Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0039990 | OGI:01108400 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:37363881-37375097 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggtaacacatggttgactacagccgctgcatatataagaaacagtaggaaattgtgtttttccggcacaaacataagaagactttgggaaacagtgtgcagcgaatagatatagcaccaattataagagtataagttctggcgatatttgattagaacgtgcatatcgtacagacaccacatactatttatacgaattcatttatcgttctgctagccactagggctcgcaagcctgtaagacgtagaagtaatgtcatttggtctaatggcttgcacaaaagaacacatcccctatttatattcccactgcaaaatacattgggcaaaatatgtgagcattagtcttgcttgatcagggacaggagtatacgccttggcatgccaggtgcaaaagaccgctttggtggggtgatattatatggagccctcaagtcctaaagggcaaaatgtaatgtacagtcagtttttctataacaaatgagcacacaggtaatatatagttggctaacaacgtttacttacattttgggggctgcgggggcagtttgtctacgaacagcgcacgcacaactgatgctttctgacaatcatgttcacgaggagatgaactacagatgcaatttgtttgagccatgagaaaactcaaagaaaaaaaataaggaacgtaaatatgaaactgtgcattgtcacttacccttcctgagcaagatcctcatcaattacagaagatttatgttttttgtctggttgtgccatagccaggacctgataaagcattagtggtcagttaggtttgataagggacagacatacatatttgctctaagtacagaatatagtgctagcctctgaagtaggcggtgttgtcccatgctgatcatcacggctatcagttgtggcctatgcataagcaatattaatataagaatttacaattgtttatatgcaagagagtacacattgctgcagaatgaagctattagattatacctttggatctggaagcaccagtggtgtagaaggtgtcatagattggagagaagagccaattatcgtgtgcggttcaattgcatcagctggtgatgagccatgttgagaagatgccacagaagcatcatggctgggcagagtacttgtgtgggctgcatctagtgaggctagcataagggaatccacttggtaagatatccgatttctttgcaatgagccacgtgacacactagttctaatgacatattgttttccaaaaactgctttgatttctgatggaactatatctcgtgctccttggacagatgcaaccaggttaagaaaagggatgccaatcaactggtagccaatttctccaaagaaggtaaactcagctgttttggcgtcatggttcgtctaatgggtcgacacctatgatagccactctgtacctattatagaaggtagcagaagtaggtcttatgttctatagctcaaattgtagcatactgaatggtttattatgtaaaataattgagaagagctgaacgtgtgtaggtggtaagagtaccttgtttcaattgcattagtgatgcacctcgagcatttatatgtgttcccttctctacctgctcctctcttactggtgttgcatgctatgtaccaccaggcttcagcagggactaaatccttgatggctatcttgacaatatagctgttgccctagttcacatgcgagaaacagaggaagtaaaggatggcactgataacacatggatggaaattatgcaatgtaatcattagatgtgggagtacactatattaccaaggcttcgtggggattaaggtcacagatatcaaaaacttttacatgcacagcttctttctgaccaaagttcggctctattgcccttaccacctgtgggttaccatggaggcttcaaatatgaaacagattagtgttttggtctgtaggctagggaaatatggttgatccatataacagataaactaaggaagatataagttgaacaaagaagaagcatgtttatgtgaatggaaagagtgcagaaacagatacctgcttatgagagaaattgtttcctagattggtgcattgggataccacctacaaacagtgctaccttgtagggctagctggtctggcaagcatgaaagagtacattatttaagcaagaacaggcaaatatgtaaatgggagaggtgataatagggtaagaatttatttcttaccgtctcggaatttaacagttaatccaacaaacaatataacaacaggtccatggtctggttgctgctgtaagttttcagcgtggaactgtgtagcatgggcaccccacaatgcaacgacagcagtttcgctgtaggcacatagaagaatgaagaggtggaaaataatgtgcatgaattaagctagtattcacatttgcaaataagagagttgtgaaacaatgttgatattataaacaaaaaagaaggattgtacatgtgtaaaaagaaactgacaatgcatgtgcggacaattaagtcattttgtatctaatacaaaagcagctggaacaattagcggattaacgcatacataccttccattggttatgtggacattaagcaccgctttcataacacctccacaagaaacagtttgcactggtccaatggctgtcattatacctatagcatctacaggagtagtataagggataaaatttgcacatgagtaagtgagagcagtaagcagggaatggacaaagctaataaggaatgagatagattgatctggaccaaacagagtcacctgaaagaatatctttcctgtaagcacgacctctgagttcatcaaaagaaagaaccttgtaagcatgagatgggaatgtggatggtgcctcagtgtcttctctaacggttgtgtgggcagtgaattttgccatgaccatccgatcaataggcctgtactgggggcgcgcctcagcaacttcgaagtacttgatgtaatacacagcatcctccttcagcaaaggcttgaattgagaaacatgacgtcctgggatctgcgcatccatcatgtacccttgttgatgtttggatgtgtaagagacaaatagcatggaggtaaaataaggcatgaccatgtgcttattgctatacctgctcatcaagcaggactaaatcaagtcgcagaatcttgtcaggttcatttgctgtagtgaactgcgagaagcgcgtgacccgcactcggacttgccaatggtgtgattcctgtgtcacattccttagcatagtgtaatccatctgcaacacataaagaaggcattacataggttagagggaaactataataataataatactttgcatgatatgaagatataaagtcctaattgttgaaggaactgtggtgcaggatatatctttttctttttcgaggtgggaaatgtttcccaactgacagtgtttcaagcaggcatgtttaaaagcaactgattgcatccaagagaagaatatgcaaaaataagaaagaacaattaataagcagatatggaagacactgcaacaatcaactggtcaaataggaagaacacaagtatgaacaacaactcattgaagggtaaaaagaaagcagtaacaaatagcgaaaaccaaaaatatggatagtcattgtggatagaacactgtatgaccatgagttcttgcttaagttacacaagcaaacagtaacacggagaaatgggatcatagaagaaacaggtgaacaaaaggagcaaagtttcctagccgcagtcacagtgacaaactgacaataagattaatctatagcaacgataatatttcagtgtagacgatgttcctggtagtggaacaaggcttgccatcatcatcctctatcaacaacttgaggccttgcttcgatgtagcgcgcaaaacagcgacatatagctgaccatgtgtgaagacagggtttctgaggtatacaccaacattccccaaagtttgcccttggcatttgtttattgtcattgcataacatagcctaattgggaactgccttcgctggagcgtgaaaggccactttggactgttcccacttaggacaatccatggaatacagaccagctggccaatatttgtgccagtcatgattttggactcgaaaacataatcactgagtcggatgaccatcaatcttgtctcattgcaaaggccgagtgattggttaatgttgcgaagcaggactacagctgaaccaattttgagggatatgcgatgttcctggaaattgtttatggatattgagtttagaaattctatggggtacaatagatcaaaatctacaggcttttcaagtgtatttgaaatagtgtcgctgctaagatagtcctttgcatccccaggcactttagcaagcatattatcattaatctcatcaacaactgtattgacaggacagacaattgcacgctgagaaaggtaaggaatgcagtcatagttcaattcaaaatctgggtacacagcatcaattatagctgtaatcttgtcaccgcagggagtaagcagcaactccttaggtatctctatccatgtcctctcaacctcaccttgtcttttgttcatgggagcacgaccctcaccaatgtcaagaacccatttagcaaactctgccaattcacccctggcttgctgcgacagggatggattatgtagcctcatgttagtggtaaggtgtaagacttcaacatgcttccatagtgcagacctaaccagcgaagcatctaccacatcagctcttgtacctttctcaatcaccggtaagacttgcctaaaatcaccaccaagtaaaatgggtttacctccaaaaggcttatattcattagctggttcatcagcggattgaatatctcgtagagttctatccaatgcctcaaagcacagcttgtgtgtcataggcgcctcatcccatataatcaatgatgctttcctaataagatctcctaggattgtccctctacgaatagcacacatcgaccgatcatgtatatctataggtatccgaaaccatgaatgagcaatccttccaccaggcatgagtagagctgcaaccccagaagaggcaactgcaagaacaatttcacctcttgatctcaggtttgccataatagcattccacaagaatgtcttccccgttccaccatgtccagatataaaaaaaaatacacttttcgtgatggtctatcctgtcaaaaatcttgtcatatatcatcttctggtcattgttcaagctggcatacatggacaaagattcttgatggaggctatgttggttaaagctaagatcttctaagataagcctgtttgctgcactggatcctgaacaatcaactggtgttggcaaattgtatgatgagattgataagccattatttgagaacatggcatccaactctttgagcaaggtatcctgcaacataacttctggaatagctgtgcgctgtactccaagagctttggttaacttgtaagcaaaatcatctaccatgtatctccagtacttatcaaacaaaaccctaacatcacctacatcacagtgtgctagtacagtcatgaaaaggttcctgagctggtatgaagtagcccagataactgcctcctcaaagaggtgatcccattcagcgtcatcaccaatgagaccacgtgcctgacaggcttcacgataggtgccatacagcacaccttcatatgtcctaatatcttcaaaactcatacatcctcgaactaccatgagcaacattctaaggtagaacggctcccagtacttggatggatgtgccttaatctccctatcttggttcctcttttacgctttgtccaaactttcttctcaggatcccagctaaacttggtaggaaattcacaataggtgagatccctggcaaagatgtgacgttggttggtagcaaccattcagtaagcattgttctagaggaatcagggtcttctatgacctcttcaaggtcagctccatcatggtatgtcacgaactgcatgctcggcaagtgcacaatgaggcgttcaacagaaggactccttccatggatctcaaaaccatataatctccagaatgattcacaagttgataggtatctggatttgatgtgttgcataacctcatctatgcctccattgctagcagtatgagcctctgtcttttctgaagtcctgtggctgaaaacgaacatagtcgaatcacttcccttatttatatacttaaaaaggtacttgataaggtatgttttattgcaccattccacattgatatgagcttggaatttcttcagaagagctggattataagggacaacccaccggttatctagtgaaacaccattcttcaccacatagcagccatcattgcgtcatcgataaataggatatccatcatcatctatggtagtaacatcacagaactgttttggatagccctttgaacaccgaccatccttcatgcaagggctgcttggattgtgctcaccacatgggccatgtatcatgaattcatcaacaagaccaacccacacctatcagctgttatatctggtatctcagcacagattaggttgtcaatgaatgcaggtgaaggatcttcagattgagctgtgagccatgttaatgtgtgggaatgcggcaatcctcttttttggaactcaacagtgtacacaactgaaaagcaaagcaacaagaaaagaacagataatgtgttaggggaagcaatagatgtgttaggaaggagatgtacgtaaagataggacagctatcatgaataagacaagtaacacaccagcttttatgggaccgaaggcttctccattcttaatagatgtgatgtactcatctagcttcatatggtaaacacgtgtgaccatatcacttctatcacttggtttttgccctgcctcaaaacgaatagcttcaataatctctggccatttagaattgcaggtgaaagttgagaatatttgaggaggaccgtaagaacggcagattgccattgaatcatggtagttttgaaccatgtatcgccttcctcctatgaaacttgatggcaaaattacttggtgccaacatcctttccatcactgtctcccctagcaacagcatcagatataccttgatgtgtctcagagcgaagttttttctggttgagggcatggtatatgagtcgagatgtctctatacatgagaaagcattcacagcgagctgatcagaaagcctaccacaacaggtgaatggattgggctcatcctttcgatagtgggactcgtaccgataaaattcaagcatcgatgcttcgtcgtgactaccgggtggctgatcatctacctctctaagcttgataccagtatgaaaacccacatcaccatatgggaatagaagcgggtactgcaatgacataagggctggatgaataggtgacaactgacataactcacctgaatgcttctgcacaatgacatcaaactttgatacctcacaagatgcactaggtataatcagtgctgccaactcagaggtggtgggaaggctgtaacggtcactctgagaatggcctgacccaatgagcttgatagcaatctcaggagcacttgaagaaagcagcttgtttcgagcaagacggaactgctgcacaagaggattgaactgatcaagcatcgagataagctcttgcacaataacaggatcagggacatccccaggattatcagtgtgatcaaaaatattaagcctattctggagctcattggcggtgtcatatatgtacagctgggcgaattccggacgttgtccaggagcaggaaccagagaaccaattctgtgatggacaacaccattgatatgaaaacataaggccccggaccagtgtttatgctcctatcaatgttagccccaagcgatgtgaatgcaaataatgaattatattgcctgatgagtcgcatgaaagagttggaatgggcaccgccatcaaaacgaatcaagtcttgtaagataggaggaaaaggcttgggtgcgggtaaggagatctttccaccacgacaacacagattgtatgcaatcctcttggctctgtgcgagctctggctaacaaccctttcttggtaccaaaataatgcaccacaatgattgcattcatagtcagggccaccataataggagcgatctgggtacgtagctataagagcggaaaggaaacctataagtagagaagcatgcatatgtttgtccagaaatagatagagaggcaaaaaaaagggacaaaggcgaagcaaagcaaggttggtactaagatattacctttaagaatttgcatgtgctcctttggtatggaatatgtgaatctcatcgacagtgaacgcggcacatgttctgtgcaaatagaagaagaacggaagaagagaaatagcaaataagaaataaaggtaaacaaaagcaagaaagaacatcgccataagcgacaagaaaggatcatgtacataagcaggtcaagaaccttgtcgcaaaataagacgcattttcctagcggcctgtcttttttcccggttcactcgagcaacacgtgctggcactattgggcaaaaatgatctcctatgaaaaatttaaacaggaaaaacaatcaatcggaagaagggaaaatgccttagcaagctaagcaacacaacaaatagtagtccagagctaactgttgggtcgagaagactgaatgtggccagctccacaactccctgtggaagtgatgcgaggagatagaatgagggatcggagagaaaacaaagctaagctagaaagaaccaatgagcaaatagatgaacttatcaatatgaacatacattttgagtatatcatatcacagcaagtggacaactgtacaaaaatatgagaaaatggatgtgcaagggataagagatgacactaaacattgagacagcagcgactacagcaagcgtacatacctatagtgcatgatgaactacccgtgagcattgagaacccagtggcaccgtgggatgatgacggctcatctatcagaaggcagaattgcgaatcaggaaacaaaaaaacaacaattatcctaatgacctcgctaactctcagactattgagcgtacatacctatggcacatgacacaccacccgtgagctctaagtgcttattggcagcagatgatatggaggacccatctattggtgagcaaaagtgtgaatcagggaaaaaaaggatcgctaatggccttgctaactccgaggcttgcatacgaaactataatgatatcaccaagtaccatgtggacgcttccgcgggcagatgcgaacgaatctggatggctccatgtcatttctatacaccaagaaacgaaaggagcaaaatatagacacattcggaaaaacatatggatgaatatataatggagagggaaagcataaagaacagaggcacgagctactatagaaatatggaagaaagatagatgcatataagcaagcactgaataactggacataatatgacatatctaacagcaacaaagtgggaaatcatcaagagctgaaccaggagctctcggatgcttagactggaacatacaaatatttgaaaatgcgtttacgaaaatggtaaaacaccaaagacataaccacattgaaaggctaacccaaacatataactgtataaggtccagcaaagaaagaaacagatggacgccgaacgaaatcaactggcaacaacacaagcgttcgaaaaacaaccaagaatatatatcacagcggaacaatgtaaaacaaagtaatcagtaattgaaggagggaaaaaaagaggagcgaatatatatcatagcggaacaatgtaaaacaaagcaattggtaactgaaggagggaaaaaagaggagcaccatatatacgaaatccaccgaacagctatactggagacaaaagcatctcggtttatacatatcgcagcatcgcatatgtgaaatgaactaaacatgtatcccacataagcgataaaaaaaccaacctacgaaagaatatataacatagcaggacaatagaaaaatgaaataatgtaaatatatgccaaagcacagctaattagcaatccaagggaaaaaaacagaggagcaccatatatgcgaaatcaagcaaacaggtattcgctgacataatcatctcagtttatccatataccacagctccacacatatgtaatgaactcaacagctatcccagtgataaaacaatgtgatcttgtactaaataccttagcgagcattagctgacgaaggcaaagatgcccccctccctccccccaaaagaagatgcgatgtgtgggagagacgccaattggagcccgcaacctggaaggcagagaaaaaaaatacactgagcacacgcatggatggaacaatgtcggcatcgcaatggggaaatcgacagcgagacacggcaggaaagatgaaaaacgaaataacataaatatatgccaaatcgtagctaatcaggaatccaatgaaaaaaaacagaggggaaccatatatgcgaaatgaagtgaacaaacatccagtgacataatcatctcagtttacccatataccacagcaccacacgtacgtactgaactgaacaggcatctccgtgataaaaccaggtgatcttatactaaataccttagcgagaagtagctgagggaggcaaagatgccccctccctccccccaaagcaagacgtgatgtgggagagacaccaatccaagagcgcagcctggaaggcataaaacagggaaaaaacagtgagcacaagtatggctggcacaacatcggcactgcaatggggaaatcgagagcttgcaatggggaaatcgagagcgagcacagcaggaacggtcggaccacacgagacgatgcggtgagggaaaccaccgagctagaaatccccaagaactaagcgggaggagcagcaaatagaaccagctccatatatggaagaaaaaagggagtggaagaaagaaggagcgatgcagattacctcccctggtcctcatagggctctccgcgtagtggagcagcagccgtagccagccccgtcgtcgtcgtacgcccatggcagagcactatcgttgctccgtcgctgatggtcagataggggatggagaaggggcacgcgtcgagaggatagcggc
