Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0017680 | OGI:02050130 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:17413122-17420172 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttacaaaatcttcaaaagatgatcagagcatttatgtcccaccttcagtaacattagagcagctccttgacggtagcaggcttctggccagtttggttgcatcatcctgcaagcttcagcatctatcaaagccttctccccctcacccaatttcagccaacaaaggctcctatttgagaacaaagatgcatctctagtattgagagcaatagcctacaaccagacaagcaattagcacaaacagttaaggttgcatgccctaccacagttgaccagtgacatctcaatacattatttatacccggttgaagattcaatttcacattcaatctactgtctgtatttttagtttaaagatataaaataatgtgtgatatttcaaatatcaaaggaaaaattatatcggaaatagatgcatcttaatatgaagctgtaataatgtaccttggtataaatgtgcatggcaccacgataatctttattcttgactgcttcacggccttgaaattttcccatatcaagcatagcttcgcaaaactcttcatcctgaaacattgagaaaaatcaaatgaaatataaggctcattaccacacattatagcccacatgctcagtactcagttgcatcaattattatatttttatctttgagccaatgaaagatgtaaatatatttttatatagtttcatgaagcagttgccaaatcaacgcagggaatcatgtgattgttacacctcactatttttaccgtcatactactgctaatttacagttctacagtactgatgttgccatatcatgttctctacagcatgccaagaagcacccactagtatatagtagcagtgagtcatgtagaccttggaactttcaagatatttcttatgaacgtatttagaaaaagcatactcaagcaaatttaagacaaaccagtgaactcctatattttttgctttttccattataaatgtgtgcaatattaattgtcataagaaattgcatttttactttcaacagttccaaatgtctgtaagacaacaagtgatccccctctaataattcttactagtggcacccactagcaatattttaagtcactaaagctttagaataatgtacctaaaagaccgaaaagcgagatgttttaagatcccatgtccaatggccaattggcatttgctagatcacaaaccacataggatgggaaattgaacatgaaatatgtagataatccccaagttcaatgaggatgggaaattgaacatgaaaaatgtagataccccccaagttcaatgagataaatgttagacatgtatgctctctagaacagtctcttatcgtaaattgctacatccatcaattcaaaacaacttgatgatgcaaggaggtcacaacatccaactaccatactgctaaatgcttgcatataatatgccatgaaaaattatgccgtatgcattactgacaactgagttgcaagttttatataaattgcgtagtgtacaataccatagacgaatgtcaagaactaccacagttctttttttgtttgttgttttgggcatctataatctaaaaaaagtcatttcctttcttttctttttcttcgaattcaagttctttctttgatctcatattaggatataagttgatttctagagtttaaaacttgtcccaaaataaattgatttctagcctcttgcctaccctcggttcacaaattgagaaattttataccttcaataccccttacttacccatccaccaatactaccttcctattaagctgggaaactttagtcttttcccctcaccactaaagttttctcaggacacgagggtttcatttattttgggagagggactatactagatatactcagatgtagaagttgatttaaaagttcgaaagtacagaatattgaaatcgatttgacaagttggtcagtgagcttgatccaagcaagaaagaacagcacacagagaacacaataaactggtttacagggagtttagcccttacagaaagatgactatcatgctaagtattcacctaataacaatcaaaataatttcttagccacttaagatgtttttcaggaagaaggtttgaatgcttaaaggtcaggggcgtgaatatagaaatcatagaagggaaaaatctatctccaagatagtactacaagtcaacatgcacgccagtaacacaatgaagttctcagatcaaaccttcacatcaggcagtgactttgcataattaatgattccatcaacagtccaatcgtgcacacacggaatacgagaagtgacaggaaatagggtctcaacatctttccgcgcaccacaaagtgcggcaacttctataggcaagtgtccatactgtcaacaacacaatgaaacaaaaaatcttatgccaagataaatacagctggaagaagttcctaagatattgtaaaggtgtctgaggaaatgctgcttgctatgatcggctcactagagataattatgcagatttatagagccaccaacagagcaattgatgtagagcaaggcctcatcccagtatacaaattgtattatttcaaaaagagcaatttaacatgaaataaacttcttgaagacgttacctaacaatgaagatgattgtgcatctctgtcacacccagaaattcacaaaccagaatttctaagctgaatgtgcattaaatccctgtccaggaccagccagggtacacaaacgacaattgttgacatacagatccacgtcttacaaaaatagaaaagattacaaatgcagcggaaaagataacagcgggctaaaccgggaagcttgacttcagcagcggggcgactccactctacaggcatcccttgacggcagcgacgaaaccaacttcgtcaggacagctcccactaggaagatcttcagctctggtgtggaggaaaagagagcaagactgagtactacccactgtactcagcaagtcataccggaagaacagatatgatgcaggatatatccaaaggaggctaagggttcatttgcataaagcaagcgtttaaaaacagtagttgaaaacagtaaaacaattgtagtaattaagtagtattaaccaatcactgtccaacgctacaccacgttgcaacaggcccaaccaaccacctgaactacaccagttcattaagctagactaggggtgagactaattacgatgaatctggttgatcgcccataaccgcgggcacggctatttgaatagttttactctggccagaggtgtacaactgtccccacaagacacgattccacacatgtcgccatgccctgaagtatcaccatgatactgcaaagggggaaatcgtgacaagaccctccgcataaccttcccctaaccatccacaccacgctaaggtttcaccccacccctcaaaaggcagtgggcggtcccctcttgcgctgcggtgaatccggcagctagacaaccggacaccccggccgacccaactccatcacgcccaccctcgccactggtgcctaggaaagggtcgagctatacttcagatcaagcagttacccactcccacttgtggtaagcacggtaagtctcccagggtttcccgtgaaccggtccttaattgctatgggtgcgaccagcaaaaccatacaccaacagcccaccattcaatgtattttaattaactaacaccattgcggtggcaccaatccaaaactatgctaatagccaaagtctatgtaataatgtgatccccatttgtgtactagttgaacaaagcatggctaagcatttcctaaaccaacatctaatcattatgatacccaagttatcaatggcatatggtaaacaatatatggctgagtaataggacccatcccacatgacattgaaaaagaatgcaacatttaatagaaatgcaggatatttgtaaatagggtacaatatgatcaaatgtaatacatgacttgccttgctctcgcactgataagaccacagcaacgtcttcgagataccgcggatcgacgaaacggccgaaaactacgcgacaaacaaagcacacaagcaaaacatgctataagactactaaaacagggaacaaaatcatttttaatggattctttgcatttttatgaatttactgatacttgaatggacttaaacggagctcggatgaattacttatgaattttagaagataaactgtgtttttactaataaagaaaaagtccttaattatttatttcgcaataaatccccagggctgacgtcaacaaggggaggggacgccgacatgtgggccctgcacgtcagcggctcaagagagagggagggggcgccggcatgcgagccccatgggtcagcggcacaaggcggcaggtccaccgtggaccgggaccacgcgggtggtctaccgccggtccacgggaccgacggtccagatcggccgggaggccgatcggacggcacggcggcggctaggcacggctcggcttcaaaaccggccggccgaccatggggagcggctgcggcgagcggtcgccggcgacggcaagcggcggcacgggaggcggcgcggacggcgcgaaaggtggcggcgctcatgggagggacgaaaggaagaaggagaggggatccctcaccgaggcgatgacggcgaccggcgcgggaagagacgagcggcaacggcggttcggtgaacggtggacggggtcgggcacaacctgggaaaggcgatgactgggttaggagaagggaaggatgaccacggcgactagaacggccggccagagttgggcggaaatggagagctcaccggcgtgcgagggaggcagcgctctggcgacgtttagcggcaagcgagtggcggccgaggtagctctcgcggcggcggagctaacggcggcggcggcttggcgcggcggaggccctagcggcgacagcgcgtggctggagatggcggcaacggcagaggagctcaggtgcacgcgcgagggcggtagaaggcgtgggagaggacggcgaaatgggggaaacgagagagggagctcgggtgacggtttttatgggcaagggaggggcggacgtggccggggaggtggccgaaaccgccggcgacgtggggtggagagagagagagagtggggtgggattcgatagcgcgcgcacgaggcgggagcgacggggcgtgggcggcgtcgtggggaggacgcgggaatggcgcggtgtgggcgcgggaggagcagaggaggtggagcggcaacggcggttgccggcgtgggcgcacagctggaggttggggacgacccgacaggtggggcccacctgtcggcgtcccgaagggaggaggagggggcgcgggccggcccaagaaggagatgggcgcgcgcaggcggtggggtggactgggccgacggcccaagaagaggaaaaaggaggaaaaagaaaaagaaaaggaagaaaggatttttcctgggatttaaaattgcactttggtgatttttaattggttaaaattatttccaaggctctgaaaattccactaaaaatcctgttaatatattgtgacacgtggaactcaagaaaaatcccacaatgccaattccaattattaattgcatttattaattaaggaattagctctaggttaaatcaaaccaatttcttcggacaatttatttaacaaatttttaaagcaaggaaaagagggaaacttccgggcgtgacaatctcacataacaacacaacaacggtctaccagttggggacaaccattacatgcaacaggttataactctgatattggatcaacatgaccaatgcccgagccattccacattgtagtcctcatacagtaagaaaactacatgagtagcactgctacacacttgcactattacaaaggacccaaacctgcataattcctttgtgtcgatcatgtcatttttgtattgtatgatccaatccagttcataaattggctgaaattttcaatatatgcacggattgccaatactaactattccctgaaaatgtagaacacgaggtttttgagaaactattgcacagactgataaaataaaatgcgtgttgtcctaaatttatccccagaccatggcatgtttgtttttcgcgaacgcgcaaaagaactgcacgtcaatatattagaagaaagtagagtttagttacacgacggcatgtttgttacgtcaatccctcttgattaatcagtagaaaacaacttcagaagcgtgcacgcaagatataaataaacatagattatacaccttcgccagaagcaaaatggagaacagtaagtccatcgttgttgagcttttcagtatcagctccatgatcaagaagataccgcaccatgtccgcattcccggaattgatcgcaaatgtcaaggccgtttcacctgtcaaccaacgataccagaaaccgagaaaagcctgacgcaattgttttgccaccaatttgagcgcacgatcaaccagagtagagcaatgcagctacactcagctatcaacataaaaactaggaatctcgaagagagaagcgcacgtcacacacctctgtcctcgacggcgtcaatatccacacgaagctcctcgagcaggtacccgcaaacgggcaggctcccccggccggcggcgaggtgcagcgcgccgacgccgttgccgtccctcacggcccccaccttgtcgccgaggcggcggccgtccccctcgtccagcgccctcgccatctctgcaagggacaccccggcccgaacccaaatcagcgacgagacaccgacgaacgaagcgggagatcgatcggagaggggagctccagtcggagttggcgcgtactcctgacgaggcggaggttgccgtcgaaggccgcctggaggaggacctcctccagcgagccgggggcgagggcggcggcgccggcggctgcggctggggggctgggcctgggctccggcggtgtggatcgcggcgggaggcgcgcggcggaggaggagggagggaagcgaggcggcgccat
More
|
||||||||||
| CDS seq | atggcgccgcctcgcttccctccctcctcctccgccgcgcgcctcccgccgcgatccacaccgccggagcccaggcccagccccccagccgcagccgccggcgccgccgccctcgcccccggctcgctggaggaggtcctcctccaggcggccttcgacggcaacctccgcctcgtcaggaagatggcgagggcgctggacgagggggacggccgccgcctcggcgacaaggtgggggccgtgagggacggcaacggcgtcggcgcgctgcacctcgccgccggccgggggagcctgcccgtttgcgggtacctgctcgaggagcttcgtgtggatattgacgccgtcgaggacagaggtgaaacggccttgacatttgcgatcaattccgggaatgcggacatggtgcggtatcttcttgatcatggagctgatactgaaaagctcaacaacgatggacttactgttctccattttgcttctggcgaagaagttgccgcactttgtggtgcgcggaaagatgttgagaccctatttcctgtcacttctcgtattccgtgtgtgcacgattggactgttgatggaatcattaattatgcaaagtcactgcctgatgtgaaggatgaagagttttgcgaagctatgcttgatatgggaaaatttcaaggccgtgaagcagtcaagaataaagattatcgtggtgccatgcacatttataccaaggctattgctctcaatactagagatgcatctttgttctcaaataggagcctttgttggctgaaattgggtgagggggagaaggctttgatagatgctgaagcttgcaggatgatgcaaccaaactggccagaagcctgctaccgtcaaggagctgctctaatgttactgaaggtgggacataaatgctctgatcatcttttgaagattttgtaa
More
|
||||||||||
| Protein seq | MAPPRFPPSSSAARLPPRSTPPEPRPSPPAAAAGAAALAPGSLEEVLLQAAFDGNLRLVRKMARALDEGDGRRLGDKVGAVRDGNGVGALHLAAGRGSLPVCGYLLEELRVDIDAVEDRGETALTFAINSGNADMVRYLLDHGADTEKLNNDGLTVLHFASGEEVAALCGARKDVETLFPVTSRIPCVHDWTVDGIINYAKSLPDVKDEEFCEAMLDMGKFQGREAVKNKDYRGAMHIYTKAIALNTRDASLFSNRSLCWLKLGEGEKALIDAEACRMMQPNWPEACYRQGAALMLLKVGHKCSDHLLKIL |
