Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g04340 | OGI:02006570 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:1913425-1916183 | ||||||||
| Gene Symbol | NLP6, OsNLP6, NLP6.1 | ||||||||||
| DNA seq | CTAATCTGAGCTAGCGCAGGAACTCCCGATGTTATCAGCTACCTCCTGGACCATCAGCCTGACGACCACCGGAGCCGCCGCTCCGGAGCCTGACCTCGCCGTCACCGACATCGACGGCAATGCCGGGACGACGTCGAGGCACTCCTGGAAGTCGGCGTCGCAGGACAGAAGCACCCACTCGTGGTCGTCGTCCAGGTACTTGACGTCGAAGGCGCCGGCGTCCAGGCTCAGCCGCTTGGCCACCACCGCCTTCACCGCCGCGACGCCGGCTGAGCACGGCACCCTGAACCTGATGATGTCACCTCTGTGGCTGGCCTTGATGGTGACCACGCCGTCGCCATTGCCGCACCTCGGAGGTTTTCGCAATGCAGTTTTGGCGTGAGATGGCGGCGCCTGGCATGATCCATGGGAGGAGGTCTCTCCTACGGTACTTGACAGGCATGGCCGCGGTGGCGGCGGCGGCGGAGGGAGAAGAAGAGCTGGGTGAGCAGGCATGGCCACCGGCGGCGACGGCGAGCAGTTCACGGATTCCATGACGCGCTTCATCTTGTCGAGGGAGCGGTTCACCTTGCTGATCTTGCGAAATGGCCACCTTGGGATGCCATGCTGCCTGCAGATGCGTTTCATTGTTGTTGGGCATACTGCAAAACAAGAGGATAAAACTGTCACCTGGTGATCCAACTTTCAGTGGTTGCGTGTTAATTTGCGCATAAACATCAGGATTTTGATGAAGATAATCCACTGAATATCCAGCTGATTCATTTAACTCATCAATTATCATGATGATTATATGCAGGTTGTTGGCAAGTGTGATGTTGTCTTACCACCGAGGCTTCTTGCAGCATCCTTCAAGCTACCAGAGAAGTGTTTCTGCAGCTCCTCCAAAGTGACAGATTTCTCAGCTTTTCCTCTTTTCGTCTTGTTCTTGCCAACTTGTGATGTAGGATCCTCATTTCTGATTTGATCTGCATTGTGAATGTTAAGCTCACCAATGTTTGTGTTCTCCAGCAGCTGCAGATCCTCCTCGTCCGAGCATCTTTGATCATCTCCAAGATCATCCATTTCATGCCTTAGTTGGTGATCACCATCTGCCATAGTATCCAAGAACAAATCATCCAAGTTGCTGATCACAATGGCTTTCAGGTTGCCGGAGCATTGCTTGATCGTGGCGGAGACGGCGTCCACCGCCGCCTTCTGCTCCGCGACGCCGGTGCAGTCCGGCGGGAGGAAGAGCTCCAGCACGACGCAGTCCTCTTCGTCGCCGGCGGTGGCGGCGGCGGCGTCCGCCATGGCCGCCGCGCTGAGCTCAGCGCGTAGCACGAGGCATCCGGCGAGGCCGTACATGCCAGCGTAGTGCGCGAGAGGGTAGTCGTCCTTGGAGCACCGCGCGACGTCGGCGCAGAGGCGGCCGCCGCCCGGCGCGCGCGCCGCGGTGCCGACGAGCCCCTGGCCACGCTGCAGGTGGTGCTCGACGCAGGCGTCGCGGAAGCCCCGCGCGTCCGCGCCGGCGGCGAGGTGGAACGGCGCGCCGGCGGTCGTCAGCGCGGCCTTCTCCGTGTCCTCGCCGCCGCCGCCGCAGCTCCAGCATCTCACCCATGTCTGTGCCAATGGCAGCTTGTGAGCTTCGCACACCGTGATCAGGAGCTCCGATACCTCGGCCATGGCCGCCCGGGTCGCATCTCGATGGACTATCTGGTTCACGGCAAGCGAGTAACACTGGATCAGTAGATGAACGGATCATGCAATTTCTCGTGAAATTTCATGTGATCTCAACTCTCACCTCGGCTGCACGGTTGCAAATCCCTGCACCTCTCAGTGACACTGCCTGCATATGAACACAAGAAATGTTAATCACTTCACTAATCTAATCACTCCTGCTAATCATTTCTTGATCGAGACAGAGAGATTACCCGAAGAGCGTTGCAGAGGTTGGCGACCTCGCCGGAGACGCGGAGCAGCGGGGCGGTGGTGACGAGCTCGAGCACGGCGAGGGGGGAGCTCGCGTCGTCGGGGTCAAGGATGGGGAGGGCGAGGCTGCCCTGGATGTCGTAGATGAGCGCGTAGCTAATGCGGGCGTACTCGCCGCTGCCGTAGCACTGCACGTTGGGCGTCCACTCCGGCGCCGTCGCGTCGAACGCCCTGGCAGGAAGCCCCTGCTCGTCGGCGGCGGCGGCGCCGCCGACGGGGAAGACGCGCGTGAGGGAGACGGTCCTGTACTGGAACAGGCGGTGGCACTGCGACGCCAGGACGAACGGCTGCCCCCGCGTGGCGAGCACGCGCCGGGCGCCGTCCCTCGCCGGCGCCCACACCTGGACCATCCACCCGCCGCCGCCGTCGCCCGCCGCCTCCTTGTACAGCCGCAGCGCCCGCGCGATCCGCTGCTTCACCGCGACGGCCGCCGCCTCCTCCGTCCCCGGCGATCCCCCTCCCCCTCCCTCGCTCCCACCTGCGCACGCACGCATACAAACAAACACCTTCATCTCATGGACCATCTCGACGCGTTCTTGCAGATCAAGAAGCTCAAATCAAGCGCATCGGCGTGGCGCCTACACGGACGTTCACCGGCGGCGCCGCCGCGTTGGAGGAGGAGGTTGAAGTCGCCAACAACGCGCTCCATGTCGGCCTCCACCTCAACCACCAAGACCGATCCACCACGCAGACCAACCAAACAAAGAAGAAGACGATGCGAATATGCGACCCGAATCGATGGCAGCTACCGCTCCATCTCCATCTCCATCTGCATGGCGCGACCAATGTCG
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| CDS seq | ATGGAGCGCGTTGTTGGCGACTTCAACCTCCTCCTCCAACGCGGCGGCGCCGCCGGTGAACGTGGGAGCGAGGGAGGGGGAGGGGGATCGCCGGGGACGGAGGAGGCGGCGGCCGTCGCGGTGAAGCAGCGGATCGCGCGGGCGCTGCGGCTGTACAAGGAGGCGGCGGGCGACGGCGGCGGCGGGTGGATGGTCCAGGTGTGGGCGCCGGCGAGGGACGGCGCCCGGCGCGTGCTCGCCACGCGGGGGCAGCCGTTCGTCCTGGCGTCGCAGTGCCACCGCCTGTTCCAGTACAGGACCGTCTCCCTCACGCGCGTCTTCCCCGTCGGCGGCGCCGCCGCCGCCGACGAGCAGGGGCTTCCTGCCAGGGCGTTCGACGCGACGGCGCCGGAGTGGACGCCCAACGTGCAGTGCTACGGCAGCGGCGAGTACGCCCGCATTAGCTACGCGCTCATCTACGACATCCAGGGCAGCCTCGCCCTCCCCATCCTTGACCCCGACGACGCGAGCTCCCCCCTCGCCGTGCTCGAGCTCGTCACCACCGCCCCGCTGCTCCGCGTCTCCGGCGAGGTCGCCAACCTCTGCAACGCTCTTCGGGCAGTGTCACTGAGAGGTGCAGGGATTTGCAACCGTGCAGCCGAGTGTTACTCGCTTGCCGTGAACCAGATAGTCCATCGAGATGCGACCCGGGCGGCCATGGCCGAGGTATCGGAGCTCCTGATCACGGTGTGCGAAGCTCACAAGCTGCCATTGGCACAGACATGGGTGAGATGCTGGAGCTGCGGCGGCGGCGGCGAGGACACGGAGAAGGCCGCGCTGACGACCGCCGGCGCGCCGTTCCACCTCGCCGCCGGCGCGGACGCGCGGGGCTTCCGCGACGCCTGCGTCGAGCACCACCTGCAGCGTGGCCAGGGGCTCGTCGGCACCGCGGCGCGCGCGCCGGGCGGCGGCCGCCTCTGCGCCGACGTCGCGCGGTGCTCCAAGGACGACTACCCTCTCGCGCACTACGCTGGCATGTACGGCCTCGCCGGATGCCTCGTGCTACGCGCTGAGCTCAGCGCGGCGGCCATGGCGGACGCCGCCGCCGCCACCGCCGGCGACGAAGAGGACTGCGTCGTGCTGGAGCTCTTCCTCCCGCCGGACTGCACCGGCGTCGCGGAGCAGAAGGCGGCGGTGGACGCCGTCTCCGCCACGATCAAGCAATGCTCCGGCAACCTGAAAGCCATTGTGATCAGCAACTTGGATGATTTGTTCTTGGATACTATGGCAGATGGTGATCACCAACTAAGGCATGAAATGGATGATCTTGGAGATGATCAAAGATGCTCGGACGAGGAGGATCTGCAGCTGCTGGAGAACACAAACATTGGTGAGCTTAACATTCACAATGCAGATCAAATCAGAAATGAGGATCCTACATCACAAGTTGGCAAGAACAAGACGAAAAGAGGAAAAGCTGAGAAATCTGTCACTTTGGAGGAGCTGCAGAAACACTTCTCTGGTAGCTTGAAGGATGCTGCAAGAAGCCTCGGTGCTGGATATTCAGTGGATTATCTTCATCAAAATCCTGATGTTTATGCGCAAATTAACACGCAACCACTGAAAGTTGGATCACCAGGCAGCATGGCATCCCAAGGTGGCCATTTCGCAAGATCAGCAAGGTGCGGCAATGGCGACGGCGTGGTCACCATCAAGGCCAGCCACAGAGGTGACATCATCAGGTTCAGGGTGCCGTGCTCAGCCGGCGTCGCGGCGGTGAAGGCGGTGGTGGCCAAGCGGCTGAGCCTGGACGCCGGCGCCTTCGACGTCAAGTACCTGGACGACGACCACGAGTGGGTGCTTCTGTCCTGCGACGCCGACTTCCAGGAGTGCCTCGACGTCGTCCCGGCATTGCCGTCGATGTCGGTGACGGCGAGGTCAGGCTCCGGAGCGGCGGCTCCGGTGGTCGTCAGGCTGATGGTCCAGGAGGTAGCTGATAACATCGGGAGTTCCTGCGCTAGCTCAGATTAG
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| Protein seq | MERVVGDFNLLLQRGGAAGERGSEGGGGGSPGTEEAAAVAVKQRIARALRLYKEAAGDGGGGWMVQVWAPARDGARRVLATRGQPFVLASQCHRLFQYRTVSLTRVFPVGGAAAADEQGLPARAFDATAPEWTPNVQCYGSGEYARISYALIYDIQGSLALPILDPDDASSPLAVLELVTTAPLLRVSGEVANLCNALRAVSLRGAGICNRAAECYSLAVNQIVHRDATRAAMAEVSELLITVCEAHKLPLAQTWVRCWSCGGGGEDTEKAALTTAGAPFHLAAGADARGFRDACVEHHLQRGQGLVGTAARAPGGGRLCADVARCSKDDYPLAHYAGMYGLAGCLVLRAELSAAAMADAAAATAGDEEDCVVLELFLPPDCTGVAEQKAAVDAVSATIKQCSGNLKAIVISNLDDLFLDTMADGDHQLRHEMDDLGDDQRCSDEEDLQLLENTNIGELNIHNADQIRNEDPTSQVGKNKTKRGKAEKSVTLEELQKHFSGSLKDAARSLGAGYSVDYLHQNPDVYAQINTQPLKVGSPGSMASQGGHFARSARCGNGDGVVTIKASHRGDIIRFRVPCSAGVAAVKAVVAKRLSLDAGAFDVKYLDDDHEWVLLSCDADFQECLDVVPALPSMSVTARSGSGAAAPVVVRLMVQEVADNIGSSCASSD |
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| Function | Protein NLP3 [UniProtKB/Swiss-Prot:Q5NB82] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g04340 | LOC_Os02g04340.1 | Chr02 | 1913425 | 1916183 