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| CDS seq | atgggcgtacgacgacgacggggctggctacggctgctgctccactacgcggagagccctatgaggaccaggggaggctgcgctcttggattggtgtctctcccacatcacgtcttgctttggggggagggagggggcatctttgcctccctcagctacttctcgctaagaaatgacatggagccatccagattcgttcgcatctgcccgcggaagcgtccacatggagatcatttttgcccaatagtgccagcacgtgttgctcgaatggattacactatgctaaggaatgtgacacaggaatcacaccattggcaagtccgagtgcgggtcacgcgcttctcgcagttcactacagcaaatgaacctgacaagattctgcgacttgatttagtcctgcttgatgagcagatcccaggacgtcatgtttctcaattcaagcctttgctgaaggaggatgctgtgtattacatcaagtacttcgaagttgctgaggcgcgcccccagtacaggcctattgatcggatggtcatggcaaaattcactgcccacacaaccgttagagaagacactgaggcaccatccacattcccatctcatgcttacaaggttctttcttttgatgaactcagaggtcgtgcttacaggaaagatattctttcagatgctataggtataatgacagccattggaccagtgcaaactgtttcttgtggaggtgttatgaaagcggtgcttaatgtccacataaccaatggaagcgaaactgctgtcgttgcattgtggggtgcccatgctacacagttccacgctgaaaacttacagcagcaaccagaccatggacctgttgttatattcctccatggtaacccacaggtggtaagggcaatagagccgaactttggtcagaaagaagctgtgcatgtaaaagtttttgatatctgtgaccttaatccccacgaagccttgacgaaccatgacgccaaaacagctgagtttaccttctttggagaaattggctaccagttgattggcatcccttttcttaacctggttgcatctgtccaaggagcacgagatatagttccatcagaaatcaaagcagtttttggaaaacaatatgtcattagaactagtgtgtcacgtggctcattgcaaagaaatcggatatcttaccaagtggattcccttatgctagcctcactagatgcagcccacacaagtactctgcccagccatgatgcttctgtggcatcttctcaacatggctcatcaccagctgatgcaattgaaccgcacacgataattggctcttctctccaatctatgacaccttctacaccactggtgcttccagatccaaaggtcctggctatggcacaaccagacaaaaaacataaatcttctgtaattgatgaggatcttgctcaggaaggttcatctcctcgtgaacatgattgtcagaaagcatcagttgtgcgtgcgctgttcgtagacaaactgcccccgcagcccccaaaattgggaatataa
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| Protein seq | MGVRRRRGWLRLLLHYAESPMRTRGGCALGLVSLPHHVLLWGEGGGIFASLSYFSLRNDMEPSRFVRICPRKRPHGDHFCPIVPARVARMDYTMLRNVTQESHHWQVRVRVTRFSQFTTANEPDKILRLDLVLLDEQIPGRHVSQFKPLLKEDAVYYIKYFEVAEARPQYRPIDRMVMAKFTAHTTVREDTEAPSTFPSHAYKVLSFDELRGRAYRKDILSDAIGIMTAIGPVQTVSCGGVMKAVLNVHITNGSETAVVALWGAHATQFHAENLQQQPDHGPVVIFLHGNPQVVRAIEPNFGQKEAVHVKVFDICDLNPHEALTNHDAKTAEFTFFGEIGYQLIGIPFLNLVASVQGARDIVPSEIKAVFGKQYVIRTSVSRGSLQRNRISYQVDSLMLASLDAAHTSTLPSHDASVASSQHGSSPADAIEPHTIIGSSLQSMTPSTPLVLPDPKVLAMAQPDKKHKSSVIDEDLAQEGSSPREHDCQKASVVRALFVDKLPPQPPKLGI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0039990 | OsCMeo_01g0039990.02 | Chr01 | 37363881 | 37375096 | - | NAM | ||
