Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0023660 | OGI:02066240 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:23424687-23425526 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgacatcatttgctagctggatgatgaacttggcatcacgtctgccttatctagtccgaattgagatggtagatttaccaaggtgtgaatatttaccaccatttggtcaattacaacatctggaactgttgattcttaggagaatccttagcctcaggaaactgggaggagaaatttgtggtggtaatggagcattcaggaaattgagggaatttacattggcaaagatggataacctaaatgagtggatcaccaaagtatcggctaatggtgaattcatgttccccagtcttcacaagctggaaatttctcagtgtcctattttaaggttaaatccatgccttcctagagctcttgaatggagaatagaagcaagcgatcaaattatagcagatttctatcacacaggctcgtcatcgtctttggtactatcgaaaatgcatattagaagctgccgcctgctgcccaatgactggaaactgcttcagttccttcctgatcttcaggtgttggaacttacacactgttggttttacgaattgccaaagagcattgggtacctgacgacactccgatcactgcagatagatggctgcgatagcatgacgaaactatcaaaatggttggtcagtctgtcattgctacatgaattaattattactgattgtttgaatctggtatatttgccggcatttgtacaaaagcttagtgccttggagaaattggaaattaatgataatgatgcactgcagagatggtgcagaaacagcgacagctggatctcagagaatggcataaaaaacaaggtaaacgcttataacattctctgcaaataa
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| CDS seq | atggcgacatcatttgctagctggatgatgaacttggcatcacgtctgccttatctagtccgaattgagatggtagatttaccaaggtgtgaatatttaccaccatttggtcaattacaacatctggaactgttgattcttaggagaatccttagcctcaggaaactgggaggagaaatttgtggtggtaatggagcattcaggaaattgagggaatttacattggcaaagatggataacctaaatgagtggatcaccaaagtatcggctaatggtgaattcatgttccccagtcttcacaagctggaaatttctcagtgtcctattttaaggttaaatccatgccttcctagagctcttgaatggagaatagaagcaagcgatcaaattatagcagatttctatcacacaggctcgtcatcgtctttggtactatcgaaaatgcatattagaagctgccgcctgctgcccaatgactggaaactgcttcagttccttcctgatcttcaggtgttggaacttacacactgttggttttacgaattgccaaagagcattgggtacctgacgacactccgatcactgcagatagatggctgcgatagcatgacgaaactatcaaaatggttgcttagtgccttggagaaattggaaattaatgataatgatgcactgcagagatggtgcagaaacagcgacagctggatctcagagaatggcataaaaaacaaggtaaacgcttataacattctctgcaaataa
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| Protein seq | MATSFASWMMNLASRLPYLVRIEMVDLPRCEYLPPFGQLQHLELLILRRILSLRKLGGEICGGNGAFRKLREFTLAKMDNLNEWITKVSANGEFMFPSLHKLEISQCPILRLNPCLPRALEWRIEASDQIIADFYHTGSSSSLVLSKMHIRSCRLLPNDWKLLQFLPDLQVLELTHCWFYELPKSIGYLTTLRSLQIDGCDSMTKLSKWLLSALEKLEINDNDALQRWCRNSDSWISENGIKNKVNAYNILCK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0023660 | OsCMeo_02g0023660.01 | Chr02 | 23424687 | 23425526 | + | NAM | ||
| CDS seq | atggcgacatcatttgctagctggatgatgaacttggcatcacgtctgccttatctagtccgaattgagatggtagatttaccaaggtgtgaatatttaccaccatttggtcaattacaacatctggaactgttgattcttaggagaatccttagcctcaggaaactgggaggagaaatttgtggtggtaatggagcattcaggaaattgagggaatttacattggcaaagatggataacctaaatgagtggatcaccaaagtatcggctaatggtgaattcatgttccccagtcttcacaagctggaaatttctcagtgtcctattttaaggttaaatccatgccttcctagagctcttgaatggagaatagaagcaagcgatcaaattatagcagatttctatcacacaggctcgtcatcgtctttggtactatcgaaaatgcatattagaagctgccgcctgctgcccaatgactggaaactgcttcagttccttcctgatcttcaggtgttggaacttacacactgttggttttacgaattgccaaagagcattgggtacctgacgacactccgatcactgcagatagatggctgcgatagcatgacgaaactatcaaaatggttgcttagtgccttggagaaattggaaattaatgataatgatgcactgcagagatggtgcagaaacagcgacagctggatctcagagaatggcataaaaaacaaggtaaacgcttataacattctctgcaaataa
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| Protein seq | MATSFASWMMNLASRLPYLVRIEMVDLPRCEYLPPFGQLQHLELLILRRILSLRKLGGEICGGNGAFRKLREFTLAKMDNLNEWITKVSANGEFMFPSLHKLEISQCPILRLNPCLPRALEWRIEASDQIIADFYHTGSSSSLVLSKMHIRSCRLLPNDWKLLQFLPDLQVLELTHCWFYELPKSIGYLTTLRSLQIDGCDSMTKLSKWLLSALEKLEINDNDALQRWCRNSDSWISENGIKNKVNAYNILCK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.372896 | 0.000000 | 2.932611 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0597300 | RBH | 1.363957 | 1.734010 | 2.633870 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g38392 | RBH | 0.911920 | 1.085996 | 0.628870 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0597300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0023580 | RBH | 0.595633 | 2.343004 | 3.208796 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0023680 | SBH | 0.126086 | 0.529495 | 0.695703 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018620 | RBH | 0.0 | 0.0 | 0.224914 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0023360 | SBH | 0.145684 | 0.034106 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0003920 | SBH | 1.045453 | 0.000000 | 3.641723 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0380300 | RBH | 0.10876 | 1.392014 | 0.7616885 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0023040 | SBH | 0.427604 | 0.112797 | 1.775090 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0408800 | RBH | 0.2232925 | 0.603455 | 0.891848 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0023430 | RBH | 0.200741 | 0.098847 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003780 | SBH | 0.107229 | 0.917435 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004010 | SBH | 0.048300 | 0.427278 | 0.473117 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0023140 | RBH | 0.231549 | 5.761666 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G023560 | RBH | 0.275633 | 1.561063 | 1.181025 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
