Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0037830 | OGI:02097250 | 4/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:35098524-35107482 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagactgcttgttgaatcttttctataggtttttcatagtctgatacggtgtactgcacatgctatgagaaaacccaataagtatagctatctatatgttttttttttgacgaattcagcgaatggtaataactcagtcttaactagataaaactatgttctctcttgcatgacaactatagggctaactgaagaacctggatttttcagggaataatagtatatgttgcataccggcaatcccaaaatgttgcaatgaagaaactcatatgttacatactgcagaccccaaattcatgaatacaactttgggcaactttgagaatttaatcaagaataggtactgttaatgctatcctgtgtttgtcaacgacaattatagttctgaatattttttcacctccgagtatacatataggttatataacccactgctactctattttttagatttgtttgtgacttgtttttcccactgcccacatagatcctgatttcactgttaaaaatccatgttttccagccctacacctgcatgatctgggtagagtggaaaaaacgaaaaaaaaatccaagctgatcgaatttgatttttctattttcatctgtacctgtgaataatggatcatagcattagggttggatgctacagggagacagatctcggatgtgtcatgtattccatgatgcaaggtcgatgttggctattgtctcggcgtttcgaatagagaaggttaatagaagagaatgtaatggtgtagcttttttgggcatgatgtataacatgaacctttaactcaactgatttaagggtaggatgcattttttaacggaattgctaaccttctttcgacagattttgcatccccaaattaatcttgcagattttgggacactggatgggcttcgatattcgtgctccacgccttctcctccaactctagcgacctcctcttcttctttggtgccggcgaggaccctacgggttagggtcctggggtggggtgggggtgggaggggggaggggaggagttcgccggctctaaagggatggctgtggaaggcggcagcccaacggtgggcggcggatcgggcaggtggcgaggcaccggcggcggcaccggagctgcagggctggaggagggtggtgggccggtgtcggtggcaagggcacctcgtcgccgacggctcgaggaggaagaaggggaagaggctggtcgggggggggggtctcgccggcgccgttgatgccctcccgccagccgacgaggcgggcggcggcgcggtggtggcgggggatcgggcggagccgctcgccagcgcgatgggaggggaacgggaggaggagaggttgagattttgtcaacagatgtatagatagccccttttttttaatttacttcattcaatgtatgtcgacgtgccttgcacgtgcacgctaactagtgcatggaaaaagtaggccgtttcctgttatcaaatacttcctccattctaaattgatctacatatagttttttttagattattcctaaatgatctacatatttgtgttcattcattaagtctattcgttatttatgcattggagtaaatggacattgatgcatgcatccatgtacataagtatttataacccacatgcaatatcttaaatggacattggctaggaaatagtggggatggtgcatgcatcgagtttgttgctagagtaaatatagtatgagagagttattagctttttttggtcttggtgtacctatgaaatatgtagatcaatttggaatggagggagtatagcacacgtacaggggatcgctaattagcgcatatgcgcgaattgctttcctggcgcacacgtacatgtgacgagcatagatggacggtgtcgtcagaaacggaaaacgggaaaaaaacgtgattagcaccagtaatttaagagggcagctagcccacgggataccgtggaaaagtgaagtcacgggacaatttttacgtgtgattaattagcgtacaacatgttgtaccacaggtaccaggtatcacaagtatcaggtaccaggtgtcacaggtatcaggtaccaggtataacatataccaagtgccaggtatcacaggtaccaggtgccaggtatcaggtatcatgtgtcataggtattaggtaccaaatgtcacaggtatcaggtaccaggtatcacatgtaccaagtgccagatatcacaggtaccaggtgccaggtatcaggtatcatgtgtcacatgtatcaggtaccagctgtcacaagtaccaggtaccatgcaactggtaccatactggtatcagctggtatcagcatagcggcggaaaagcgaacaccagtcaaaaagagaaaaaaaataaaatctatgttacataatatcattgtgtcaattaatttacatgacatactaaatctcaatgtgtctcactcaagaaaagaaacaaagcaagaaaaggagaaaacgaaaaattaaaaatgaccgtggtatatagaagatgtaagtcaagcctacagaggtgcatgcccaaattgattcacatggcccaagtgcccaaccaatatatctagagtccttgtgctgcaggaagaacacatacacgtggatgtgttgtggagtatagacctgccacttagtaggaaattgtgtcgcatgcgtgtacaattgttttgatggaaataacgtagaccttttaagtcatcccgtaggaacgggatgccgttctagattttctggtaatttaatagcgcgtgcgtctggtcccctcccgcgtcctattttttttcttttacgattttttttctttcacaatttttctttccttttgcgcttttttctgattatttttttaatcttcaacacacgtattttcgaatgttttgagttgaaaagtttttaaatcttaacttgaaaatttttaaatcttaacttaaaaaattttcaaatccaagttgaaagttttcaaatcttgagttgaaagttttcaaatctcaaacctaatcgccgtcggcgcccgacgcccggcgatgtcgcagctgccgacgttccggatggcccagtcgagcacgacgggcacggcgaagtcgctggttcggttgaagaaggcgcgatagctgtagttggtgttgatccacctgtcctccgccacgaacacgtactggcattcagtggagtcgagatggcggaagacgggttccgtcggcgggagctcctgttggtcggggacgtttcgcgttggttcctctgtcttattcaacgtgagtatgtaaggcttgtagacgttgagagcgcggggcatggtgttctggcagcaccccgactcgccggtgcactggcccggcaagtcaccctgcgactgcgaccgccggcacgtggatgtgcagccagtgacgtacgtatagttatcgtcggcgtcaatcaagtagccaaggacggggcacccgagcacgacaaggcggttcctcttcgtggagaaccggtaggcaatgctgctaccgtagtccggcgtgcggtatagtgccccctgattgctttgaagctgtcgtcgtggcaattgcttcccgcgtctacgaggacccggacctccgtggacacttgtcgggctgagccgatgccggcaggggcgtagctaggggtagtcccggtgggcccgggactaccccaaaatctggcccagagaccccccaccccccaaaaaatttaggcccaaataggttgcttggcccaaatagcccataaacatctagggttggagggattcctaggctcccagccactcaggctcagccgcccaccagccagcgccgatagccgaccgcgcccggcgcctcctcctcaactccgcgccgccggcgccaccaccggcgtccccaccccgcaagcccgcgtctctgcgccggtgcggcgccgccacctccgtccgcaccgacaaccgtcccctcccctcctccgcgccggcgccgcgcggcctcccctccagcctcccctcctccgtgccggcgccgcgcggcctcccctccgacctccccgccgtccgcggctcctcgccgagtcgccgacgacgacgccgcgccgtgctgccgacctgccgactgccgtccgcccgtcccttccccttccgtggctcagcccactagccaggtaacaaatagatgcctaaactaaatggctagatttgtgaatttgtgattagaagatttgtgaatttgtgattagagattagttagtctgtgaataactgagaatgcaatttataaattgttactaattagtgaatgtgtgctaaatggtaattgctattgtttgtaggatctatgttgattgttggactctctatgttgtaatatttgcacatttcgaacttgcttgctaagtaagccgcttatggatgttggaagacattatttctatcgcattttcactaaatttgtatttgtatatcagttttatggtgcaagaaaattttatcatgtgacatgaacttgtgaactaggactacccaaggaaaaattcctgcctacgccactggatgccggtgtcaccggcgccaagcagacgagcatgacggctaataaggcaaccgcctgatgcagtgtactagtggtaggagaaactcttttaaacactcgggtggacgtccactcgtttcttgcatgtcatctaaatagttatgaaaaattttcaaaaaaattgacatgataggttaatatgtaatactccctccgtcccatattataagggattttgagtttttgcttgcaacctttgaccactcgtcttattcaaaTtttttgaaaataattatttattttatttgtgacttactttattatctacagtactttaagcacaactattcgttttttatatttgcaaaaaaaaatttgaataagacgaatgatcaaacgttgcaagcaaaaactcaaaaatcccttatattgtgggacggagggagtatatcacttcacaaacatgcaagttcaaattcgacttctacaaattgtaacaaaaataataaatttgactgtgaatatacgtatactagttagagtttgatttgttatttttgttacaacttgtagaagtcgaatttgaacttacatgtttgtgaagtgatatattacatattaacctatcttgtgtttttttttaaaattttttcataattatttaggtgacatacaaaaaacgggtggacgttcacccgagagattagaatccatcctcgtagtggtagccatttctgacatgtaatcgccttcgttgttctgcttgctgtcttgcttttacatgccgggcttgatatccatataaatataaatagatcgcgcacaagcttccttcgttaattagttggagggctaatatgtcaagatcaggaagatgtgtcatggaagctgcgtcgtgtattaggagttgactgaaagtacacgcggcgacgtgttcttttcttacagggcgcgctgtgtcttgtagtattattagttgactagaaagtacacgctgctttgccgcgtgaggcctgccagtggtttcaaatccaccccgcacctacaccaacccaaaaacaactacactagcccacccaatccaaaccaacccacaaaatacacgcgatccaatccaatccgcaagttgttctccacaggcaacccatggattctacccacagcctgtttggttggggggagtttttagaagggattgggagtttagagggatgaggctattaactgttttatttggttgggagacatgggaattttggtgggatggggatggggatggggaattgaggaatgaactccctccttttcaatactgggtagggggtggtaattgggagggaattcttcctttactttgcctaaacaaatctcagccttccgttttcattaatgacctaatctccaactaaacttcctatcaatttccaccacctctaccaaacaagagactggaatgaaaaatcaaattcccatcttaatctcaccatcaattccctcgtgtaaactcctaatccccttccctcaagttcccaaacaagccgccatggcacacagccggctaaccaaaacacacagccacacatagataccatagtcactctggccgcatacataggtagttcgtaccatagtcaaagcagtatgcgtaccatagtttactttctaatttataaattgtcatcaaatttgaaagtagcaacgaaaattaacttagcacaactaaaattagctaggcaatttgtacaacactttaccaatattatacgaactatcatggtgtctcgtgcagatagcgtggctagcatcattatattttctctcatataatagcatatatgttttatcaatgtattattcaaatatattaaaatgacaacataattttaaattttgtactaactttataaaactactaatgtgtaatattcatattgttttttatacatgtgttagttattaattatttttaatattaaattttagttatttgtaaattatattcctatatgtactttagactcgtctttcaatatttttttaattccgaattttcattatatgtaaattgtatttctatatagattctaggctcttcttctaatattagttaattttaattctgaatctttattatttctaattatatttctatgtggactctaaactcatctttcaatattatttaatttttaatttcgaatttcagttacttctaaattgtattcgtatattgactttagactcttctttccatgttttttttaatttcgaattttacttatttataaattgtatttttatacgaactctaaatctacttttaattttattatgtttatttcaaattttagttagttttaaattcctatatggactctatactctacttctaatattccttatttttaattccgattttatgttattttttaattgtatttctatatggactctatactctacttctaatattccttatttttaattccgaatttctattatttcttaattgtatttctatatggactctaatcttctcttccaatattccttattttttaattccgaattttaactatttctaaattgtatttctatatggactctgtttttctttttctccgattaatatgagaatttctaggccgtgagagcgaacgtagaggcttctttttctattcctttaataagttaatagatagatagttgaacatgcataagcatgctacttctgcagctcaaatcagttagcatgcaagctatgatcctctgatgtaattgcttgatgtggttatccccacaaccaaaaaggtggttctactctcttgatgctcatccatctcaggtgctttgatttgtaatagcatcaacacaaactacttcagtatgtaaatggtgggttcaaaactcaaacaaacaagcattgtagattttctggttcagtttactaaactggaagcaagaatcaggtttcagtaaagattcaataatactgataccataaaatttaagtgtaaaatatcaacttagagctaaaatccatcatacaaaaaactactaccttttcggaccatcatactttagaataagttagtgtacaaaaataaatgatatggccacatagacaagcatcagctaccaactgcattacaattttcaagttactttgagaataatcatgcaaactatagagaccaagttttcttacaagctaagaaggaaacaatgttactttgttagtctagctagtagtagatatgcaaaaattatacatttaattaccttgtttcttcggtttaaataaccaatctttagcacaagccagtgcctcaagcatatcaggtgtcaatgaacttcttgtgtctccaagtatccttcctccacaactaaaagctgattccgaaggcacaatgctgaatggaattgctagaaaatcctgagccataattgccagtataggaaaccttttagcatttctcttccaccaagccaaaacatcgaaatccttgctatcatcctcacaaacttcttctaaatatgtctcaatctcagacttatgtaatcgtgttcggtttgacttaaaaatagcaaactcttggtcaagctttcttttgcctagaactggcgagcctacagcagttgcttctccttgctctgaatgtgatagggaggacacaccccttctccttgcaattccttcatatactctgaagtatgacttcatccgctctataacaaaatccactttagtttcagcttcattcatattgggagacaccttggcataaaagaattccaaataatctcgtttccttcttggatctaagacagtgctaatgacaagtgccaaattaaaattgtttggcaatttttcatcccaatacttagcaaacttcgtatgcatagcactagctaattgagtcaaaacactagttgtttgccaatcaaaatcacttaaagcatggcgaatgcaaagaaccaagtggaaaactagatgagccagctcaattgaacctatgttaacctggaacatcatataatcgatggatatatatgaatggcttcaaatgtttgctactgacaagtaattttagatacattaaaaatgtctcaagatctctaaatagttaaacctaatacacttggatatatatgtaatgtttattacacagacataaaccgtttaagagcttgaataatcgaagcatttgataaatctccatttcatttctctggtaaaatagaatggctaacggacgagtctatgcactgaatgctactacttttctccacatatatatgccaaaaattattggtctgcattatttgtatagcgaaagatttttacctattggttgaatcaaatgttgatctgtatcttgttcttcatcttgttggttgaatcaaacgttgatcagtatcttgttcttcat
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| CDS seq | atgaagaacaagatactgatcaacgtgcggggtggatttgaaaccactggcaggcctcacgcggcaaagcagcgttgggctgagccacggaaggggaagggacgggcggacggcagtcggcaggtcggcagcacggcgcggcgtcgtcgtcggcgactcggcgaggagccgcggacggcggggaggtcggaggggaggccgcgcggcgccggcacggaggaggggaggctggaggggaggccgcgcggcgccggcgcggaggaggggaggggacggttgtcggtgcggacggaggtggcggcgccgcaccggcgcagagacgcgggcttgcggggtggggacgccggtggtggcgccggcggcgcggagttgaggaggaggcgccgggcgcgcattgcctaccggttctccacgaagaggaaccgccttgtcgtgctcgggtgccccgtccttggctacttgattgacgccgacgataactatacgtacgtcactggctgcacatccacgtgccggcggtcgcagtcgcagggtgacttgccgggccagtgcaccggcgagtcggggtgctgccagaacaccatgccccgcgctctcaacgtctacaagccttacatactcacgttgaataagacagaggaaccaacgcgaaacgtccccgaccaacaggagctcccgccgacggaacccgtcttccgccatctcgactccactgaatgccagtacgtgttcgtggcggaggacaggtggatcaacaccaactacagctatcgcgccttcttcaaccgaaccagcgacttcgccgtgcccgtctacaccgtatcagactatgaaaaacctatagaaaagattcaacaagcagtctag
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| Protein seq | MKNKILINVRGGFETTGRPHAAKQRWAEPRKGKGRADGSRQVGSTARRRRRRLGEEPRTAGRSEGRPRGAGTEEGRLEGRPRGAGAEEGRGRLSVRTEVAAPHRRRDAGLRGGDAGGGAGGAELRRRRRARIAYRFSTKRNRLVVLGCPVLGYLIDADDNYTYVTGCTSTCRRSQSQGDLPGQCTGESGCCQNTMPRALNVYKPYILTLNKTEEPTRNVPDQQELPPTEPVFRHLDSTECQYVFVAEDRWINTNYSYRAFFNRTSDFAVPVYTVSDYEKPIEKIQQAV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0037830 | OsCMeo_02g0037830.01 | Chr02 | 35098524 | 35107482 | - | NAM | ||
| CDS seq | atgaagaacaagatactgatcaacgtgcggggtggatttgaaaccactggcaggcctcacgcggcaaagcagcgttgggctgagccacggaaggggaagggacgggcggacggcagtcggcaggtcggcagcacggcgcggcgtcgtcgtcggcgactcggcgaggagccgcggacggcggggaggtcggaggggaggccgcgcggcgccggcacggaggaggggaggctggaggggaggccgcgcggcgccggcgcggaggaggggaggggacggttgtcggtgcggacggaggtggcggcgccgcaccggcgcagagacgcgggcttgcggggtggggacgccggtggtggcgccggcggcgcggagttgaggaggaggcgccgggcgcgcattgcctaccggttctccacgaagaggaaccgccttgtcgtgctcgggtgccccgtccttggctacttgattgacgccgacgataactatacgtacgtcactggctgcacatccacgtgccggcggtcgcagtcgcagggtgacttgccgggccagtgcaccggcgagtcggggtgctgccagaacaccatgccccgcgctctcaacgtctacaagccttacatactcacgttgaataagacagaggaaccaacgcgaaacgtccccgaccaacaggagctcccgccgacggaacccgtcttccgccatctcgactccactgaatgccagtacgtgttcgtggcggaggacaggtggatcaacaccaactacagctatcgcgccttcttcaaccgaaccagcgacttcgccgtgcccgtctacaccgtatcagactatgaaaaacctatagaaaagattcaacaagcagtctag
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| Protein seq | MKNKILINVRGGFETTGRPHAAKQRWAEPRKGKGRADGSRQVGSTARRRRRRLGEEPRTAGRSEGRPRGAGTEEGRLEGRPRGAGAEEGRGRLSVRTEVAAPHRRRDAGLRGGDAGGGAGGAELRRRRRARIAYRFSTKRNRLVVLGCPVLGYLIDADDNYTYVTGCTSTCRRSQSQGDLPGQCTGESGCCQNTMPRALNVYKPYILTLNKTEEPTRNVPDQQELPPTEPVFRHLDSTECQYVFVAEDRWINTNYSYRAFFNRTSDFAVPVYTVSDYEKPIEKIQQAV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.179479 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0807200 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g56350 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0807200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0037920 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0038240 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0037460 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0037610 | SBH | 0.457332 | 2.967170 | 2.409071 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0564500 | SBH | 1.666801 | 11.6920945 | 2.845836 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0037300 | SBH | 0.038682 | 0.386035 | 0.225111 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0595400 | SBH | 0.3729745 | 11.9574075 | 0.8325785 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0037580 | SBH | 0.014462 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0037510 | SBH | 0.027594 | 1.515061 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0037630 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0037610 | SBH | 0.062245 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0037270 | SBH | 0.012833 | 2.010251 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G037890 | SBH | 0.081784 | 0.000000 | 0.136404 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0037750 | SBH | 0.000000 | 5.204545 | 1.877155 |
