Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0018090 | OGI:02051080 | 4/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:17798506-17799614 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttatgtcgtggttggtagtagtggacgatctttaatcttgctcagttcggagttgatcaaaattccggctaagtcctgtcgaaatgttttcacatccttctgcataatgtaaagggagtgcattttaaatcgtttttcgaaatgggaagcactggtgcaaaatatgaatagaggtcgttgtagttgcctgtatttgaattcctgggagataagattcgctccaatgctccatgaacttaagggtgtacaggccacacgagacgctacaagaatttagtcgttaggctaacacgtttccgtaattgaataatgtgaatatcatgtggaagagtttgagtcacccacccatctccttgctttggcaatttttggactttgttgtattcccattcggtaatattgaaaccaggccaatcatgttttaactgtgggtgttgattctctgtcccgtgtaatcccctctcgatagctagcagctgggaagttttgtgcaacgttggtacggtaaaaacatagcaaaaccgatttgaattatacaagtggaagtgtatcgcttaccacacgccttagatcgggtcgatctttactgattggctttgcgagcgaatatagtatttgcacctcacgtcgcttggcgttaagaacggctaggtaccagtgtgtatctttaatattaattaggaggaaaatctgcagatgttcaacagtaagatagagtcataaattgaattagccattacatagatagcttaaataagtattaccatgtcaaatgctagatagtcgcgtgccatatctctaatccatcgtttatctcgaggtttgcttgcttcgacatgcgctccctctacatttagtagacctgttttaatggccatctctaggaaggccttgccatctcccctgattcctttctcattatagcggaggcattggatgtatgcatccatgacctgaatttgaggttagttgagttacataacaaatataattataaaagaatagtaggcttgttaaataggcgaacttacatcatcatttaagaattctggttgtgttagtacattcattcttatccgtttaacctccacttcttcaatatgcaccat
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| CDS seq | atggtgcatattgaagaagtggaggttaaacggataagaatgaatgtactaacacaaccagaattcttaaatgatgatgtcatggatgcatacatccaatgcctccgctataatgagaaaggaatcaggggagatggcaaggccttcctagagatggccattaaaacaggtctactaaatgtagagggagcgcatgtcgaagcaagcaaacctcgagataaacgatggattagagatatggcacgcgactatctagcatttgacatgaaggatgtgaaaacatttcgacaggacttagccggaattttgatcaactccgaactgagcaagattaaagatcgtccactactaccaaccacgacataa |
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| Protein seq | MVHIEEVEVKRIRMNVLTQPEFLNDDVMDAYIQCLRYNEKGIRGDGKAFLEMAIKTGLLNVEGAHVEASKPRDKRWIRDMARDYLAFDMKDVKTFRQDLAGILINSELSKIKDRPLLPTTT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0018090 | OsCMeo_02g0018090.01 | Chr02 | 17798506 | 17799614 | - | NAM | ||
| CDS seq | atggtgcatattgaagaagtggaggttaaacggataagaatgaatgtactaacacaaccagaattcttaaatgatgatgtcatggatgcatacatccaatgcctccgctataatgagaaaggaatcaggggagatggcaaggccttcctagagatggccattaaaacaggtctactaaatgtagagggagcgcatgtcgaagcaagcaaacctcgagataaacgatggattagagatatggcacgcgactatctagcatttgacatgaaggatgtgaaaacatttcgacaggacttagccggaattttgatcaactccgaactgagcaagattaaagatcgtccactactaccaaccacgacataa
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| Protein seq | MVHIEEVEVKRIRMNVLTQPEFLNDDVMDAYIQCLRYNEKGIRGDGKAFLEMAIKTGLLNVEGAHVEASKPRDKRWIRDMARDYLAFDMKDVKTFRQDLAGILINSELSKIKDRPLLPTTT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.145712 | 1.056876 | 10.702828 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g29610 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0018040 | RBH | 1.587179 | 0.0 | 10.202814 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0018190 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0021050 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0012870 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0012190 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0213800 | SBH | 0 | 0.002271 | 0.1468895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0012560 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0250500 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0013120 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0012670 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0011830 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0012990 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G013140 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0012910 | SBH | 0.0 | 0.0 | 0.0 |
