Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0025090 | OGI:02069290 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:24945015-24946738 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaacaactcagccaaggcttctgtacatcatctgctgttgccaaaaagagaagctcttgaaatagacatggcaaattaccttaaattgccaatcgcccgatgtctcctcttgctgttctgctcatatcttccagcgatagtttcaagccatgcggctcacccacaacaacctgacagcttcccaaacgagcggctctaccgcgcgtacctcgtcatccagcggttcaagagcaccatcacgtccgaccccaagaacgtcacagcctcttggacaggccatgacatctgcggcgagaaatcctacctcggcttctactgcgcgacaccaacagggagatccgacgacctcacagtcaccgggatcatttggaacggctacggcatgcgtgcgccgaagctgcaaggattcctcgaccagctcccagatcttgcacttttccatgctgcgtccaattactttggtagcgacatccctcgcctcaacgccgtcccgtacttgtacaatctcaatgtcgatagggatgccctggctcatcctcaggccgaaggtaagctaactggtgactcacgcattcacactccatgcattaatggcgagattcacttcataatcaaagtcatcacggacctccccaagaagaagtggggcggctggggtaagactccggcaggtgccaccaatgcaagggctctccttctcaactacaacagcctatcagggccacttccggcaaatttaggcgcctccaagctgagctacctcgccctcgccaataacgagctcacgggatcaatccccccatcaattgcgcaggcgcaagattctctcctcgagatgcttctcctgaacaaccagctctccgggtgcctcccgcacgagctcggcatgctcaccaaagctgcagtgatcgacgccggcatgaaccagctcaccggcccgatcccatcctccttctcatgcctcaccagcgtcgagcagctcaacctgggcggcaaccgcctctacggagagatccccgacgcgctctgcaagctcgccgtcggcccagccggccgcctcgccaacctcacgctgtcgagcaactacttcacgtcggtcgggccggcgtgcttgtcgctgatcaaggacggcgtcctcaacgtcaagaacaactgcattccgggcttcaccaaccagcggcggccggcggagtgcgcgtcgttccacagccagccgaagacgtgcccggcggcgagcgccacccatgtggcgtgccccgccggagctgccgacgccgcggcggcgccggcggatagggtggcaaaggactactccagctacgtgacgtacgctacacttcacaagtgaggcttgcatgcatgcagtaggggacagctagaagctagcgtctcagtggtatttgcctttgtattcttgtgtttgtttggtgtgctcgtgagtcgtcattgtggtttgttttctctgcacgtgtggctagctatggctggcacgtctagatctcacctcttgtactcttgtgtatctgtactatgtgaaaatcattggtgattaccaaagtttggtgtgtgccctgccctacatgtttgataaagtttacatcatgtaaagcgtatctttcaaaataacatcatgtaaagcaccaaaatgtcggtggcatcgggaacatggggctgaacatatcacgtactgtacgtctgtacgctatttttaaagactgtcaccc
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| CDS seq | atggcaaattaccttaaattgccaatcgcccgatgtctcctcttgctgttctgctcatatcttccagcgatagtttcaagccatgcggctcacccacaacaacctgacagcttcccaaacgagcggctctaccgcgcgtacctcgtcatccagcggttcaagagcaccatcacgtccgaccccaagaacgtcacagcctcttggacaggccatgacatctgcggcgagaaatcctacctcggcttctactgcgcgacaccaacagggagatccgacgacctcacagtcaccgggatcatttggaacggctacggcatgcgtgcgccgaagctgcaaggattcctcgaccagctcccagatcttgcacttttccatgctgcgtccaattactttggtagcgacatccctcgcctcaacgccgtcccgtacttgtacaatctcaatgtcgatagggatgccctggctcatcctcaggccgaaggtaagctaactggtgactcacgcattcacactccatgcattaatggcgagattcacttcataatcaaagtcatcacggacctccccaagaagaagtggggcggctggggtaagactccggcaggtgccaccaatgcaagggctctccttctcaactacaacagcctatcagggccacttccggcaaatttaggcgcctccaagctgagctacctcgccctcgccaataacgagctcacgggatcaatccccccatcaattgcgcaggcgcaagattctctcctcgagatgcttctcctgaacaaccagctctccgggtgcctcccgcacgagctcggcatgctcaccaaagctgcagtgatcgacgccggcatgaaccagctcaccggcccgatcccatcctccttctcatgcctcaccagcgtcgagcagctcaacctgggcggcaaccgcctctacggagagatccccgacgcgctctgcaagctcgccgtcggcccagccggccgcctcgccaacctcacgctgtcgagcaactacttcacgtcggtcgggccggcgtgcttgtcgctgatcaaggacggcgtcctcaacgtcaagaacaactgcattccgggcttcaccaaccagcggcggccggcggagtgcgcgtcgttccacagccagccgaagacgtgcccggcggcgagcgccacccatgtggcgtgccccgccggagctgccgacgccgcggcggcgccggcggatagggtggcaaaggactactccagctacgtgacgtacgctacacttcacaagtga
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| Protein seq | MANYLKLPIARCLLLLFCSYLPAIVSSHAAHPQQPDSFPNERLYRAYLVIQRFKSTITSDPKNVTASWTGHDICGEKSYLGFYCATPTGRSDDLTVTGIIWNGYGMRAPKLQGFLDQLPDLALFHAASNYFGSDIPRLNAVPYLYNLNVDRDALAHPQAEGKLTGDSRIHTPCINGEIHFIIKVITDLPKKKWGGWGKTPAGATNARALLLNYNSLSGPLPANLGASKLSYLALANNELTGSIPPSIAQAQDSLLEMLLLNNQLSGCLPHELGMLTKAAVIDAGMNQLTGPIPSSFSCLTSVEQLNLGGNRLYGEIPDALCKLAVGPAGRLANLTLSSNYFTSVGPACLSLIKDGVLNVKNNCIPGFTNQRRPAECASFHSQPKTCPAASATHVACPAGAADAAAAPADRVAKDYSSYVTYATLHK |