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGCGCGTTGTTGGCGACTTCAACCTCCTCCTCCAACGCGGCGGCGCCGCCGGTGAACGTGGGAGCGAGGGAGGGGGAGGGGGATCGCCGGGGACGGAGGAGGCGGCGGCCGTCGCGGTGAAGCAGCGGATCGCGCGGGCGCTGCGGCTGTACAAGGAGGCGGCGGGCGACGGCGGCGGCGGGTGGATGGTCCAGGTGTGGGCGCCGGCGAGGGACGGCGCCCGGCGCGTGCTCGCCACGCGGGGGCAGCCGTTCGTCCTGGCGTCGCAGTGCCACCGCCTGTTCCAGTACAGGACCGTCTCCCTCACGCGCGTCTTCCCCGTCGGCGGCGCCGCCGCCGCCGACGAGCAGGGGCTTCCTGCCAGGGCGTTCGACGCGACGGCGCCGGAGTGGACGCCCAACGTGCAGTGCTACGGCAGCGGCGAGTACGCCCGCATTAGCTACGCGCTCATCTACGACATCCAGGGCAGCCTCGCCCTCCCCATCCTTGACCCCGACGACGCGAGCTCCCCCCTCGCCGTGCTCGAGCTCGTCACCACCGCCCCGCTGCTCCGCGTCTCCGGCGAGGTCGCCAACCTCTGCAACGCTCTTCGGGCAGTGTCACTGAGAGGTGCAGGGATTTGCAACCGTGCAGCCGAGTGTTACTCGCTTGCCGTGAACCAGATAGTCCATCGAGATGCGACCCGGGCGGCCATGGCCGAGGTATCGGAGCTCCTGATCACGGTGTGCGAAGCTCACAAGCTGCCATTGGCACAGACATGGGTGAGATGCTGGAGCTGCGGCGGCGGCGGCGAGGACACGGAGAAGGCCGCGCTGACGACCGCCGGCGCGCCGTTCCACCTCGCCGCCGGCGCGGACGCGCGGGGCTTCCGCGACGCCTGCGTCGAGCACCACCTGCAGCGTGGCCAGGGGCTCGTCGGCACCGCGGCGCGCGCGCCGGGCGGCGGCCGCCTCTGCGCCGACGTCGCGCGGTGCTCCAAGGACGACTACCCTCTCGCGCACTACGCTGGCATGTACGGCCTCGCCGGATGCCTCGTGCTACGCGCTGAGCTCAGCGCGGCGGCCATGGCGGACGCCGCCGCCGCCACCGCCGGCGACGAAGAGGACTGCGTCGTGCTGGAGCTCTTCCTCCCGCCGGACTGCACCGGCGTCGCGGAGCAGAAGGCGGCGGTGGACGCCGTCTCCGCCACGATCAAGCAATGCTCCGGCAACCTGAAAGCCATTGTGATCAGCAACTTGGATGATTTGTTCTTGGATACTATGGCAGATGGTGATCACCAACTAAGGCATGAAATGGATGATCTTGGAGATGATCAAAGATGCTCGGACGAGGAGGATCTGCAGCTGCTGGAGAACACAAACATTGGTGAGCTTAACATTCACAATGCAGATCAAATCAGAAATGAGGATCCTACATCACAAGTTGGCAAGAACAAGACGAAAAGAGGAAAAGCTGAGAAATCTGTCACTTTGGAGGAGCTGCAGAAACACTTCTCTGGTAGCTTGAAGGATGCTGCAAGAAGCCTCGGTGCTGGATATTCAGTGGATTATCTTCATCAAAATCCTGATGTTTATGCGCAAATTAACACGCAACCACTGAAAGTTGGATCACCAGGCAGCATGGCATCCCAAGGTGGCCATTTCGCAAGATCAGCAAGGTGCGGCAATGGCGACGGCGTGGTCACCATCAAGGCCAGCCACAGAGGTGACATCATCAGGTTCAGGGTGCCGTGCTCAGCCGGCGTCGCGGCGGTGAAGGCGGTGGTGGCCAAGCGGCTGAGCCTGGACGCCGGCGCCTTCGACGTCAAGTACCTGGACGACGACCACGAGTGGGTGCTTCTGTCCTGCGACGCCGACTTCCAGGAGTGCCTCGACGTCGTCCCGGCATTGCCGTCGATGTCGGTGACGGCGAGGTCAGGCTCCGGAGCGGCGGCTCCGGTGGTCGTCAGGCTGATGGTCCAGGAGGTAGCTGATAACATCGGGAGTTCCTGCGCTAGCTCAGATTAG
