Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0018070 | OGI:02051050 | 7/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:17794631-17797502 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttacatcaggaagctcaccgtcgcccttgcctcgccatcgccgatgtcgcccccatccattcctcggtgtccgcgctgccgccacataatccctttcgcgaccgacacctccagcgcttcccatcggatctggccgccacgacggtgacggcggcgaccagcagcaaccagcagcaacaaccatcgccaccatgacgacggtggcgagcagcagcagcaaccatcgccaccacgatgaccacagggagcggcgtgccggtgcggctagagagtggtggagcaagaggagtggcgagcggtgggagcgatggatgcggtgattacgatgacagcgaccagtcgggctcggcagagcaggctgccagcggcaagggccgtgctcggcggcgaggagtgagagggtcactcTtttttttttctaccgttctcattctctatgccgtaattagtcactaatataagatatactgtgtaatagtactacgaactccactacatgagctcaaataatgaattgttttacccagaaaaaaagatcctcatacatacggttcatacaaccaaccaaacaaactctcctctaaaccgtatctcttgtgcagacaaccaaacaacatctcatactagccaagctagactaatgcaaacaaccaaacgactgcatgtgtatcccattaattaggataagctcaacctggataagggagatgagccaggctagacagatacgagcaaccaaacacacccttaagtactgcaaatggttaatcaccttgacatttctcttgcataatgccatagcaacggctcgagccaccttgtcaagatttcctgcaagaataacttggtctgtccttgaggctacactattggaaaccaccgcagctgctaggctgctgccctgccatccacaattctagtcctcaaactttggctgctgctgatgaagataatgttctccgtttccattgagattacgtgcctgttttcattgatttataaactcatattcttgtcattttcgtggccttctcaggccaaatgtatatatgcatgattattcttttttctcacctggtttaggagtccaaggctgaaaactttagcacctcttctgtcagcttcatgtattgcctttccaatcaagtcgttgatagctttattctccctttttaagtggtactacacaaacaaattagatgcacgttcttaggatatactactctttgtccctgcattctaattagcataatcatcattattatgaatgatcagatattaattcttacatggaaactgtatcttggtatggcccatgtctgcatgttgaggtttttatctaggacacttctgtcgacagcaaatggagaagaactgaacgcccaggtacacatggcgatgagccatgataggggtgacaagatggttatcatggaccagttactttgattgtatcctctagcagcaaacatggagaatccgggcctcagatgataaatggattggaggtcggtgagatgcgtgaggtgaaccacatccagggatttctccttactgatcttgagcatgctctcgtatagggtgctagatgatttatccatggtattgtagatataatcgtagaatggcatgtaaagggagtaatttgtgcggaactgcgtgtggtgaagagaatgaaacctagcagcggaagaccaaagttcaaattaagtagaaacgattttgtaatgtgcatgtaatgtaagtataaacaacagtttggaatatcgatagagatcaagaaggaacatgaggtacttacgaaggggtgtacataaggtacttgaggggagggaaacatttgaagagataattgggaaccaactcaaaattgcagtggcccaagttgttcatgaagtctatgtagaatatgtaaattgcatatgcaaggatggagatggttccagtcaacaagcatgtgaccactgggattgcaaaagtacatcataggccactaactctgcaaatggatggacgacagctgaataggaataacggaatgatcatattagtcattgataagctcaggttgagtaaccaaaccccaaagaattaaattgaagtgataggctcgtgtctaagagagcatgagagtttttttttctcgaatacgtatgagagttgcatatcattgcattaaagaagaagaagagaggtgtccaagacgcaaatacaaagaaccaaaaagcaaaacacaaaaagagagcaaaagaagaacaaagcacctcaacaaggttgtcccaacaacctaatttaacaagtcttgttaactaggatcaataatcaacgaaaacccttggctcgtctatgttagagtgtgagttgtgaagtagtttgtgtttggtttgtgacatttgtcaacaaagcaattacatcagcaaaagtgcatgtcacctcgtggttgcagtgacctaagtagcatcccaagaacttgagttcaaatcttcatagaagcgaatttcggattgggttgtttgaggggctaagttcctaattttaaacagccccactccggtgctttctactcggagtagaaagaaatctgggccattgatcgtatttaattgtagggctgagatctagttctactcccaccagtattagtggaagtagaaatgtgaaagggtgtttttgttaagggaaaaaaatcgcgtaggggtattatcgtattttttcagtctcttactcaccctatccctatccgattcctctcgcatcatcaccatttcaccacttcccgtcgccattcccctccatccctgcctccgtcgccgtccatctccctcgccgcctccgtcgcctgtcctggtgtctgctccccctccagcgccat
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| CDS seq | atggcgctggagggggagcagacaccaggacaggcgacggaggcggcgagggagatggacggcgacggaggcagggatggaggggaatggcgacgggaactgtcgtccatccatttgcagatggtcacatgcttgttgactggaaccatctccatccttgcatatgcaatttacatattctacatagacttcatgaacaacttgggccactgcaattttgagttggttcccaattatctcttcaaatgtttccctcccctcaagtaccttatgtacaccccttcgtttcattctcttcaccacacgcagttccgcacaaattactccctttacatgccattctacgattatatctacaataccatggataaatcatctagcaccctatacgagagcatgctcaagatcagtaaggagaaatccctggatgtggttcacctcacgcatctcaccgacctccaatccatttatcatctgaggcccggattctccatgtttgctgctagaggatacaatcaaagtaactggtccatgataaccatcttgtcacccctatcatggctcatcgccatgtgtacctgggcgttcagttcttctccatttgctgtcgacagaagtgtcctagataaaaacctcaacatgcagacatgggccataccaagatacagtttccattaccacttaaaaagggagaataaagctatcaacgacttgattggaaaggcaatacatgaagctgacagaagaggtgctaaagttttcagccttggactcctaaaccagggcagcagcctagcagctgcggtggtttccaatagtgtagcctcaaggacagaccaagttattcttgcaggaaatcttgacaagatccgatgggaagcgctggaggtgtcggtcgcgaaagggattatgtggcggcagcgcggacaccgaggaatggatgggggcgacatcggcgatggcgaggcaagggcgacggtgagcttcctgatgtaa
