Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_02g0025370 | OGI:02070260 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr02:25895659-25901691 | ||||||||
| Gene Symbol | CER1, OsCER1, OsGL1-4, GL1-4, Os CER1 | ||||||||||
| DNA seq | tttcaaagattttgtgcagagcgtcatgggcgaattttacagtgtcgaatcaaactttaagggaaggctaaaacgatagtagcagcgagccagcgagtaagcttagctttacctggtcttgtttgtctcgtctcaagagcactgaccgtgcgatcagtcaggttttactttgcgaagtctaaacaagaaaacattgcctattattttaattattcccccacaagattcaaataagagataaacgtaatgttacagaactgacatagactatagattataaaatactgagctattggaattaagttcgttcgcactgtgcctcctcatgacttatcagtacccaagctcagtattacaaacatagtaagataataagtgaataatccatctggttcccaagctagataatgaatggattatgccgttgctggaaatcatagcatcatctactagcatggaatacgccatccatgcttccagaggtgtcaagctttagtgagaggaaggaatccatgccgaatggcagctgaccatgatttctcaatatccatcatctcatccccacactcgtgcatgttccatccttccagagcatgaagtattccagcaatgtgccaagcactcatcacccttcttggaagccaattctgaccacaaaggtagtagcactattaagaagaggttctttgatgtcgcatattttcagattaacaaagcagataacatatctgtattacctcgcaggagtggatgttcttcatttcctccgggatcctcattgctggggtgctcatgtaagtgcagtccttgcgaagtttcttaagggggaactgtgatatgggaataaaaattgttccttttggcgccatcttttgctcgttgtcgtcaatattgtgtactatccaaagctgcaataacatgaagtattagcatgaatataagctgcattttaacattacttgtagaatagtctataagctacattttaacattactagtagaagagtctacaggtgcatcatgttgcttgagagtttgtcaccatttcttgcaacaatttttttacctgaggtacgttgtcgctcgagagtttcaaatagcttgccctgttctctggtatttgtgacttgagcatgtggtatacctccttttcattcatgatcacctgatccagattaatgtaatgcaatttaaggcaaaaattatgagaaaaattaaccaaactatattcaagacaacgatgatttgcaaattgatatatagattatacctggacacctctgtcacatagtgcaatggcaatggcacgagctatcttagaagtgcctgtacgaagaaaaactttctttgcatctgaagggatactttttagcaccactgcagtagctaagccacttccgtcgacaattcgaactcctaattttggatacttctgtctaaatagttcaccgtttccattgagctgttttgcctgaagaggaaacaggggaaaaaatgctcagttctcatgatgattcaggattatacacactctaaaatgcaatttgagaattcctaaaaatagcacaaacttaaatttttgcactcctgctgtcctttttcaactaatcacatttttaacatgaaacagaggacatgtccatgagattttcttgttattgtttatttttggcacgttttatcatgctactttcaacctttaccatgccattaaactattaatttgattctcattacacgagctttaaaggtaagaactccacacctgattcagtagtcctagactaatcactttaacccctttcatatcagcatccaatattgccttttcaattaagtcgttgattggttctctctcccacgtaaggccatactgcagagtgcaaaaccagaacagttagtatcttccataatccatacctttgaatttagaaatgcataagcgaggggaagtgattacttggaagttgtatcttggtattgcccatgtttgcatcttcatcttgtttagtttaattctctcaacgacaaatgctgaggacccataaatccatgcaagtaccattgacagccatgccaagggccataacgtccacatgtaccacgcagagtcactgtacggtttggaggctatggatgcaattcctatccttagatgataggctgattgcaagttggtcatatgcgtgagatgaacaaggtcaggtgtttcttccgttcctttcagtgagctttcatacagctcgtcagatgacttgtccatggtgttatatatgtagtcataaaatggcatgaatagcgagtagtttgtgcggaactgcgtatgatgaagagaatggaacctgcagaaggaaatagcatttgtttgttagcattgggtttatgaactcacgaggctgaacttcaagttatgtgaattcagtgatccaatctgtcatcacgttggtaatacatttctatgatagatacatgagagaagagtgttgcacttacgatggggtgtagatcagatacttaaggggtggaaagatttggaaaatccactctggcaccaactcaaaattgcagtgtcccatgttgttcatgaagtcaatgtaagcaatgtaccccacaatgcccatggccgaaacatttcccaaataaattgttgacagtatggggattgcaaacagtatgaaatagaccacatgttcagcaaaaggatgaataacagctgcaatgtataaaatcgttgtaagtgccaatagtaattgtgcattaacagggtaggtacatactcttatatatgtgctttataaaaaaacaacaggacctatgcatgaacatcacactgatgttttatagctaaaacacctcgttcaatttcaggtaatagcctcctcccagatatatgatcttttcttgtacttagaaagcaactataatagtcgatcaatccctttcgaattgttctacttgtaggacctgtatttgccaacgtttgataaaaactactccctttgtcctaaagggatttcatttctagtctttcaaccttgcccataaaagacttattttaactttcttacctaccctccgtccgtgaattaagattttgtatcccttcaatacccctaactatcactaacaatactactttcttattaatgaggagcacttcgatcttttacccttattactaatttgttaactttgtttaaaaaaaagtcattgaaggacggaagaagtattctacttaggttgtgtttagttcgtgtgacaaaatttttgaagtatacggacacacatttgaagtattaaacgtagactaataacaaaacaaattacagattccgccttaaactacgagacgaaactattaagcctaattaatccgtcattagcaaatgctgactgtagcaccacattgtcaaatcatggcgtaattaggctcaaaagattcgtctcgcgatttacatgtaaactgtgcaattggttttttttcgtccacaTttaatgttctatgtatatatacaaacatttgatgtgacgaaaaagttgcaagtttgaaaaaaaaaagtttgaatctaaacacggccttaggccgagtttagttccaaactttttcttcaaactttcaacttttacatcacatcaaaacttttctacacatataaacttccaaattttccgtcacatcgttccaatgtcaatcaaacttctaaTtttggcgtgaactaaacacacccttaacctatgtttgttttcagtttttcattcagtatcagtaatagcaacagctatatctagatcagaaggttgtggaggtggtccaaactgcattttctgcaagccgcaatatttatgtctcgttttattgggtactctctgtactgtaaactacaggctctgtgctgtaaactgtaggctgttcacccatcatcactgaagctctgcaaatgccatgtgaaatgtcaataggagtataccggccgttctttccagcatttatcggtcaaattggtaaggaaaggtaatactcctactattggcctgcaccgggagtggtcctaaactgaatcgaacacatcagcgctgcaattcagaaagtcacatgcatttctcatttcttgcaggctggacgggcctctctctctctctgcctagcaggtacagccaatttatgccgtttactctacgacagtgacacagtgtgaagctcagagcctcagactggacatatcacaatcccgtcccgtaggtgttctttttcttcttttgtcatgaaaaggtgcattgcaaaaaaaaaaaaagatactgtggtactgttcatggatcagagaacataaatgatgttggcagaacatttgtgattttttttttctggtagaagatgagctgttggtctgaaattaatactccgtacagtgtcttcaattcgattcctgcatcctgctggtcattctttactttcatgtgtgttgttcttagctacgacgaattctttaattatctaagaatgtgttattccgaggagtgcaactgctacttcatcatattttaactcgagaacatactaggaatgtagggcatggcatctccggcaagtgacaaaaagttttttcatgaaattaaacaaacgagaggagcccatatcggccactttgtgcttactatttatgatctgcgcacttcattaatctaagaacgcaatcaacTAtatataacaattattagactgaacagtgagacacggtacggtactaacaagttaattaaatgaacacccatgagatgataaggcatcaaacaaaaactaacgaagtgagatgagctgctatgagttgtgtgaactcatgactgatgcatgtaaaacaaagccacttattagcaaatgataaattaaggttaattattttttaaaaaacagattaatgtgaTtttttttaaaaaaaagcttttctatagaaaacttttcATataaaagtattttttaatagattgacaagcatgcgcgtagaaaagaaggaggatgaagttgagaatattgagtaaagaaacacagcctttaagtcgtgtggcttacaggtgatgggctcggtgacgatggaggcgtggtggtgggagtggtagcgggagtagaggaagtggtggtgcagcgcgcggtgAaaccagtagtagaggaactcgacggggcccgtgtgcaccagcgccgtcaccacggcgccgtccgtcctccacaccggcatccgcctcacgctcggcatcgccaggtaccccgcgtagaacaccaacccattgaacaggatctggtcatccctgcagcacgcaacgcaaatcagcacgaatatatacagtggtggtagctgcttgttgttgttgttgttgTtgtgcgtgtgcgtgttgaggtgactgaccagcctcgctcgcggtcgacctggtcgaactcgatgccgcggtcgacgatgcggtgcttgctgcgggcggtctggtagcgggagaggctgatccagatctggttgtggatcatccgcagcagcagcgacggcaggatgagggagaaggcgatgtcgaggtcgccccacccgttgcgcatcacccggcgcgcgccgtgcgccaccacgggggccatcaccacgtactgcgcatgccaccccatgccatgcatgtcAaacaaagctactagccgagaatataatcatcttttttaggaaactgcatgcatgtactgggatgtgcaattttaaggtttgtatttggctggccattttactgtatgcaaacaactgcatctgttgaagttcatcaagaggaacgaacgggggagcaaggaaaaaggatgaacatgttttcttcgctcagaaatcagaaggtgagaatttgggcgtgtaccttgaagttccccagcctatgccacggccattcggtcaaagggcccggcctggtcgccatggctacgctgccgtcgctgtggtcactctgcctcacctcacctcacgtcctcacctccccctctttcacgcaataataccgtggctagccaagcaccaaccc