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| Protein seq | MERVVGDFNLLLQRGGAAGERGSEGGGGGSPGTEEAAAVAVKQRIARALRLYKEAAGDGGGGWMVQVWAPARDGARRVLATRGQPFVLASQCHRLFQYRTVSLTRVFPVGGAAAADEQGLPARAFDATAPEWTPNVQCYGSGEYARISYALIYDIQGSLALPILDPDDASSPLAVLELVTTAPLLRVSGEVANLCNALRAVSLRGAGICNRAAECYSLAVNQIVHRDATRAAMAEVSELLITVCEAHKLPLAQTWVRCWSCGGGGEDTEKAALTTAGAPFHLAAGADARGFRDACVEHHLQRGQGLVGTAARAPGGGRLCADVARCSKDDYPLAHYAGMYGLAGCLVLRAELSAAAMADAAAATAGDEEDCVVLELFLPPDCTGVAEQKAAVDAVSATIKQCSGNLKAIVISNLDDLFLDTMADGDHQLRHEMDDLGDDQRCSDEEDLQLLENTNIGELNIHNADQIRNEDPTSQVGKNKTKRGKAEKSVTLEELQKHFSGSLKDAARSLGAGYSVDYLHQNPDVYAQINTQPLKVGSPGSMASQGGHFARSARCGNGDGVVTIKASHRGDIIRFRVPCSAGVAAVKAVVAKRLSLDAGAFDVKYLDDDHEWVLLSCDADFQECLDVVPALPSMSVTARSGSGAAAPVVVRLMVQEVADNIGSSCASSD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.052921 | 0.0 | 0.045621 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0136000 | RBH | 0.076285 | 0.0 | 0.489991 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0136000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0002820 | RBH | 0.0 | 2.080173 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0002900 | RBH | 0.0 | 0.852484 | 0.146807 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0002840 | RBH | 0.0 | 1.767313 | 0.649110 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0002810 | RBH | 0.000000 | 0.021859 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0002840 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0032400 | RBH | 0.674695 | 11.68057 | 1.2178925 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0002750 | RBH | 0.000000 | 0.311114 | 0.135650 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0033500 | RBH | 0.7683345 | 16.8451155 | 2.257684 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0002820 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0002750 | RBH | 0.000000 | 2.394803 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0002820 | RBH | 0.0 | 2.595260 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0002910 | RBH | 0.0 | 0.139738 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0002870 | RBH | 0.0 | 0.536870 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G002850 | RBH | 0.0 | 2.101158 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0002800 | RBH | 0.0 | 0.000000 | 0.0 |