||||||||||
| Function | Tetratricopeptide repeat protein 28 [UniProtKB/Swiss-Prot:Q96AY4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0017680 | OsCMeo_02g0017680.01 | Chr02 | 17413122 | 17420172 | - | NAM | ||
| CDS seq | atggcgccgcctcgcttccctccctcctcctccgccgcgcgcctcccgccgcgatccacaccgccggagcccaggcccagccccccagccgcagccgccggcgccgccgccctcgcccccggctcgctggaggaggtcctcctccaggcggccttcgacggcaacctccgcctcgtcaggaagatggcgagggcgctggacgagggggacggccgccgcctcggcgacaaggtgggggccgtgagggacggcaacggcgtcggcgcgctgcacctcgccgccggccgggggagcctgcccgtttgcgggtacctgctcgaggagcttcgtgtggatattgacgccgtcgaggacagaggtgaaacggccttgacatttgcgatcaattccgggaatgcggacatggtgcggtatcttcttgatcatggagctgatactgaaaagctcaacaacgatggacttactgttctccattttgcttctggcgaagaagttgccgcactttgtggtgcgcggaaagatgttgagaccctatttcctgtcacttctcgtattccgtgtgtgcacgattggactgttgatggaatcattaattatgcaaagtcactgcctgatgtgaaggatgaagagttttgcgaagctatgcttgatatgggaaaatttcaaggccgtgaagcagtcaagaataaagattatcgtggtgccatgcacatttataccaaggctattgctctcaatactagagatgcatctttgttctcaaataggagcctttgttggctgaaattgggtgagggggagaaggctttgatagatgctgaagcttgcaggatgatgcaaccaaactggccagaagcctgctaccgtcaaggagctgctctaatgttactgaaggtgggacataaatgctctgatcatcttttgaagattttgtaa
More
|
|||||||
| Protein seq | MAPPRFPPSSSAARLPPRSTPPEPRPSPPAAAAGAAALAPGSLEEVLLQAAFDGNLRLVRKMARALDEGDGRRLGDKVGAVRDGNGVGALHLAAGRGSLPVCGYLLEELRVDIDAVEDRGETALTFAINSGNADMVRYLLDHGADTEKLNNDGLTVLHFASGEEVAALCGARKDVETLFPVTSRIPCVHDWTVDGIINYAKSLPDVKDEEFCEAMLDMGKFQGREAVKNKDYRGAMHIYTKAIALNTRDASLFSNRSLCWLKLGEGEKALIDAEACRMMQPNWPEACYRQGAALMLLKVGHKCSDHLLKIL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0492600 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g29110 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0492600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0017640 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0017770 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0017650 | SBH | 0.0 | 0.0 | 0.306174 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0017590 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0017510 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0286300 | RBH | 0 | 0 | 0.005726 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0017290 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0307800 | RBH | 0 | 0.0292085 | 0.352694 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0017790 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017390 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0017930 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0017710 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0017420 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G017870 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0017600 | RBH | 0.0 | 0.0 | 0.0 |