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| Function | Uncharacterized protein At4g06744 [UniProtKB/Swiss-Prot:Q8W3M4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0025090 | OsCMeo_02g0025090.01 | Chr02 | 24945015 | 24946738 | + | NAM | ||
| CDS seq | atggcaaattaccttaaattgccaatcgcccgatgtctcctcttgctgttctgctcatatcttccagcgatagtttcaagccatgcggctcacccacaacaacctgacagcttcccaaacgagcggctctaccgcgcgtacctcgtcatccagcggttcaagagcaccatcacgtccgaccccaagaacgtcacagcctcttggacaggccatgacatctgcggcgagaaatcctacctcggcttctactgcgcgacaccaacagggagatccgacgacctcacagtcaccgggatcatttggaacggctacggcatgcgtgcgccgaagctgcaaggattcctcgaccagctcccagatcttgcacttttccatgctgcgtccaattactttggtagcgacatccctcgcctcaacgccgtcccgtacttgtacaatctcaatgtcgatagggatgccctggctcatcctcaggccgaaggtaagctaactggtgactcacgcattcacactccatgcattaatggcgagattcacttcataatcaaagtcatcacggacctccccaagaagaagtggggcggctggggtaagactccggcaggtgccaccaatgcaagggctctccttctcaactacaacagcctatcagggccacttccggcaaatttaggcgcctccaagctgagctacctcgccctcgccaataacgagctcacgggatcaatccccccatcaattgcgcaggcgcaagattctctcctcgagatgcttctcctgaacaaccagctctccgggtgcctcccgcacgagctcggcatgctcaccaaagctgcagtgatcgacgccggcatgaaccagctcaccggcccgatcccatcctccttctcatgcctcaccagcgtcgagcagctcaacctgggcggcaaccgcctctacggagagatccccgacgcgctctgcaagctcgccgtcggcccagccggccgcctcgccaacctcacgctgtcgagcaactacttcacgtcggtcgggccggcgtgcttgtcgctgatcaaggacggcgtcctcaacgtcaagaacaactgcattccgggcttcaccaaccagcggcggccggcggagtgcgcgtcgttccacagccagccgaagacgtgcccggcggcgagcgccacccatgtggcgtgccccgccggagctgccgacgccgcggcggcgccggcggatagggtggcaaaggactactccagctacgtgacgtacgctacacttcacaagtga
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| Protein seq | MANYLKLPIARCLLLLFCSYLPAIVSSHAAHPQQPDSFPNERLYRAYLVIQRFKSTITSDPKNVTASWTGHDICGEKSYLGFYCATPTGRSDDLTVTGIIWNGYGMRAPKLQGFLDQLPDLALFHAASNYFGSDIPRLNAVPYLYNLNVDRDALAHPQAEGKLTGDSRIHTPCINGEIHFIIKVITDLPKKKWGGWGKTPAGATNARALLLNYNSLSGPLPANLGASKLSYLALANNELTGSIPPSIAQAQDSLLEMLLLNNQLSGCLPHELGMLTKAAVIDAGMNQLTGPIPSSFSCLTSVEQLNLGGNRLYGEIPDALCKLAVGPAGRLANLTLSSNYFTSVGPACLSLIKDGVLNVKNNCIPGFTNQRRPAECASFHSQPKTCPAASATHVACPAGAADAAAAPADRVAKDYSSYVTYATLHK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.293191 | 12.173793 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0616100 | RBH | 0.0 | 0.0 | 0.572115 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g40260 | RBH | 0.0 | 0.0 | 0.090784 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0616100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0024930 | RBH | 0.0 | 0.0 | 35.122192 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0026220 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0019640 | RBH | 0.231145 | 48.706318 | 14.493510 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0024700 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024810 | RBH | 0.0 | 27.444479 | 9.825344 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0397500 | RBH | 114.713093 | 0.027717 | 0.8178675 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024650 | RBH | 0.0 | 0.0 | 0.072668 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0426700 | RBH | 69.1124935 | 0 | 2.574153 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0024870 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0024670 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0024980 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024880 | RBH | 0.0 | 0.0 | 0.396370 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0024440 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025090 | RBH | 0.0 | 1.027053 | 86.544655 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024950 | RBH | 0.0 | 0.0 | 0.455287 |
