Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0042660 | OGI:01113960 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:39471794-39473408 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acgttaagcgacaaagtttgataaataatctctaatcgcgtagacggcgccggcgccggcgatggcgtcgccgggcgggaaggggctggtcgcgtgcaacgcggccatctcccgctgctcgcgcgcggggctgcaccggcgggcgctggcgctgttcaccgagatgcgcgcgcggggactccgcgccgacgagtacaccctcccgccgatcctcaactccgccgcgctgctccgcgccccgcccgcggcggcgctccacgcgctcctcctccgcgcggggctcgcgtcgcacctccatgtcgccaacgccctcgtcgacgcctacgccaagctgtcccgcctcggagccgcgcgggcggtgttcgacgaaatgccgcgccgggacgtggtcacctggacctccctcgtcaccgggctcgcccgcgccggatcccacggcctggccgttcgcgcctaccgcgacatggtcgccgctggggtcgccaccgacgagttcgccgtcgcggccgtgctcagctcgtgcgccggctcgaccgcgctcgagctgggccggtcggtgcacgccgcggcggtccggtccgggcacgagccgttcctctcggtcggcaactcgctcgtgtccatgtacgccaagaccggctcgctccgcgacgcgcgcacggtgttcgacgcgatgcgctcccggtgcgccatcacgtggacggcgctgatcgtcgggtacgcgcagaacggccggggcagggagtccctcgccgtctacgccgacatggcccgctccggctgcaggccggactacgtcaccttcgtcggcctgctcttcgcctgcagccacgccgggctgctcgacgccggccgcgcccacttccagtccatgcaatccgagcacggcatctccccggggccggaccactacgcctgcatggtcgacctgctcggccgcgccggccgcctcggcgaggccgtcgacctgctcgaccggagcccggcggccgagctggacgccacggtctggaaggccctcctcgccgcgtgccggactcaccggaacgcggcgctcgccgagcgcgcggccgggatggtgtggaggctggatccgacggacgccatgccgtacgtcatgctgtccaacctctactcgcgggcgcggcggtggggcgacgtggcgagggtgcgcgcgctgatgaggtcgcggggcatcagcaaggagcccgggtgcagctgggtggtggtcgccggcgtgacgcacgtgttccacgccggggacagggatcaccagcgggcggcggagatctaccggaaggcggaggagatggcggcgaggatccgggctcgggggcacgtgccggacaccgagtgggcgctgcaggacgaggcgccggaggggagggagatggggctggctcaccacggcgagaggctcgccgtcgcgttcggcctcctcgccgtgccagccgccgcgcccatccgcgtgtacaagaacctccgggtgtgcggcgactgccacgccgcgatcaagatggtcgccgaggtgtacggcagggagatcatactgagagactccaactgcttccatcacatgaaggatggttcatgttcttgtggagattactggtaa
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| CDS seq | atggcgtcgccgggcgggaaggggctggtcgcgtgcaacgcggccatctcccgctgctcgcgcgcggggctgcaccggcgggcgctggcgctgttcaccgagatgcgcgcgcggggactccgcgccgacgagtacaccctcccgccgatcctcaactccgccgcgctgctccgcgccccgcccgcggcggcgctccacgcgctcctcctccgcgcggggctcgcgtcgcacctccatgtcgccaacgccctcgtcgacgcctacgccaagctgtcccgcctcggagccgcgcgggcggtgttcgacgaaatgccgcgccgggacgtggtcacctggacctccctcgtcaccgggctcgcccgcgccggatcccacggcctggccgttcgcgcctaccgcgacatggtcgccgctggggtcgccaccgacgagttcgccgtcgcggccgtgctcagctcgtgcgccggctcgaccgcgctcgagctgggccggtcggtgcacgccgcggcggtccggtccgggcacgagccgttcctctcggtcggcaactcgctcgtgtccatgtacgccaagaccggctcgctccgcgacgcgcgcacggtgttcgacgcgatgcgctcccggtgcgccatcacgtggacggcgctgatcgtcgggtacgcgcagaacggccggggcagggagtccctcgccgtctacgccgacatggcccgctccggctgcaggccggactacgtcaccttcgtcggcctgctcttcgcctgcagccacgccgggctgctcgacgccggccgcgcccacttccagtccatgcaatccgagcacggcatctccccggggccggaccactacgcctgcatggtcgacctgctcggccgcgccggccgcctcggcgaggccgtcgacctgctcgaccggagcccggcggccgagctggacgccacggtctggaaggccctcctcgccgcgtgccggactcaccggaacgcggcgctcgccgagcgcgcggccgggatggtgtggaggctggatccgacggacgccatgccgtacgtcatgctgtccaacctctactcgcgggcgcggcggtggggcgacgtggcgagggtgcgcgcgctgatgaggtcgcggggcatcagcaaggagcccgggtgcagctgggtggtggtcgccggcgtgacgcacgtgttccacgccggggacagggatcaccagcgggcggcggagatctaccggaaggcggaggagatggcggcgaggatccgggctcgggggcacgtgccggacaccgagtgggcgctgcaggacgaggcgccggaggggagggagatggggctggctcaccacggcgagaggctcgccgtcgcgttcggcctcctcgccgtgccagccgccgcgcccatccgcgtgtacaagaacctccgggtgtgcggcgactgccacgccgcgatcaagatggtcgccgaggtgtacggcagggagatcatactgagagactccaactgcttccatcacatgaaggatggttcatgttcttgtggagattactggtaa
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| Protein seq | MASPGGKGLVACNAAISRCSRAGLHRRALALFTEMRARGLRADEYTLPPILNSAALLRAPPAAALHALLLRAGLASHLHVANALVDAYAKLSRLGAARAVFDEMPRRDVVTWTSLVTGLARAGSHGLAVRAYRDMVAAGVATDEFAVAAVLSSCAGSTALELGRSVHAAAVRSGHEPFLSVGNSLVSMYAKTGSLRDARTVFDAMRSRCAITWTALIVGYAQNGRGRESLAVYADMARSGCRPDYVTFVGLLFACSHAGLLDAGRAHFQSMQSEHGISPGPDHYACMVDLLGRAGRLGEAVDLLDRSPAAELDATVWKALLAACRTHRNAALAERAAGMVWRLDPTDAMPYVMLSNLYSRARRWGDVARVRALMRSRGISKEPGCSWVVVAGVTHVFHAGDRDHQRAAEIYRKAEEMAARIRARGHVPDTEWALQDEAPEGREMGLAHHGERLAVAFGLLAVPAAAPIRVYKNLRVCGDCHAAIKMVAEVYGREIILRDSNCFHHMKDGSCSCGDYW |
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| Function | Pentatricopeptide repeat-containing protein At2g03880, mitochondrial [UniProtKB/Swiss-Prot:Q9SI53] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0042660 | OsCMeo_01g0042660.01 | Chr01 | 39471794 | 39473408 | + | NAM | ||
| CDS seq | atggcgtcgccgggcgggaaggggctggtcgcgtgcaacgcggccatctcccgctgctcgcgcgcggggctgcaccggcgggcgctggcgctgttcaccgagatgcgcgcgcggggactccgcgccgacgagtacaccctcccgccgatcctcaactccgccgcgctgctccgcgccccgcccgcggcggcgctccacgcgctcctcctccgcgcggggctcgcgtcgcacctccatgtcgccaacgccctcgtcgacgcctacgccaagctgtcccgcctcggagccgcgcgggcggtgttcgacgaaatgccgcgccgggacgtggtcacctggacctccctcgtcaccgggctcgcccgcgccggatcccacggcctggccgttcgcgcctaccgcgacatggtcgccgctggggtcgccaccgacgagttcgccgtcgcggccgtgctcagctcgtgcgccggctcgaccgcgctcgagctgggccggtcggtgcacgccgcggcggtccggtccgggcacgagccgttcctctcggtcggcaactcgctcgtgtccatgtacgccaagaccggctcgctccgcgacgcgcgcacggtgttcgacgcgatgcgctcccggtgcgccatcacgtggacggcgctgatcgtcgggtacgcgcagaacggccggggcagggagtccctcgccgtctacgccgacatggcccgctccggctgcaggccggactacgtcaccttcgtcggcctgctcttcgcctgcagccacgccgggctgctcgacgccggccgcgcccacttccagtccatgcaatccgagcacggcatctccccggggccggaccactacgcctgcatggtcgacctgctcggccgcgccggccgcctcggcgaggccgtcgacctgctcgaccggagcccggcggccgagctggacgccacggtctggaaggccctcctcgccgcgtgccggactcaccggaacgcggcgctcgccgagcgcgcggccgggatggtgtggaggctggatccgacggacgccatgccgtacgtcatgctgtccaacctctactcgcgggcgcggcggtggggcgacgtggcgagggtgcgcgcgctgatgaggtcgcggggcatcagcaaggagcccgggtgcagctgggtggtggtcgccggcgtgacgcacgtgttccacgccggggacagggatcaccagcgggcggcggagatctaccggaaggcggaggagatggcggcgaggatccgggctcgggggcacgtgccggacaccgagtgggcgctgcaggacgaggcgccggaggggagggagatggggctggctcaccacggcgagaggctcgccgtcgcgttcggcctcctcgccgtgccagccgccgcgcccatccgcgtgtacaagaacctccgggtgtgcggcgactgccacgccgcgatcaagatggtcgccgaggtgtacggcagggagatcatactgagagactccaactgcttccatcacatgaaggatggttcatgttcttgtggagattactggtaa
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| Protein seq | MASPGGKGLVACNAAISRCSRAGLHRRALALFTEMRARGLRADEYTLPPILNSAALLRAPPAAALHALLLRAGLASHLHVANALVDAYAKLSRLGAARAVFDEMPRRDVVTWTSLVTGLARAGSHGLAVRAYRDMVAAGVATDEFAVAAVLSSCAGSTALELGRSVHAAAVRSGHEPFLSVGNSLVSMYAKTGSLRDARTVFDAMRSRCAITWTALIVGYAQNGRGRESLAVYADMARSGCRPDYVTFVGLLFACSHAGLLDAGRAHFQSMQSEHGISPGPDHYACMVDLLGRAGRLGEAVDLLDRSPAAELDATVWKALLAACRTHRNAALAERAAGMVWRLDPTDAMPYVMLSNLYSRARRWGDVARVRALMRSRGISKEPGCSWVVVAGVTHVFHAGDRDHQRAAEIYRKAEEMAARIRARGHVPDTEWALQDEAPEGREMGLAHHGERLAVAFGLLAVPAAAPIRVYKNLRVCGDCHAAIKMVAEVYGREIILRDSNCFHHMKDGSCSCGDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 1.380472 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0884800 | RBH | 0.000000 | 0.091105 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g66160 | RBH | 0.000000 | 0.319029 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0884800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0042760 | RBH | 0.058816 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0042320 | RBH | 0.000000 | 0.000000 | 0.197549 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0017220 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0042130 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0041700 | RBH | 0.482928 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0693300 | SBH | 0.353433 | 0.722419 | 0.2737295 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0041340 | RBH | 0.029955 | 0.099317 | 0.103351 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0633100 | RBH | 1.555667 | 1.52039 | 2.139039 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0041710 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0041640 | RBH | 0.112942 | 1.870613 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0041910 | RBH | 1.458658 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0041850 | RBH | 0.110732 | 0.073909 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0041730 | RBH | 0.058098 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G042120 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0041810 | RBH | 0.000000 | 0.000000 | 0.000000 |
