Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsCMeo_02g0002840		OGI:02006570 \| 16/16			CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)			Chr02:1886889-1889853		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		NLP6, OsNLP6, NLP6.1
DNA seq		GAAGCAATTTGTGCCTTTCTCTTTCCGGTTATTATTCAAGATGAAACAATGTTCATGGTATATTGACACTCTCTAAGGCATGTTCCTTTTTACAGTGATTTTTGACAGGTCTGAACTTTCTTGTATGTGTATCAGTAGTAAAAACTTGAGAAATCTGTTTGATGTTCCTGCTACTGGTTTCACACTTTCAGCTACATTTTTTACAACTAATCTGAGCTAGCGCAGGAACTCCCGATGTTATCAGCTACCTCCTGGACCATCAGCCTGACGACCACCGGAGCCGCCGCTCCGGAGCCTGACCTCGCCGTCACCGACATCGACGGCAATGCCGGGACGACGTCGAGGCACTCCTGGAAGTCGGCGTCGCAGGACAGAAGCACCCACTCGTGGTCGTCGTCCAGGTACTTGACGTCGAAGGCGCCGGCGTCCAGGCTCAGCCGCTTGGCCACCACCGCCTTCACCGCCGCGACGCCGGCTGAGCACGGCACCCTGAACCTGATGATGTCACCTCTGTGGCTGGCCTTGATGGTGACCACGCCGTCGCCATTGCCGCACCTCGGAGGTTTTCGCAATGCAGTTTTGGCGTGAGATGGCGGCGCCTGGCATGATCCATGGGAGGAGGTCTCTCCTACGGTACTTGACAGGCATGGCCGCGGTGGCGGCGGCGGCGGAGGGAGAAGAAGAGCTGGGTGAGCAGGCATGGCCACCGGCGGCGACGGCGAGCAGTTCACGGATTCCATGACGCGCTTCATCTTGTCGAGGGAGCGGTTCACCTTGCTGATCTTGCGAAATGGCCACCTTGGGATGCCATGCTGCCTGCAGATGCGTTTCATTGTTGTTGGGCATACTGCAAAACAAGAGGATAAAACTGTCACCTGGTGATCCAACTTTCAGTGGTTGCGTGTTAATTTGCGCATAAACATCAGGATTTTGATGAAGATAATCCACTGAATATCCAGCTGATTCATTTAACTCATCAATTATCATGATGATTATATGCAGGTTGTTGGCAAGTGTGATGTTGTCTTACCACCGAGGCTTCTTGCAGCATCCTTCAAGCTACCAGAGAAGTGTTTCTGCAGCTCCTCCAAAGTGACAGATTTCTCAGCTTTTCCTCTTTTCGTCTTGTTCTTGCCAACTTGTGATGTAGGATCCTCATTTCTGATTTGATCTGCATTGTGAATGTTAAGCTCACCAATGTTTGTGTTCTCCAGCAGCTGCAGATCCTCCTCGTCCGAGCATCTTTGATCATCTCCAAGATCATCCATTTCATGCCTTAGTTGGTGATCACCATCTGCCATAGTATCCAAGAACAAATCATCCAAGTTGCTGATCACAATGGCTTTCAGGTTGCCGGAGCATTGCTTGATCGTGGCGGAGACGGCGTCCACCGCCGCCTTCTGCTCCGCGACGCCGGTGCAGTCCGGCGGGAGGAAGAGCTCCAGCACGACGCAGTCCTCTTCGTCGCCGGCGGTGGCGGCGGCGGCGTCCGCCATGGCCGCCGCGCTGAGCTCAGCGCGTAGCACGAGGCATCCGGCGAGGCCGTACATGCCAGCGTAGTGCGCGAGAGGGTAGTCGTCCTTGGAGCACCGCGCGACGTCGGCGCAGAGGCGGCCGCCGCCCGGCGCGCGCGCCGCGGTGCCGACGAGCCCCTGGCCACGCTGCAGGTGGTGCTCGACGCAGGCGTCGCGGAAGCCCCGCGCGTCCGCGCCGGCGGCGAGGTGGAACGGCGCGCCGGCGGTCGTCAGCGCGGCCTTCTCCGTGTCCTCGCCGCCGCCGCCGCAGCTCCAGCATCTCACCCATGTCTGTGCCAATGGCAGCTTGTGAGCTTCGCACACCGTGATCAGGAGCTCCGATACCTCGGCCATGGCCGCCCGGGTCGCATCTCGATGGACTATCTGGTTCACGGCAAGCGAGTAACACTGGATCAGTAGATGAACGGATCATGCAATTTCTCGTGAAATTTCATGTGATCTCAACTCTCACCTCGGCTGCACGGTTGCAAATCCCTGCACCTCTCAGTGACACTGCCTGCATATGAACACAAGAAATGTTAATCACTTCACTAATCTAATCACTCCTGCTAATCATTTCTTGATCGAGACAGAGAGATTACCCGAAGAGCGTTGCAGAGGTTGGCGACCTCGCCGGAGACGCGGAGCAGCGGGGCGGTGGTGACGAGCTCGAGCACGGCGAGGGGGGAGCTCGCGTCGTCGGGGTCAAGGATGGGGAGGGCGAGGCTGCCCTGGATGTCGTAGATGAGCGCGTAGCTAATGCGGGCGTACTCGCCGCTGCCGTAGCACTGCACGTTGGGCGTCCACTCCGGCGCCGTCGCGTCGAACGCCCTGGCAGGAAGCCCCTGCTCGTCGGCGGCGGCGGCGCCGCCGACGGGGAAGACGCGCGTGAGGGAGACGGTCCTGTACTGGAACAGGCGGTGGCACTGCGACGCCAGGACGAACGGCTGCCCCCGCGTGGCGAGCACGCGCCGGGCGCCGTCCCTCGCCGGCGCCCACACCTGGACCATCCACCCGCCGCCGCCGTCGCCCGCCGCCTCCTTGTACAGCCGCAGCGCCCGCGCGATCCGCTGCTTCACCGCGACGGCCGCCGCCTCCTCCGTCCCCGGCGATCCCCCTCCCCCTCCCTCGCTCCCACCTGCGCACGCACGCATACAAACAAACACCTTCATCTCATGGACCATCTCGACGCGTTCTTGCAGATCAAGAAGCTCAAATCAAGCGCATCGGCGTGGCGCCTACACGGACGTTCACCGGCGGCGCCGCCGCGTTGGAGGAGGAGGTTGAAGTCGCCAACAACGCGCTCCATGTCGGCCTCCACCTCAACCACCAAGACCGATCCACCACGCAGACCAACCAAACAAAGAAGAAGACGATGCGAATATGCGACCCGAATCGATGGCAGCTACCGCTCCATCTCCATCTCCATCTGCATGGCGCGACCAATGTCG More
CDS seq		ATGGAGCGCGTTGTTGGCGACTTCAACCTCCTCCTCCAACGCGGCGGCGCCGCCGGTGAACGTGGGAGCGAGGGAGGGGGAGGGGGATCGCCGGGGACGGAGGAGGCGGCGGCCGTCGCGGTGAAGCAGCGGATCGCGCGGGCGCTGCGGCTGTACAAGGAGGCGGCGGGCGACGGCGGCGGCGGGTGGATGGTCCAGGTGTGGGCGCCGGCGAGGGACGGCGCCCGGCGCGTGCTCGCCACGCGGGGGCAGCCGTTCGTCCTGGCGTCGCAGTGCCACCGCCTGTTCCAGTACAGGACCGTCTCCCTCACGCGCGTCTTCCCCGTCGGCGGCGCCGCCGCCGCCGACGAGCAGGGGCTTCCTGCCAGGGCGTTCGACGCGACGGCGCCGGAGTGGACGCCCAACGTGCAGTGCTACGGCAGCGGCGAGTACGCCCGCATTAGCTACGCGCTCATCTACGACATCCAGGGCAGCCTCGCCCTCCCCATCCTTGACCCCGACGACGCGAGCTCCCCCCTCGCCGTGCTCGAGCTCGTCACCACCGCCCCGCTGCTCCGCGTCTCCGGCGAGGTCGCCAACCTCTGCAACGCTCTTCGGGCAGTGTCACTGAGAGGTGCAGGGATTTGCAACCGTGCAGCCGAGTGTTACTCGCTTGCCGTGAACCAGATAGTCCATCGAGATGCGACCCGGGCGGCCATGGCCGAGGTATCGGAGCTCCTGATCACGGTGTGCGAAGCTCACAAGCTGCCATTGGCACAGACATGGGTGAGATGCTGGAGCTGCGGCGGCGGCGGCGAGGACACGGAGAAGGCCGCGCTGACGACCGCCGGCGCGCCGTTCCACCTCGCCGCCGGCGCGGACGCGCGGGGCTTCCGCGACGCCTGCGTCGAGCACCACCTGCAGCGTGGCCAGGGGCTCGTCGGCACCGCGGCGCGCGCGCCGGGCGGCGGCCGCCTCTGCGCCGACGTCGCGCGGTGCTCCAAGGACGACTACCCTCTCGCGCACTACGCTGGCATGTACGGCCTCGCCGGATGCCTCGTGCTACGCGCTGAGCTCAGCGCGGCGGCCATGGCGGACGCCGCCGCCGCCACCGCCGGCGACGAAGAGGACTGCGTCGTGCTGGAGCTCTTCCTCCCGCCGGACTGCACCGGCGTCGCGGAGCAGAAGGCGGCGGTGGACGCCGTCTCCGCCACGATCAAGCAATGCTCCGGCAACCTGAAAGCCATTGTGATCAGCAACTTGGATGATTTGTTCTTGGATACTATGGCAGATGGTGATCACCAACTAAGGCATGAAATGGATGATCTTGGAGATGATCAAAGATGCTCGGACGAGGAGGATCTGCAGCTGCTGGAGAACACAAACATTGGTGAGCTTAACATTCACAATGCAGATCAAATCAGAAATGAGGATCCTACATCACAAGTTGGCAAGAACAAGACGAAAAGAGGAAAAGCTGAGAAATCTGTCACTTTGGAGGAGCTGCAGAAACACTTCTCTGGTAGCTTGAAGGATGCTGCAAGAAGCCTCGGTGTATGCCCAACAACAATGAAACGCATCTGCAGGCAGCATGGCATCCCAAGGTGGCCATTTCGCAAGATCAGCAAGGTGAACCGCTCCCTCGACAAGATGAAGCGCGTCATGGAATCCGTGAACTGCTCGCCGTCGCCGCCGGTGGCCATGCCTGCTCACCCAGCTCTTCTTCTCCCTCCGCCGCCGCCGCCACCGCGGCCATGCCTGTCAAGTACCGTAGGAGAGACCTCCTCCCATGGATCATGCCAGGCGCCGCCATCTCACGCCAAAACTGCATTGCGAAAACCTCCGAGGTGCGGCAATGGCGACGGCGTGGTCACCATCAAGGCCAGCCACAGAGGTGACATCATCAGGTTCAGGGTGCCGTGCTCAGCCGGCGTCGCGGCGGTGAAGGCGGTGGTGGCCAAGCGGCTGAGCCTGGACGCCGGCGCCTTCGACGTCAAGTACCTGGACGACGACCACGAGTGGGTGCTTCTGTCCTGCGACGCCGACTTCCAGGAGTGCCTCGACGTCGTCCCGGCATTGCCGTCGATGTCGGTGACGGCGAGGTCAGGCTCCGGAGCGGCGGCTCCGGTGGTCGTCAGGCTGATGGTCCAGGAGGTAGCTGATAACATCGGGAGTTCCTGCGCTAGCTCAGATTAG More
Protein seq		MERVVGDFNLLLQRGGAAGERGSEGGGGGSPGTEEAAAVAVKQRIARALRLYKEAAGDGGGGWMVQVWAPARDGARRVLATRGQPFVLASQCHRLFQYRTVSLTRVFPVGGAAAADEQGLPARAFDATAPEWTPNVQCYGSGEYARISYALIYDIQGSLALPILDPDDASSPLAVLELVTTAPLLRVSGEVANLCNALRAVSLRGAGICNRAAECYSLAVNQIVHRDATRAAMAEVSELLITVCEAHKLPLAQTWVRCWSCGGGGEDTEKAALTTAGAPFHLAAGADARGFRDACVEHHLQRGQGLVGTAARAPGGGRLCADVARCSKDDYPLAHYAGMYGLAGCLVLRAELSAAAMADAAAATAGDEEDCVVLELFLPPDCTGVAEQKAAVDAVSATIKQCSGNLKAIVISNLDDLFLDTMADGDHQLRHEMDDLGDDQRCSDEEDLQLLENTNIGELNIHNADQIRNEDPTSQVGKNKTKRGKAEKSVTLEELQKHFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKVNRSLDKMKRVMESVNCSPSPPVAMPAHPALLLPPPPPPPRPCLSSTVGETSSHGSCQAPPSHAKTALRKPPRCGNGDGVVTIKASHRGDIIRFRVPCSAGVAAVKAVVAKRLSLDAGAFDVKYLDDDHEWVLLSCDADFQECLDVVPALPSMSVTARSGSGAAAPVVVRLMVQEVADNIGSSCASSD
Function		Protein NLP6 [UniProtKB/Swiss-Prot:Q8RWY4]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsCMeo_02g0002840	OsCMeo_02g0002840.01	Chr02	1886889	1889853	-	NAM
