954 | 2.551353 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025330 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025500 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