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| CDS seq | atgggcattgtggggtacattgcttacattgacttcatgaacaacatgggacactgcaattttgagttggtgccagagtggattttccaaatctttccaccccttaagtatctgatctacaccccatcgttccattctcttcatcatacgcagttccgcacaaactactcgctattcatgccattttatgactacatatataacaccatggacaagtcatctgacgagctgtatgaaagctcactgaaaggaacggaagaaacacctgaccttgttcatctcacgcatatgaccaacttgcaatcagcctatcatctaaggataggaattgcatccatagcctccaaaccgtacagtgactctgcgtggtacatgtggacgttatggcccttggcatggctgtcaatggtacttgcatggatttatgggtcctcagcatttgtcgttgagagaattaaactaaacaagatgaagatgcaaacatgggcaataccaagatacaacttccaatatggccttacgtgggagagagaaccaatcaacgacttaattgaaaaggcaatattggatgctgatatgaaaggggttaaagtgattagtctaggactactgaatcaggcaaaacagctcaatggaaacggtgaactatttagacagaagtatccaaaattaggagttcgaattgtcgacggaagtggcttagctactgcagtggtgctaaaaagtatcccttcagatgcaaagaaagtttttcttcgtacaggcacttctaagatagctcgtgccattgccattgcactatgtgacagaggtgtccaggtgatcatgaatgaaaaggaggtataccacatgctcaagtcacaaataccagagaacagggcaagctatttgaaactctcgagcgacaacgtacctcagctttggatagtacacaatattgacgacaacgagcaaaagatggcgccaaaaggaacaatttttattcccatatcacagttcccccttaagaaacttcgcaaggactgcacttacatgagcaccccagcaatgaggatcccggaggaaatgaagaacatccactcctgcgagaattggcttccaagaagggtgatgagtgcttggcacattgctggaatacttcatgctctggaaggatggaacatgcacgagtgtggggatgagatgatggatattgagaaatcatggtcagctgccattcggcatggattccttcctctcactaaagcttga
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| Protein seq | MGIVGYIAYIDFMNNMGHCNFELVPEWIFQIFPPLKYLIYTPSFHSLHHTQFRTNYSLFMPFYDYIYNTMDKSSDELYESSLKGTEETPDLVHLTHMTNLQSAYHLRIGIASIASKPYSDSAWYMWTLWPLAWLSMVLAWIYGSSAFVVERIKLNKMKMQTWAIPRYNFQYGLTWEREPINDLIEKAILDADMKGVKVISLGLLNQAKQLNGNGELFRQKYPKLGVRIVDGSGLATAVVLKSIPSDAKKVFLRTGTSKIARAIAIALCDRGVQVIMNEKEVYHMLKSQIPENRASYLKLSSDNVPQLWIVHNIDDNEQKMAPKGTIFIPISQFPLKKLRKDCTYMSTPAMRIPEEMKNIHSCENWLPRRVMSAWHIAGILHALEGWNMHECGDEMMDIEKSWSAAIRHGFLPLTKA |
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| Function | Very-long-chain aldehyde decarbonylase GL1-4 [UniProtKB/Swiss-Prot:B8AFI3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0025370 | OsGoSa_02g0025370.02 | Chr02 | 25895659 | 25901691 | - | NAM | ||
| CDS seq | atgggcattgtggggtacattgcttacattgacttcatgaacaacatgggacactgcaattttgagttggtgccagagtggattttccaaatctttccaccccttaagtatctgatctacaccccatcgttccattctcttcatcatacgcagttccgcacaaactactcgctattcatgccattttatgactacatatataacaccatggacaagtcatctgacgagctgtatgaaagctcactgaaaggaacggaagaaacacctgaccttgttcatctcacgcatatgaccaacttgcaatcagcctatcatctaaggataggaattgcatccatagcctccaaaccgtacagtgactctgcgtggtacatgtggacgttatggcccttggcatggctgtcaatggtacttgcatggatttatgggtcctcagcatttgtcgttgagagaattaaactaaacaagatgaagatgcaaacatgggcaataccaagatacaacttccaatatggccttacgtgggagagagaaccaatcaacgacttaattgaaaaggcaatattggatgctgatatgaaaggggttaaagtgattagtctaggactactgaatcaggcaaaacagctcaatggaaacggtgaactatttagacagaagtatccaaaattaggagttcgaattgtcgacggaagtggcttagctactgcagtggtgctaaaaagtatcccttcagatgcaaagaaagtttttcttcgtacaggcacttctaagatagctcgtgccattgccattgcactatgtgacagaggtgtccaggtgatcatgaatgaaaaggaggtataccacatgctcaagtcacaaataccagagaacagggcaagctatttgaaactctcgagcgacaacgtacctcagctttggatagtacacaatattgacgacaacgagcaaaagatggcgccaaaaggaacaatttttattcccatatcacagttcccccttaagaaacttcgcaaggactgcacttacatgagcaccccagcaatgaggatcccggaggaaatgaagaacatccactcctgcgagaattggcttccaagaagggtgatgagtgcttggcacattgctggaatacttcatgctctggaaggatggaacatgcacgagtgtggggatgagatgatggatattgagaaatcatggtcagctgccattcggcatggattccttcctctcactaaagcttga
