Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0021440 | OGI:02060920 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:21478955-21482673 | ||||||||
| Gene Symbol | Orysa;CKL9 | ||||||||||
| DNA seq | cgcgccaaaaccaaaagagagactcctcgcctcgcctcgcctcgcgtcgcgcatggcgagccgagaccccgccgccgccttcgtctcttctcctcccgtttgctcccccgccaccaacggccgaccttaaccccgcgcccgcgcccaaccaccccgaccgcgttccggcggttgctgcaacctccccgccgccgccgccgccgccattcctccccccgcccgccggaaccaccgccgccgcgccatgcccatctcctccttgttcttcttcttcctcctcctgcagcaggaggacccctactagattcttcttctccctcttttgtcttctttcttggtacggcggcggaggaggagccgatgggcagcctttgctccaaggacagcgtcgccgaggagctcacgccgcagccgccgccggctgcggcagcggcggcggcgcccgtggggaggctgcagaagacggagagccagtcgttgaagcagctcatcacgctcaccgccaaggaggacgccgcggtggtcgcccccgtcgtgcacgccgtcatcacccgggcggagtccaacgccaaggccaagtccaacgccaaggccaagtccgccgccgccgtgccgccggtcgtcgtgatcacgtcgctcaacaagtcgtacagcaccgcgggtgcgcccgcacaccaccaccggctgtcgaccgtcgacgtcccgcaggtggtccccggcggcgtgccgcaggggttctccggcgagcacgtgatcgccgggtggccgtcgtggctgacctccgtcgccggcgaggtggtgcaggggtggctgccgcggcgcgccgacacgttcgagcggctggacaagatcgggcagggcacgtacagcaacgtgtacaaggcccgggacctggagaccggcaaggtcgtggcgctcaagcgcgtccgcttcgtcaacatggacccggagagcgtgcggttcatggcgcgggagatccacgtcctccgccgcctcgacggccaccccaacgtcgtccgcctcgagggcatcgtcacgtcgcgcctctcccacagcctctacctcgtcttcgagtacatggaccacgacctcgccggcctcgccgccacgccggggctgcgcttcacggagccgcaggtgaagtgcctcatggcgcagatcctcgccgggctgcgccactgccacgaccggggcgtgctccaccgcgacatcaagggcgccaacctgctgatcggcggcgacggcgcgctcaagatcgccgactttggcctcgccaccttcttcgacgccgccaggccgcagccgctcaccagccgcgtcgtcacgctctggtaccggccgccggagctcctcctcggcgccaccgagtacggcgtcgccgtcgacctctggagcaccggctgcatcctcgccgagcttctcgccggcaagcccatcttgcccggccaaaccgaggtaaatatatatatcatctatctatggatggatgaaatgggatcgggcatctgattcggcgccattgctgatcatcgacgcagatcgagcagctgcacaagatcttcaagctgtgcgggtcgccgtcggaggagtactgggcgaaggcgaagctgccggacgtgacgctgttcaagccgcagcggccgtaccggcggaagatcgccgagacgttcagggacttctcgccgccggcgctcgaccttctcgacacgctgctcgccatcgagccgtccgaccggggcaccgccgccgccgccctcgacagcgacgtaagcatgcacccccttctcctcccctccctctcctctcctcgctcgcatggatctctgacacgtactcgtgtcctctgctgctgctcagttcttcaggagcaagccgctggcgtgcgacccggcgagcttgcccaagctgccgccgagcaaggagtacgacgccaagctccgcggcaaggaggccgccatgaggcaaaacgcgacggcggccatcggaggcaagggctccatgtccgtcaagccggggaggaacgagcagtccaaggcggcggcgccggcgcaggacgccgttggaggagatcaccaggtacgtagctctttcattccgaattcatcgtcttcttcccctccgccggcgtcgtcgtcgtcgtcgtcaaatttctttgtgggtgcgtacgtgtgcagaggaggcaggcggcggcggcggcgcgcgtggtgaacccgaggagcgcgagccaccactacagctcgctggaggacagcgtgccggggttccgcatggagccgccggcggccgcggggccgccggcggcgatgcagagcggcgggttcgggtcgacgtggtacaggaaggaccacgccgccaccggcgacccgcgcgccaccacgtcacgcgcggccagcgcctccgtcagggtgtccaactccgtcgccggcggcgcgcagctcacgtcgcagcggtcgtacgcacattcccgcggcaccgacctccacccgagctcgtcggcggcgaggcacgccaactcccgctacaaccgcctcgacgtcgccgagcccgccaacgcgctcgaccggccgggctccagctccacccaccaaaaggacctctccgccgccgctccggccaccgtgagtaccgtaccgtaccatccacaccaccaccattcttacattcttgcctgttgctgtcgctgttgcaccagagtagttttcaaggggatgcttacttttttttttcatgtcgcttaaaaagttatcaaaaattttgaaaaaaaagagtaagatatatcaatatgtgatatatcactttataaacatgcatgtttaaatttgactcatacaaatagaaaagaaaaacaaatttttgttttgaattgtataagtcaaaattcaacttgcatgtttgtagaaagatatatcaaatattgatttatcttgataatttttttttaattttttatgacttttgaaacatcatgcacaaatcgagagatatctcctcgagcgacaaaaatccacttactaatcaaattcttgctaacatggtgatgaactctaacgccattaggggttcggagggaggaacaagaggatccactactccggcccgctggtgccgccgggcggcaacatggaggacatgctccgggagcacgagcggcagatccagcaggcggtgcgcaaggcgcgggtcgacaaggagaggacgaatcaccacggcaacagcagcagcagtaacaacaacaggcaatactactgagctacttgctgactactttggctggctcacacaaagctaaaggaagaagacgatcgatcgagctggtgcccatggccatggaaggtgcagatcatcttccatggccatctcagaccacgggcctgactgtctgatgagaagattgcaatgcaatgcagggagatgatcttcatggatggaggagagtagaaagaagacctgatgaggtgaagatctctgatggagggtgcaggcaggcagacggcgacagcgacggcggcgcggaactcggggtatagatatctgcaattgaagagctggggggcttttcttgatccatgtgtataaatagcacactgttagagagggttttgggaagtctgatgaggaggaacaagccctgtaaaaacacggattgtaaaaggccaaatggaaaactgtgtatatcttgctgatcgaagtgatgcaacagacttcaatgacctagtttg
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| CDS seq | atgggcagcctttgctccaaggacagcgtcgccgaggagctcacgccgcagccgccgccggctgcggcagcggcggcggcgcccgtggggaggctgcagaagacggagagccagtcgttgaagcagctcatcacgctcaccgccaaggaggacgccgcggtggtcgcccccgtcgtgcacgccgtcatcacccgggcggagtccaacgccaaggccaagtccaacgccaaggccaagtccgccgccgccgtgccgccggtcgtcgtgatcacgtcgctcaacaagtcgtacagcaccgcgggtgcgcccgcacaccaccaccggctgtcgaccgtcgacgtcccgcaggtggtccccggcggcgtgccgcaggggttctccggcgagcacgtgatcgccgggtggccgtcgtggctgacctccgtcgccggcgaggtggtgcaggggtggctgccgcggcgcgccgacacgttcgagcggctggacaagatcgggcagggcacgtacagcaacgtgtacaaggcccgggacctggagaccggcaaggtcgtggcgctcaagcgcgtccgcttcgtcaacatggacccggagagcgtgcggttcatggcgcgggagatccacgtcctccgccgcctcgacggccaccccaacgtcgtccgcctcgagggcatcgtcacgtcgcgcctctcccacagcctctacctcgtcttcgagtacatggaccacgacctcgccggcctcgccgccacgccggggctgcgcttcacggagccgcaggtgaagtgcctcatggcgcagatcctcgccgggctgcgccactgccacgaccggggcgtgctccaccgcgacatcaagggcgccaacctgctgatcggcggcgacggcgcgctcaagatcgccgactttggcctcgccaccttcttcgacgccgccaggccgcagccgctcaccagccgcgtcgtcacgctctggtaccggccgccggagctcctcctcggcgccaccgagtacggcgtcgccgtcgacctctggagcaccggctgcatcctcgccgagcttctcgccggcaagcccatcttgcccggccaaaccgagatcgagcagctgcacaagatcttcaagctgtgcgggtcgccgtcggaggagtactgggcgaaggcgaagctgccggacgtgacgctgttcaagccgcagcggccgtaccggcggaagatcgccgagacgttcagggacttctcgccgccggcgctcgaccttctcgacacgctgctcgccatcgagccgtccgaccggggcaccgccgccgccgccctcgacagcgacttcttcaggagcaagccgctggcgtgcgacccggcgagcttgcccaagctgccgccgagcaaggagtacgacgccaagctccgcggcaaggaggccgccatgaggcaaaacgcgacggcggccatcggaggcaagggctccatgtccgtcaagccggggaggaacgagcagtccaaggcggcggcgccggcgcaggacgccgttggaggagatcaccagaggaggcaggcggcggcggcggcgcgcgtggtgaacccgaggagcgcgagccaccactacagctcgctggaggacagcgtgccggggttccgcatggagccgccggcggccgcggggccgccggcggcgatgcagagcggcgggttcgggtcgacgtggtacaggaaggaccacgccgccaccggcgacccgcgcgccaccacgtcacgcgcggccagcgcctccgtcagggtgtccaactccgtcgccggcggcgcgcagctcacgtcgcagcggtcgtacgcacattcccgcggcaccgacctccacccgagctcgtcggcggcgaggcacgccaactcccgctacaaccgcctcgacgtcgccgagcccgccaacgcgctcgaccggccgggctccagctccacccaccaaaaggacctctccgccgccgctccggccaccgtgagtaccgtaccgaacaagaggatccactactccggcccgctggtgccgccgggcggcaacatggaggacatgctccgggagcacgagcggcagatccagcaggcggtgcgcaaggcgcgggtcgacaaggagaggacgaatcaccacggcaacagcagcagcagtaacaacaacagattgcaatgcaatgcagggagatga
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| Protein seq | MGSLCSKDSVAEELTPQPPPAAAAAAAPVGRLQKTESQSLKQLITLTAKEDAAVVAPVVHAVITRAESNAKAKSNAKAKSAAAVPPVVVITSLNKSYSTAGAPAHHHRLSTVDVPQVVPGGVPQGFSGEHVIAGWPSWLTSVAGEVVQGWLPRRADTFERLDKIGQGTYSNVYKARDLETGKVVALKRVRFVNMDPESVRFMAREIHVLRRLDGHPNVVRLEGIVTSRLSHSLYLVFEYMDHDLAGLAATPGLRFTEPQVKCLMAQILAGLRHCHDRGVLHRDIKGANLLIGGDGALKIADFGLATFFDAARPQPLTSRVVTLWYRPPELLLGATEYGVAVDLWSTGCILAELLAGKPILPGQTEIEQLHKIFKLCGSPSEEYWAKAKLPDVTLFKPQRPYRRKIAETFRDFSPPALDLLDTLLAIEPSDRGTAAAALDSDFFRSKPLACDPASLPKLPPSKEYDAKLRGKEAAMRQNATAAIGGKGSMSVKPGRNEQSKAAAPAQDAVGGDHQRRQAAAAARVVNPRSASHHYSSLEDSVPGFRMEPPAAAGPPAAMQSGGFGSTWYRKDHAATGDPRATTSRAASASVRVSNSVAGGAQLTSQRSYAHSRGTDLHPSSSAARHANSRYNRLDVAEPANALDRPGSSSTHQKDLSAAAPATVSTVPNKRIHYSGPLVPPGGNMEDMLREHERQIQQAVRKARVDKERTNHHGNSSSSNNNRLQCNAGR |
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| Function | Probable serine/threonine-protein kinase At1g09600 [UniProtKB/Swiss-Prot:F4I114] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0021440 | OsCMeo_02g0021440.01 | Chr02 | 21479315 | 21482672 | + | NAM | ||