CDS seq	ATGGAGCGCGTTGTTGGCGACTTCAACCTCCTCCTCCAACGCGGCGGCGCCGCCGGTGAACGTGGGAGCGAGGGAGGGGGAGGGGGATCGCCGGGGACGGAGGAGGCGGCGGCCGTCGCGGTGAAGCAGCGGATCGCGCGGGCGCTGCGGCTGTACAAGGAGGCGGCGGGCGACGGCGGCGGCGGGTGGATGGTCCAGGTGTGGGCGCCGGCGAGGGACGGCGCCCGGCGCGTGCTCGCCACGCGGGGGCAGCCGTTCGTCCTGGCGTCGCAGTGCCACCGCCTGTTCCAGTACAGGACCGTCTCCCTCACGCGCGTCTTCCCCGTCGGCGGCGCCGCCGCCGCCGACGAGCAGGGGCTTCCTGCCAGGGCGTTCGACGCGACGGCGCCGGAGTGGACGCCCAACGTGCAGTGCTACGGCAGCGGCGAGTACGCCCGCATTAGCTACGCGCTCATCTACGACATCCAGGGCAGCCTCGCCCTCCCCATCCTTGACCCCGACGACGCGAGCTCCCCCCTCGCCGTGCTCGAGCTCGTCACCACCGCCCCGCTGCTCCGCGTCTCCGGCGAGGTCGCCAACCTCTGCAACGCTCTTCGGGCAGTGTCACTGAGAGGTGCAGGGATTTGCAACCGTGCAGCCGAGTGTTACTCGCTTGCCGTGAACCAGATAGTCCATCGAGATGCGACCCGGGCGGCCATGGCCGAGGTATCGGAGCTCCTGATCACGGTGTGCGAAGCTCACAAGCTGCCATTGGCACAGACATGGGTGAGATGCTGGAGCTGCGGCGGCGGCGGCGAGGACACGGAGAAGGCCGCGCTGACGACCGCCGGCGCGCCGTTCCACCTCGCCGCCGGCGCGGACGCGCGGGGCTTCCGCGACGCCTGCGTCGAGCACCACCTGCAGCGTGGCCAGGGGCTCGTCGGCACCGCGGCGCGCGCGCCGGGCGGCGGCCGCCTCTGCGCCGACGTCGCGCGGTGCTCCAAGGACGACTACCCTCTCGCGCACTACGCTGGCATGTACGGCCTCGCCGGATGCCTCGTGCTACGCGCTGAGCTCAGCGCGGCGGCCATGGCGGACGCCGCCGCCGCCACCGCCGGCGACGAAGAGGACTGCGTCGTGCTGGAGCTCTTCCTCCCGCCGGACTGCACCGGCGTCGCGGAGCAGAAGGCGGCGGTGGACGCCGTCTCCGCCACGATCAAGCAATGCTCCGGCAACCTGAAAGCCATTGTGATCAGCAACTTGGATGATTTGTTCTTGGATACTATGGCAGATGGTGATCACCAACTAAGGCATGAAATGGATGATCTTGGAGATGATCAAAGATGCTCGGACGAGGAGGATCTGCAGCTGCTGGAGAACACAAACATTGGTGAGCTTAACATTCACAATGCAGATCAAATCAGAAATGAGGATCCTACATCACAAGTTGGCAAGAACAAGACGAAAAGAGGAAAAGCTGAGAAATCTGTCACTTTGGAGGAGCTGCAGAAACACTTCTCTGGTAGCTTGAAGGATGCTGCAAGAAGCCTCGGTGTATGCCCAACAACAATGAAACGCATCTGCAGGCAGCATGGCATCCCAAGGTGGCCATTTCGCAAGATCAGCAAGGTGAACCGCTCCCTCGACAAGATGAAGCGCGTCATGGAATCCGTGAACTGCTCGCCGTCGCCGCCGGTGGCCATGCCTGCTCACCCAGCTCTTCTTCTCCCTCCGCCGCCGCCGCCACCGCGGCCATGCCTGTCAAGTACCGTAGGAGAGACCTCCTCCCATGGATCATGCCAGGCGCCGCCATCTCACGCCAAAACTGCATTGCGAAAACCTCCGAGGTGCGGCAATGGCGACGGCGTGGTCACCATCAAGGCCAGCCACAGAGGTGACATCATCAGGTTCAGGGTGCCGTGCTCAGCCGGCGTCGCGGCGGTGAAGGCGGTGGTGGCCAAGCGGCTGAGCCTGGACGCCGGCGCCTTCGACGTCAAGTACCTGGACGACGACCACGAGTGGGTGCTTCTGTCCTGCGACGCCGACTTCCAGGAGTGCCTCGACGTCGTCCCGGCATTGCCGTCGATGTCGGTGACGGCGAGGTCAGGCTCCGGAGCGGCGGCTCCGGTGGTCGTCAGGCTGATGGTCCAGGAGGTAGCTGATAACATCGGGAGTTCCTGCGCTAGCTCAGATTAG More
Protein seq	MERVVGDFNLLLQRGGAAGERGSEGGGGGSPGTEEAAAVAVKQRIARALRLYKEAAGDGGGGWMVQVWAPARDGARRVLATRGQPFVLASQCHRLFQYRTVSLTRVFPVGGAAAADEQGLPARAFDATAPEWTPNVQCYGSGEYARISYALIYDIQGSLALPILDPDDASSPLAVLELVTTAPLLRVSGEVANLCNALRAVSLRGAGICNRAAECYSLAVNQIVHRDATRAAMAEVSELLITVCEAHKLPLAQTWVRCWSCGGGGEDTEKAALTTAGAPFHLAAGADARGFRDACVEHHLQRGQGLVGTAARAPGGGRLCADVARCSKDDYPLAHYAGMYGLAGCLVLRAELSAAAMADAAAATAGDEEDCVVLELFLPPDCTGVAEQKAAVDAVSATIKQCSGNLKAIVISNLDDLFLDTMADGDHQLRHEMDDLGDDQRCSDEEDLQLLENTNIGELNIHNADQIRNEDPTSQVGKNKTKRGKAEKSVTLEELQKHFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKVNRSLDKMKRVMESVNCSPSPPVAMPAHPALLLPPPPPPPRPCLSSTVGETSSHGSCQAPPSHAKTALRKPPRCGNGDGVVTIKASHRGDIIRFRVPCSAGVAAVKAVVAKRLSLDAGAFDVKYLDDDHEWVLLSCDADFQECLDVVPALPSMSVTARSGSGAAAPVVVRLMVQEVADNIGSSCASSD More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	1.767313	0.649110

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_02g0136000	RBH	0.076285	0.0	0.489991
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os02g04340	RBH	0.052921	0.0	0.045621
Nipponbare \| IRGSP 1.0 \| RAP-db	Os02g0136000	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_02g0002820	RBH	0.0	2.080173	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_02g0002900	RBH	0.0	0.852484	0.146807
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_02g0002810	RBH	0.000000	0.021859	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_02g0002840	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_02G0032400	RBH	0.674695	11.68057	1.2178925
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_02g0002750	RBH	0.000000	0.311114	0.135650
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_02G0033500	RBH	0.7683345	16.8451155	2.257684
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_02g0002820	RBH	0.0	0.000000	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_02g0002750	RBH	0.000000	2.394803	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_02g0002820	RBH	0.0	2.595260	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_02g0002910	RBH	0.0	0.139738	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_02g0002870	RBH	0.0	0.536870	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_02G002850	RBH	0.0	2.101158	0.000000
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_02g0002800	RBH	0.0	0.000000	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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