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| Protein seq | MGIVGYIAYIDFMNNMGHCNFELVPEWIFQIFPPLKYLIYTPSFHSLHHTQFRTNYSLFMPFYDYIYNTMDKSSDELYESSLKGTEETPDLVHLTHMTNLQSAYHLRIGIASIASKPYSDSAWYMWTLWPLAWLSMVLAWIYGSSAFVVERIKLNKMKMQTWAIPRYNFQYGLTWEREPINDLIEKAILDADMKGVKVISLGLLNQAKQLNGNGELFRQKYPKLGVRIVDGSGLATAVVLKSIPSDAKKVFLRTGTSKIARAIAIALCDRGVQVIMNEKEVYHMLKSQIPENRASYLKLSSDNVPQLWIVHNIDDNEQKMAPKGTIFIPISQFPLKKLRKDCTYMSTPAMRIPEEMKNIHSCENWLPRRVMSAWHIAGILHALEGWNMHECGDEMMDIEKSWSAAIRHGFLPLTKA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0025370 | OsGoSa_02g0025370.01 | Chr02 | 25895659 | 25901691 | - | NAM | ||
| CDS seq | atggcgaccaggccgggccctttgaccgaatggccgtggcataggctggggaacttcaagtacgtggtgatggcccccgtggtggcgcacggcgcgcgccgggtgatgcgcaacgggtggggcgacctcgacatcgccttctccctcatcctgccgtcgctgctgctgcggatgatccacaaccagatctggatcagcctctcccgctaccagaccgcccgcagcaagcaccgcatcgtcgaccgcggcatcgagttcgaccaggtcgaccgcgagcgaggctgggatgaccagatcctgttcaatgggttggtgttctacgcggggtacctggcgatgccgagcgtgaggcggatgccggtgtggaggacggacggcgccgtggtgacggcgctggtgcacacgggccccgtcgagttcctctactactgctgttattcatccttttgctga
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| Protein seq | MATRPGPLTEWPWHRLGNFKYVVMAPVVAHGARRVMRNGWGDLDIAFSLILPSLLLRMIHNQIWISLSRYQTARSKHRIVDRGIEFDQVDRERGWDDQILFNGLVFYAGYLAMPSVRRMPVWRTDGAVVTALVHTGPVEFLYYCCYSSFC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr02 | 25898371 | 25900810 | - | OsGoSa_02g0025370.02 | OsGoSa_02g0025370.02,OsGoSa_02g0025370.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.974251 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0621300 | RBH | 0.730189 | 0.607753 | 3.944597 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g40784 | RBH | 0.492996 | 0.408106 | 1.013781 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0621300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025460 | RBH | 0.0 | 0.0 | 35.816257 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025610 | RBH | 0.0 | 0.0 | 3.897600 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025460 | RBH | 0.0 | 0.0 | 48.338547 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0025050 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025130 | RBH | 0.0 | 0.0 | 67.009834 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0402400 | RBH | 10.6441845 | 1.3844775 | 71.9904595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025020 | RBH | 0.0 | 0.0 | 4.565034 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0431300 | RBH | 21.2753155 | 0.138438 | 101.9741365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0025240 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0025060 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0019370 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025270 | RBH | 0.380678 | 0.688278 | 4.121141 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0024790 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025440 | RBH | 0.062414 | 0.0 | 10.758593 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025280 | RBH | 0.0 | 0.0 | 31.704910 |