| CDS seq | atgggcagcctttgctccaaggacagcgtcgccgaggagctcacgccgcagccgccgccggctgcggcagcggcggcggcgcccgtggggaggctgcagaagacggagagccagtcgttgaagcagctcatcacgctcaccgccaaggaggacgccgcggtggtcgcccccgtcgtgcacgccgtcatcacccgggcggagtccaacgccaaggccaagtccaacgccaaggccaagtccgccgccgccgtgccgccggtcgtcgtgatcacgtcgctcaacaagtcgtacagcaccgcgggtgcgcccgcacaccaccaccggctgtcgaccgtcgacgtcccgcaggtggtccccggcggcgtgccgcaggggttctccggcgagcacgtgatcgccgggtggccgtcgtggctgacctccgtcgccggcgaggtggtgcaggggtggctgccgcggcgcgccgacacgttcgagcggctggacaagatcgggcagggcacgtacagcaacgtgtacaaggcccgggacctggagaccggcaaggtcgtggcgctcaagcgcgtccgcttcgtcaacatggacccggagagcgtgcggttcatggcgcgggagatccacgtcctccgccgcctcgacggccaccccaacgtcgtccgcctcgagggcatcgtcacgtcgcgcctctcccacagcctctacctcgtcttcgagtacatggaccacgacctcgccggcctcgccgccacgccggggctgcgcttcacggagccgcaggtgaagtgcctcatggcgcagatcctcgccgggctgcgccactgccacgaccggggcgtgctccaccgcgacatcaagggcgccaacctgctgatcggcggcgacggcgcgctcaagatcgccgactttggcctcgccaccttcttcgacgccgccaggccgcagccgctcaccagccgcgtcgtcacgctctggtaccggccgccggagctcctcctcggcgccaccgagtacggcgtcgccgtcgacctctggagcaccggctgcatcctcgccgagcttctcgccggcaagcccatcttgcccggccaaaccgagatcgagcagctgcacaagatcttcaagctgtgcgggtcgccgtcggaggagtactgggcgaaggcgaagctgccggacgtgacgctgttcaagccgcagcggccgtaccggcggaagatcgccgagacgttcagggacttctcgccgccggcgctcgaccttctcgacacgctgctcgccatcgagccgtccgaccggggcaccgccgccgccgccctcgacagcgacttcttcaggagcaagccgctggcgtgcgacccggcgagcttgcccaagctgccgccgagcaaggagtacgacgccaagctccgcggcaaggaggccgccatgaggcaaaacgcgacggcggccatcggaggcaagggctccatgtccgtcaagccggggaggaacgagcagtccaaggcggcggcgccggcgcaggacgccgttggaggagatcaccagaggaggcaggcggcggcggcggcgcgcgtggtgaacccgaggagcgcgagccaccactacagctcgctggaggacagcgtgccggggttccgcatggagccgccggcggccgcggggccgccggcggcgatgcagagcggcgggttcgggtcgacgtggtacaggaaggaccacgccgccaccggcgacccgcgcgccaccacgtcacgcgcggccagcgcctccgtcagggtgtccaactccgtcgccggcggcgcgcagctcacgtcgcagcggtcgtacgcacattcccgcggcaccgacctccacccgagctcgtcggcggcgaggcacgccaactcccgctacaaccgcctcgacgtcgccgagcccgccaacgcgctcgaccggccgggctccagctccacccaccaaaaggacctctccgccgccgctccggccaccgtgagtaccgtaccgaacaagaggatccactactccggcccgctggtgccgccgggcggcaacatggaggacatgctccgggagcacgagcggcagatccagcaggcggtgcgcaaggcgcgggtcgacaaggagaggacgaatcaccacggcaacagcagcagcagtaacaacaacagattgcaatgcaatgcagggagatga
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| Protein seq | MGSLCSKDSVAEELTPQPPPAAAAAAAPVGRLQKTESQSLKQLITLTAKEDAAVVAPVVHAVITRAESNAKAKSNAKAKSAAAVPPVVVITSLNKSYSTAGAPAHHHRLSTVDVPQVVPGGVPQGFSGEHVIAGWPSWLTSVAGEVVQGWLPRRADTFERLDKIGQGTYSNVYKARDLETGKVVALKRVRFVNMDPESVRFMAREIHVLRRLDGHPNVVRLEGIVTSRLSHSLYLVFEYMDHDLAGLAATPGLRFTEPQVKCLMAQILAGLRHCHDRGVLHRDIKGANLLIGGDGALKIADFGLATFFDAARPQPLTSRVVTLWYRPPELLLGATEYGVAVDLWSTGCILAELLAGKPILPGQTEIEQLHKIFKLCGSPSEEYWAKAKLPDVTLFKPQRPYRRKIAETFRDFSPPALDLLDTLLAIEPSDRGTAAAALDSDFFRSKPLACDPASLPKLPPSKEYDAKLRGKEAAMRQNATAAIGGKGSMSVKPGRNEQSKAAAPAQDAVGGDHQRRQAAAAARVVNPRSASHHYSSLEDSVPGFRMEPPAAAGPPAAMQSGGFGSTWYRKDHAATGDPRATTSRAASASVRVSNSVAGGAQLTSQRSYAHSRGTDLHPSSSAARHANSRYNRLDVAEPANALDRPGSSSTHQKDLSAAAPATVSTVPNKRIHYSGPLVPPGGNMEDMLREHERQIQQAVRKARVDKERTNHHGNSSSSNNNRLQCNAGR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0021440 | OsCMeo_02g0021440.02 | Chr02 | 21478955 | 21482673 | + | IsoSeq | ||
| CDS seq | gcgccaaaaccaaaagagagactcctcgcctcgcctcgcctcgcgtcgcgcatggcgagccgagaccccgccgccgccttcgtctcttctcctcccgtttgctcccccgccaccaacggccga |
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| Protein seq | APKPKERLLASPRLASRMASRDPAAAFVSSPPVCSPATNGR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.103214 | 0.731359 | 5.803705 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0559300 | RBH | 0.000000 | 0.054626 | 3.411256 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g35300 | RBH | 0.000000 | 0.039818 | 0.866286 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0559300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0021350 | RBH | 0.0 | 1.429736 | 0.235163 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0021440 | RBH | 0.000000 | 0.0 | 3.863703 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0012940 | SBH | 0.104711 | 2.215428 | 10.000900 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0021170 | RBH | 0.0 | 0.013073 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0021090 | RBH | 0.000000 | 1.215879 | 1.453502 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0348600 | RBH | 0.3542525 | 0.5241305 | 0.5690335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0001740 | SBH | 0.0 | 1.758102 | 0.482506 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0375200 | RBH | 0.4103095 | 0.4851835 | 1.739097 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021290 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0021030 | RBH | 0.0 | 2.503500 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021490 | RBH | 0.569705 | 1.786200 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0021180 | RBH | 0.0 | 0.080042 | 0.642490 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0021020 | RBH | 0.0 | 1.117829 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G021450 | RBH | 0.0 | 0.313576 | 0.501661 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0021220 | RBH | 0.0 | 0.0 | 5.309610 |
