Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g40260 | OGI:02069290 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:24372805-24374496 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTTTATCATAGACGATTTTATCGATGAACCTGAAATAGACATGGCTTGCCACTTGAGATTATTTCCCTTTACTCAACTACTAGTATTGGTTCTGTACAAAATCGCCGCCGTAGGGGCAGATCCTGCAAACGCAGAACTATCCACAAAGATCACCCAACACTCTCCATTGTACAACCCACAGCCTCAAGACTTTCCAAACGAGGAGCTCTACCGCAACTATCTAGTCATCCAGCGGTTCAAGAAGACAATCACTTCCGACCCCAAGAACATCACCGCCACCTGGACCGGCCATGACATCTGCGGCAACACGACCTACCTCGGTTTCTACTGTGCAGCATTGCCTGGGCGTACTAAGAAGCCCACGGTCACTGTGGTGATCTTTAACGGTTATGGCCTGCGTGCACCGAAGCTGGAAGGATTTATTGACCATCTCCCCGATCTTGCACTTTTCCATGCTGCCTCCAACGACTTCGGTGGTGACATCCCCTACCTCACAGGCCTCGCCTACAACTACAAGATCAATGTCGACAGCAATCTCCAAATACAGGATGATTTTAGTCGTGACATGGTCGGGTCGCATGTAACAACTAAAGTTCATGGTTATTGCGTTAATTTAGATCTAGATATCACATTTCACCTCCGGCCCGGAAAAGACGACAAGAAAGGACGAAGCATCCCCGGTGCCACAGATTCTAAGGCGCTCCTCCTCAACTACAATCACCTGTCCGGGCCATTACCGGTGAACATCGGTTTCTCCAAGTTAAGCTACCTGGCCCTCGCCAACAACAGGCTCACCGGCGCAATCCCGCCATCAATCTTGCATTTGCAAGACTCCCTCCTCGAGGTGCTCCTCCTGAACAACCAGCTCTCCGGCTGCCTCCCCCACGAGCTCGGCATGCTCACCAAGGCCGCAGTGTTCGACGCCGGCATGAACCAGCTCACCGGGCCGATCCCCTCCTCTTTCTCATGCCTCACCAGCGTCGAGCAGCTCAACCTGGGCGGCAACCGCCTCTACGGAGAGATCCCCGACGCGCTCTGCAAGCTCGCCGCCGTCCCAGCCGGCCGCCTCGCCAACCTCACGCTGTCGAGCAACTACTTCACGTCGGTCGGACCGGCGTGCTTGTCGCTGATCAAGGACGGCGTCCTCAACGTCAGGAACAACTGCATTCCGGGCTTCGCCAACCAGCGGCGGCCGGCGGAGTGCGCGTCGTTCCACAGCCAGCCGAAGGCGTGCCCGGCGGCGAGCGCCACCCACGTGGCGTGCCCCGCCGGAGCTGCCAACGCTGCGGCGGCGCCGGCGGACAGGGTGGTCAAGGACTACTCCAGCTACGTGACGTACGCCACCCTGCACGAGTGAGCCCGGCGCCACGGCACGGGCGCACGACGTGCGTGCATGCATGCAGTAGGGGACAGCTAGAAGCTAGCGTCTCGGGGTGGTATTTGCTCTTGTATTCTTGTGTTCGTTTGTTGTGCTCGTGAGTCGTCATTGTGGTTTGTTTTCTCTGCACGTGTGGCTAGCTATGGCTGTCACGTCTAGATCTCACCTCCTGTACTCTTGTGTACTGTACTATGTGAAAATCATTGGTGATTACTAAAGTTTGGTGTGTGCCCTGCCCTACATGTTTGATAAAGTTTACATCATGTAAAGCGTATCTTTCAAAATAACGGCCATATTTAGTTGCACCCAAAATA
More
|
||||||||||
| CDS seq | ATGGCTTGCCACTTGAGATTATTTCCCTTTACTCAACTACTAGTATTGGTTCTGTACAAAATCGCCGCCGTAGGGGCAGATCCTGCAAACGCAGAACTATCCACAAAGATCACCCAACACTCTCCATTGTACAACCCACAGCCTCAAGACTTTCCAAACGAGGAGCTCTACCGCAACTATCTAGTCATCCAGCGGTTCAAGAAGACAATCACTTCCGACCCCAAGAACATCACCGCCACCTGGACCGGCCATGACATCTGCGGCAACACGACCTACCTCGGTTTCTACTGTGCAGCATTGCCTGGGCGTACTAAGAAGCCCACGGTCACTGTGGTGATCTTTAACGGTTATGGCCTGCGTGCACCGAAGCTGGAAGGATTTATTGACCATCTCCCCGATCTTGCACTTTTCCATGCTGCCTCCAACGACTTCGGTGGTGACATCCCCTACCTCACAGGCCTCGCCTACAACTACAAGATCAATGTCGACAGCAATCTCCAAATACAGGATGATTTTAGTCGTGACATGGTCGGGTCGCATGTAACAACTAAAGTTCATGGTTATTGCGTTAATTTAGATCTAGATATCACATTTCACCTCCGGCCCGGAAAAGACGACAAGAAAGGACGAAGCATCCCCGGTGCCACAGATTCTAAGGCGCTCCTCCTCAACTACAATCACCTGTCCGGGCCATTACCGGTGAACATCGGTTTCTCCAAGTTAAGCTACCTGGCCCTCGCCAACAACAGGCTCACCGGCGCAATCCCGCCATCAATCTTGCATTTGCAAGACTCCCTCCTCGAGGTGCTCCTCCTGAACAACCAGCTCTCCGGCTGCCTCCCCCACGAGCTCGGCATGCTCACCAAGGCCGCAGTGTTCGACGCCGGCATGAACCAGCTCACCGGGCCGATCCCCTCCTCTTTCTCATGCCTCACCAGCGTCGAGCAGCTCAACCTGGGCGGCAACCGCCTCTACGGAGAGATCCCCGACGCGCTCTGCAAGCTCGCCGCCGTCCCAGCCGGCCGCCTCGCCAACCTCACGCTGTCGAGCAACTACTTCACGTCGGTCGGACCGGCGTGCTTGTCGCTGATCAAGGACGGCGTCCTCAACGTCAGGAACAACTGCATTCCGGGCTTCGCCAACCAGCGGCGGCCGGCGGAGTGCGCGTCGTTCCACAGCCAGCCGAAGGCGTGCCCGGCGGCGAGCGCCACCCACGTGGCGTGCCCCGCCGGAGCTGCCAACGCTGCGGCGGCGCCGGCGGACAGGGTGGTCAAGGACTACTCCAGCTACGTGACGTACGCCACCCTGCACGAGTGA
More
|
||||||||||
| Protein seq | MACHLRLFPFTQLLVLVLYKIAAVGADPANAELSTKITQHSPLYNPQPQDFPNEELYRNYLVIQRFKKTITSDPKNITATWTGHDICGNTTYLGFYCAALPGRTKKPTVTVVIFNGYGLRAPKLEGFIDHLPDLALFHAASNDFGGDIPYLTGLAYNYKINVDSNLQIQDDFSRDMVGSHVTTKVHGYCVNLDLDITFHLRPGKDDKKGRSIPGATDSKALLLNYNHLSGPLPVNIGFSKLSYLALANNRLTGAIPPSILHLQDSLLEVLLLNNQLSGCLPHELGMLTKAAVFDAGMNQLTGPIPSSFSCLTSVEQLNLGGNRLYGEIPDALCKLAAVPAGRLANLTLSSNYFTSVGPACLSLIKDGVLNVRNNCIPGFANQRRPAECASFHSQPKACPAASATHVACPAGAANAAAAPADRVVKDYSSYVTYATLHE |
||||||||||
| Function | Uncharacterized protein At4g06744 [UniProtKB/Swiss-Prot:Q8W3M4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g40260 | LOC_Os02g40260.1 | Chr02 | 24372805 | 24374496 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTTGCCACTTGAGATTATTTCCCTTTACTCAACTACTAGTATTGGTTCTGTACAAAATCGCCGCCGTAGGGGCAGATCCTGCAAACGCAGAACTATCCACAAAGATCACCCAACACTCTCCATTGTACAACCCACAGCCTCAAGACTTTCCAAACGAGGAGCTCTACCGCAACTATCTAGTCATCCAGCGGTTCAAGAAGACAATCACTTCCGACCCCAAGAACATCACCGCCACCTGGACCGGCCATGACATCTGCGGCAACACGACCTACCTCGGTTTCTACTGTGCAGCATTGCCTGGGCGTACTAAGAAGCCCACGGTCACTGTGGTGATCTTTAACGGTTATGGCCTGCGTGCACCGAAGCTGGAAGGATTTATTGACCATCTCCCCGATCTTGCACTTTTCCATGCTGCCTCCAACGACTTCGGTGGTGACATCCCCTACCTCACAGGCCTCGCCTACAACTACAAGATCAATGTCGACAGCAATCTCCAAATACAGGATGATTTTAGTCGTGACATGGTCGGGTCGCATGTAACAACTAAAGTTCATGGTTATTGCGTTAATTTAGATCTAGATATCACATTTCACCTCCGGCCCGGAAAAGACGACAAGAAAGGACGAAGCATCCCCGGTGCCACAGATTCTAAGGCGCTCCTCCTCAACTACAATCACCTGTCCGGGCCATTACCGGTGAACATCGGTTTCTCCAAGTTAAGCTACCTGGCCCTCGCCAACAACAGGCTCACCGGCGCAATCCCGCCATCAATCTTGCATTTGCAAGACTCCCTCCTCGAGGTGCTCCTCCTGAACAACCAGCTCTCCGGCTGCCTCCCCCACGAGCTCGGCATGCTCACCAAGGCCGCAGTGTTCGACGCCGGCATGAACCAGCTCACCGGGCCGATCCCCTCCTCTTTCTCATGCCTCACCAGCGTCGAGCAGCTCAACCTGGGCGGCAACCGCCTCTACGGAGAGATCCCCGACGCGCTCTGCAAGCTCGCCGCCGTCCCAGCCGGCCGCCTCGCCAACCTCACGCTGTCGAGCAACTACTTCACGTCGGTCGGACCGGCGTGCTTGTCGCTGATCAAGGACGGCGTCCTCAACGTCAGGAACAACTGCATTCCGGGCTTCGCCAACCAGCGGCGGCCGGCGGAGTGCGCGTCGTTCCACAGCCAGCCGAAGGCGTGCCCGGCGGCGAGCGCCACCCACGTGGCGTGCCCCGCCGGAGCTGCCAACGCTGCGGCGGCGCCGGCGGACAGGGTGGTCAAGGACTACTCCAGCTACGTGACGTACGCCACCCTGCACGAGTGA
More
|
|||||||
| Protein seq | MACHLRLFPFTQLLVLVLYKIAAVGADPANAELSTKITQHSPLYNPQPQDFPNEELYRNYLVIQRFKKTITSDPKNITATWTGHDICGNTTYLGFYCAALPGRTKKPTVTVVIFNGYGLRAPKLEGFIDHLPDLALFHAASNDFGGDIPYLTGLAYNYKINVDSNLQIQDDFSRDMVGSHVTTKVHGYCVNLDLDITFHLRPGKDDKKGRSIPGATDSKALLLNYNHLSGPLPVNIGFSKLSYLALANNRLTGAIPPSILHLQDSLLEVLLLNNQLSGCLPHELGMLTKAAVFDAGMNQLTGPIPSSFSCLTSVEQLNLGGNRLYGEIPDALCKLAAVPAGRLANLTLSSNYFTSVGPACLSLIKDGVLNVRNNCIPGFANQRRPAECASFHSQPKACPAASATHVACPAGAANAAAAPADRVVKDYSSYVTYATLHE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.090784 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0616100 | RBH | 0.0 | 0.0 | 0.572115 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g42620 | RBH | 0.0 | 0.268293 | 0.774426 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0616100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0026100 | RBH | 0.0 | 0.0 | 1.352666 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0026220 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025090 | RBH | 0.0 | 1.293191 | 12.173793 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0024700 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024680 | RBH | 0.0 | 0.0 | 10.001333 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0397500 | RBH | 114.713093 | 0.027717 | 0.8178675 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024650 | RBH | 0.0 | 0.0 | 0.072668 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0426700 | RBH | 69.1124935 | 0 | 2.574153 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0024870 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0024670 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0024980 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024740 | RBH | 0.121894 | 0.0 | 0.165976 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0024440 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024960 | RBH | 0.0 | 0.0 | 30.429218 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024810 | RBH | 0.306217 | 0.0 | 2.002881 |
