Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g29610 | OGI:02051080 | 4/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:17615194-17616302 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATGTCGTGGTTGGTAGTAGTGGACGATCTTTAATCTTGCTCAGTTCGGAGTTGATCAAAATTCCGGCTAAGTCCTGTCGAAATGTTTTCACATCCTTCTGCATAATGTAAAGGGAGTGCATTTTAAATCGTTTTTCGAAATGGGAAGCACTGGTGCAAAATATGAATAGAGGTCGTTGTAGTTGCCTGTATTTGAATTCCTGGGAGATAAGATTCGCTCCAATGCTCCATGAACTTAAGGGTGTACAGGCCACACGAGACGCTACAAGAATTTAGTCGTTAGGCTAACACGTTTCCGTAATTGAATAATGTGAATATCATGTGGAAGAGTTTGAGTCACCCACCCATCTCCTTGCTTTGGCAATTTTTGGACTTTGTTGTATTCCCATTCGGTAATATTGAAACCAGGCCAATCATGTTTTAACTGTGGGTGTTGATTCTCTGTCCCGTGTAATCCCCTCTCGATAGCTAGCAGCTGGGAAGTTTTGTGCAACGTTGGTACGGTAAAAACATAGCAAAACCGATTTGAATTATACAAGTGGAAGTGTATCGCTTACCACACGCCTTAGATCGGGTCGATCTTTACTGATTGGCTTTGCGAGCGAATATAGTATTTGCACCTCACGTCGCTTGGCGTTAAGAACGGCTAGGTACCAGTGTGTATCTTTAATATTAATTAGGAGGAAAATCTGCAGATGTTCAACAGTAAGATAGAGTCATAAATTGAATTAGCCATTACATAGATAGCTTAAATAAGTATTACCATGTCAAATGCTAGATAGTCGCGTGCCATATCTCTAATCCATCGTTTATCTCGAGGTTTGCTTGCTTCGACATGCGCTCCCTCTACATTTAGTAGACCTGTTTTAATGGCCATCTCTAGGAAGGCCTTGCCATCTCCCCTGATTCCTTTCTCATTATAGCGGAGGCATTGGATGTATGCATTCATGACCTGAATTTGAGGTTAGTTGAGTTACATAACAAATATAATTATAAAAGAATAGTAGGCTTGTTAAATAGGCGAACTTACATCATCATTTAAGAATTCTGGTTGTGTTAGTACATTCATTCTTATCCGTTTAACCTCCACTTCTTCAATATGCACCAT
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| CDS seq | ATGGTGCATATTGAAGAAGTGGAGGTTAAACGGATAAGAATGAATGTACTAACACAACCAGAATTCTTAAATGATGATGTCATGAATGCATACATCCAATGCCTCCGCTATAATGAGAAAGGAATCAGGGGAGATGGCAAGGCCTTCCTAGAGATGGCCATTAAAACAGGTCTACTAAATGTAGAGGGAGCGCATGTCGAAGCAAGCAAACCTCGAGATAAACGATGGATTAGAGATATGGCACGCGACTATCTAGCATTTGACATGATTTTCCTCCTAATTAATATTAAAGATACACACTGGTACCTAGCCGTTCTTAACGCCAAGCGACGTGAGGTGCAAATACTATATTCGCTCGCAAAGCCAATCAGTAAAGATCGACCCGATCTAAGGCGTGTGAAGGATGTGAAAACATTTCGACAGGACTTAGCCGGAATTTTGATCAACTCCGAACTGAGCAAGATTAAAGATCGTCCACTACTACCAACCACGACATAA
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| Protein seq | MVHIEEVEVKRIRMNVLTQPEFLNDDVMNAYIQCLRYNEKGIRGDGKAFLEMAIKTGLLNVEGAHVEASKPRDKRWIRDMARDYLAFDMIFLLINIKDTHWYLAVLNAKRREVQILYSLAKPISKDRPDLRRVKDVKTFRQDLAGILINSELSKIKDRPLLPTTT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g29610 | LOC_Os02g29610.1 | Chr02 | 17615194 | 17616302 | - | MSU_osa1r7 | ||
| CDS seq | ATGGTGCATATTGAAGAAGTGGAGGTTAAACGGATAAGAATGAATGTACTAACACAACCAGAATTCTTAAATGATGATGTCATGAATGCATACATCCAATGCCTCCGCTATAATGAGAAAGGAATCAGGGGAGATGGCAAGGCCTTCCTAGAGATGGCCATTAAAACAGGTCTACTAAATGTAGAGGGAGCGCATGTCGAAGCAAGCAAACCTCGAGATAAACGATGGATTAGAGATATGGCACGCGACTATCTAGCATTTGACATGATTTTCCTCCTAATTAATATTAAAGATACACACTGGTACCTAGCCGTTCTTAACGCCAAGCGACGTGAGGTGCAAATACTATATTCGCTCGCAAAGCCAATCAGTAAAGATCGACCCGATCTAAGGCGTGTGAAGGATGTGAAAACATTTCGACAGGACTTAGCCGGAATTTTGATCAACTCCGAACTGAGCAAGATTAAAGATCGTCCACTACTACCAACCACGACATAA
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| Protein seq | MVHIEEVEVKRIRMNVLTQPEFLNDDVMNAYIQCLRYNEKGIRGDGKAFLEMAIKTGLLNVEGAHVEASKPRDKRWIRDMARDYLAFDMIFLLINIKDTHWYLAVLNAKRREVQILYSLAKPISKDRPDLRRVKDVKTFRQDLAGILINSELSKIKDRPLLPTTT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g25120 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0018040 | RBH | 1.587179 | 0.0 | 10.202814 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0018190 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0018090 | RBH | 4.145712 | 1.056876 | 10.702828 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0016410 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011250 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0264000 | SBH | 0.811624 | 1.223649 | 1.9255205 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011350 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0295100 | SBH | 0 | 0 | 0.0087925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011020 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0010880 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0011670 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011130 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