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| Protein seq | MALEGEQTPGQATEAAREMDGDGGRDGGEWRRELSSIHLQMVTCLLTGTISILAYAIYIFYIDFMNNLGHCNFELVPNYLFKCFPPLKYLMYTPSFHSLHHTQFRTNYSLYMPFYDYIYNTMDKSSSTLYESMLKISKEKSLDVVHLTHLTDLQSIYHLRPGFSMFAARGYNQSNWSMITILSPLSWLIAMCTWAFSSSPFAVDRSVLDKNLNMQTWAIPRYSFHYHLKRENKAINDLIGKAIHEADRRGAKVFSLGLLNQGSSLAAAVVSNSVASRTDQVILAGNLDKIRWEALEVSVAKGIMWRQRGHRGMDGGDIGDGEARATVSFLM |
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| Function | Very-long-chain aldehyde decarbonylase GL1-5 [UniProtKB/Swiss-Prot:Q7XDI3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0018070 | OsCMeo_02g0018070.01 | Chr02 | 17794631 | 17797502 | - | NAM | ||
| CDS seq | atggcgctggagggggagcagacaccaggacaggcgacggaggcggcgagggagatggacggcgacggaggcagggatggaggggaatggcgacgggaactgtcgtccatccatttgcagatggtcacatgcttgttgactggaaccatctccatccttgcatatgcaatttacatattctacatagacttcatgaacaacttgggccactgcaattttgagttggttcccaattatctcttcaaatgtttccctcccctcaagtaccttatgtacaccccttcgtttcattctcttcaccacacgcagttccgcacaaattactccctttacatgccattctacgattatatctacaataccatggataaatcatctagcaccctatacgagagcatgctcaagatcagtaaggagaaatccctggatgtggttcacctcacgcatctcaccgacctccaatccatttatcatctgaggcccggattctccatgtttgctgctagaggatacaatcaaagtaactggtccatgataaccatcttgtcacccctatcatggctcatcgccatgtgtacctgggcgttcagttcttctccatttgctgtcgacagaagtgtcctagataaaaacctcaacatgcagacatgggccataccaagatacagtttccattaccacttaaaaagggagaataaagctatcaacgacttgattggaaaggcaatacatgaagctgacagaagaggtgctaaagttttcagccttggactcctaaaccagggcagcagcctagcagctgcggtggtttccaatagtgtagcctcaaggacagaccaagttattcttgcaggaaatcttgacaagatccgatgggaagcgctggaggtgtcggtcgcgaaagggattatgtggcggcagcgcggacaccgaggaatggatgggggcgacatcggcgatggcgaggcaagggcgacggtgagcttcctgatgtaa
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| Protein seq | MALEGEQTPGQATEAAREMDGDGGRDGGEWRRELSSIHLQMVTCLLTGTISILAYAIYIFYIDFMNNLGHCNFELVPNYLFKCFPPLKYLMYTPSFHSLHHTQFRTNYSLYMPFYDYIYNTMDKSSSTLYESMLKISKEKSLDVVHLTHLTDLQSIYHLRPGFSMFAARGYNQSNWSMITILSPLSWLIAMCTWAFSSSPFAVDRSVLDKNLNMQTWAIPRYSFHYHLKRENKAINDLIGKAIHEADRRGAKVFSLGLLNQGSSLAAAVVSNSVASRTDQVILAGNLDKIRWEALEVSVAKGIMWRQRGHRGMDGGDIGDGEARATVSFLM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0621300 | SBH | 0.730189 | 0.607753 | 3.944597 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g29600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0621300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0018020 | RBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0018160 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0025050 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0017840 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0291700 | RBH | 0.04411 | 0.2574475 | 0.160526 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025020 | SBH | 0.0 | 0.0 | 4.565034 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0025240 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017700 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025370 | SBH | 0.974251 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025270 | SBH | 0.380678 | 0.688278 | 4.121141 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0024790 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G006110 | SBH | 0.0 | 0.0 | 0.579438 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025280 | SBH | 0.0 | 0.0 | 31.704910 |
