Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0047560 | OGI:01123710 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:43342291-43343324 | ||||||||
| Gene Symbol | CYP71AA2, OsCYP71AA2 | ||||||||||
| DNA seq | ccaaggcgcgcccgctccttccgccgcgtccgcgaggccgagccggcgaggctcgtgcgcgccgtcgccgcgtccccggcgtggccgctcgtgaacgtcgtcggcggcgagcatgtcgcggccatgatgaccgccgtcgacgcgcggccggtgcccgcggcaggaggagtacctggaggagctgggcaaggtggcgaagctcgccgccggcttcaacctggtcgacctgttcccggagtcgcggctcgtgcgggcagcgcaagcggcccacgggaagatccacagcatcatggacgccatggtccaggaccatctgaaggcgatggaggagcgcagagaggaagtcgcagatggcgtcgtcgacgacggcgacggcgacggcgccgagagggatgaagagctccttagcatcctactgaggtttcagagggatggtgggttagggatcactctcacaaacggaaaccatcagcgcgacagtgtttgtaattaattaagcatgttaccatctcactctagctcatttgtcaatgtcacccgcgaaaggtttgtctcactctttttgtattttgcgggaacgtcctttttttcatgctagttaaatagttataaaaaaaagcaaagatagtttgatatttgatatatcacctcacaagtatatatacaaattcaaatttgacttcttaatgttgtaacaaaataatgtaatatgatttaatagtaccagataataacttctagctagtctagttttgtaaagtcctgtgtagataccatctcatatctataattttagggtatcttggctggcggctctgatacaacaactacaactgttatgtgggctatgtccgagctattgaggtgccctcgcgcaatgcaaggtagaaacaaggtggatgaggcatacatattggagggtcccttcaatattacatgcaattggtcatcaaagaaacgttaagattgcaccttccattccctttgcttttcccaaggttatgtaccgaaacatgcaagataatgggatttga
More
|
||||||||||
| CDS seq | atgatgaccgccgtcgacgcgcggccggaggagtacctggaggagctgggcaaggtggcgaagctcgccgccggcttcaacctggtcgacctgttcccggagtcgcggctcgtgcgggcagcgcaagcggcccacgggaagatccacagcatcatggacgccatggtccaggaccatctgaaggcgatggaggagcgcagagaggaagtcgcagatggcgtcgtcgacgacggcgacggcgacggcgccgagagggatgaagagctccttagcatcctactgaggtttcagagggatggtgggttagggatcactctcacaaacggaaaccatcagcgcgacagtgtttgtgccctcgcgcaatgcaaggtagaaacaaggtggatgaggcatacatattggagggtcccttcaatattacatgcaattggtcatcaaagaaacgttaagattgcaccttccattccctttgcttttcccaaggttatgtaccgaaacatgcaagataatgggatttga
More
|
||||||||||
| Protein seq | MMTAVDARPEEYLEELGKVAKLAAGFNLVDLFPESRLVRAAQAAHGKIHSIMDAMVQDHLKAMEERREEVADGVVDDGDGDGAERDEELLSILLRFQRDGGLGITLTNGNHQRDSVCALAQCKVETRWMRHTYWRVPSILHAIGHQRNVKIAPSIPFAFPKVMYRNMQDNGI |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0047560 | OsCMeo_01g0047560.01 | Chr01 | 43342291 | 43343324 | + | NAM | ||
| CDS seq | atgatgaccgccgtcgacgcgcggccggaggagtacctggaggagctgggcaaggtggcgaagctcgccgccggcttcaacctggtcgacctgttcccggagtcgcggctcgtgcgggcagcgcaagcggcccacgggaagatccacagcatcatggacgccatggtccaggaccatctgaaggcgatggaggagcgcagagaggaagtcgcagatggcgtcgtcgacgacggcgacggcgacggcgccgagagggatgaagagctccttagcatcctactgaggtttcagagggatggtgggttagggatcactctcacaaacggaaaccatcagcgcgacagtgtttgtgccctcgcgcaatgcaaggtagaaacaaggtggatgaggcatacatattggagggtcccttcaatattacatgcaattggtcatcaaagaaacgttaagattgcaccttccattccctttgcttttcccaaggttatgtaccgaaacatgcaagataatgggatttga
More
|
|||||||
| Protein seq | MMTAVDARPEEYLEELGKVAKLAAGFNLVDLFPESRLVRAAQAAHGKIHSIMDAMVQDHLKAMEERREEVADGVVDDGDGDGAERDEELLSILLRFQRDGGLGITLTNGNHQRDSVCALAQCKVETRWMRHTYWRVPSILHAIGHQRNVKIAPSIPFAFPKVMYRNMQDNGI |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0957800 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g72730 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0957800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0047600 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0047090 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046970 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0046490 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0691800 | RBH | 0.0368855 | 0.307493 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0046000 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0693400 | SBH | 0.2078075 | 0.033162 | 0.0100245 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0046590 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0046430 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0046760 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0046750 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0046520 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G046780 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