| CDS seq | atgggcgtacgacgacgacggggctggctacggctgctgctccactacgcggagagccctatgaggaccaggggaggctgcgctcttggattggtgtctctcccacatcacgtcttgctttggggggagggagggggcatctttgcctccctcagctacttctcgctaaggttgcgggctccaattggcgtctctcccacacatcgcatcttcttttggggggagggaggggggcatctttgccttcgtcagctaatgctcgctaagatggattacactatgctaaggaatgtgacacaggaatcacaccattggcaagtccgagtgcgggtcacgcgcttctcgcagttcactacagcaaatgaacctgacaagattctgcgacttgatttagtcctgcttgatgagcagatcccaggacgtcatgtttctcaattcaagcctttgctgaaggaggatgctgtgtattacatcaagtacttcgaagttgctgaggcgcgcccccagtacaggcctattgatcggatggtcatggcaaaattcactgcccacacaaccgttagagaagacactgaggcaccatccacattcccatctcatgcttacaaggttctttcttttgatgaactcagaggtcgtgcttacaggaaagatattctttcagatgctataggtataatgacagccattggaccagtgcaaactgtttcttgtggaggtgttatgaaagcggtgcttaatgtccacataaccaatggaagcgaaactgctgtcgttgcattgtggggtgcccatgctacacagttccacgctgaaaacttacagcagcaaccagaccatggacctgttgtggtaagggcaatagagccgaactttggtcagaaagaagctgtgcatgtaaaagtttttgatatctgtgaccttaatccccacgaagccttgggcaacagctatattgtcaagatagccatcaaggatttagtccctgctgaagcctggtggtacatagcatgcaacaccactgatgcaattgaaccgcacacgataattggctcttctctccaatctatgacaccttctacaccactggtgcttccagatccaaaggtcctggctatggcacaaccagacaaaaaacataaatcttctgtaattgatgaggatcttgctcaggaaggttcatctcctcgtgaacatgattgtcagaaagcatcagttgtgcgtgcgctgttcgtagacaaactgcccccgcagcccccaaaatga
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| Protein seq | MGVRRRRGWLRLLLHYAESPMRTRGGCALGLVSLPHHVLLWGEGGGIFASLSYFSLRLRAPIGVSPTHRIFFWGEGGGHLCLRQLMLAKMDYTMLRNVTQESHHWQVRVRVTRFSQFTTANEPDKILRLDLVLLDEQIPGRHVSQFKPLLKEDAVYYIKYFEVAEARPQYRPIDRMVMAKFTAHTTVREDTEAPSTFPSHAYKVLSFDELRGRAYRKDILSDAIGIMTAIGPVQTVSCGGVMKAVLNVHITNGSETAVVALWGAHATQFHAENLQQQPDHGPVVVRAIEPNFGQKEAVHVKVFDICDLNPHEALGNSYIVKIAIKDLVPAEAWWYIACNTTDAIEPHTIIGSSLQSMTPSTPLVLPDPKVLAMAQPDKKHKSSVIDEDLAQEGSSPREHDCQKASVVRALFVDKLPPQPPK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0039990 | OsCMeo_01g0039990.04 | Chr01 | 37364178 | 37373673 | - | NAM | ||
| CDS seq | atgctgtgtattacatcaagtacttcgaagttgctgaggcgcgcccccagtacaggcctattgatcggatggtcatggcaaaattcactgcccacacaaccgttagagaagacactgaggcaccatccacattcccatctcatgcttacaaggttctttcttttgatgaatactcctgtagatgctataggtataatgacagccattggaccagtgcaaactgtttcttgtggaggtgttatgaaagcggtgcttaatgtccacataaccaatggaagcgaaactgctgtcgttgcattgtggggtgcccatgctacacagttccacgctgaaaacttacagcagcaaccagaccatggacctgttgttatattcctccatggtaacccacaggtggtaagggcaatagagccgaactttggtcagaaagaagctgtgcatgtaaaagtttttgatatctgtgaccttaatccccacgaagccttgacgaaccatgacgccaaaacagctgagtttaccttctttggagaaattggctaccagttgattggcatcccttttcttaacctggttgcatctgtccaaggagcacgagatatagttccatcagaaatcaaagcagtttttggaaaacaatatgtcattagaactagtgtgtcacgtggctcattgcaaagaaatcggatatcttaccaagtggattcccttatgctagcctcactagatgcagcccacacaagtactctgcccagccatgatgcttctgtggcatcttctcaacatggctcatcaccagctgatgcaattgaaccgcacacgataattggctcttctctccaatctatgacaccttctacaccactggtgcttccagatccaaaggtcctggctatggcacaaccagacaaaaaacataaatcttctgtaattgatgaggatcttgctcaggaaggttcatctcctcgtgaacatgattgtcagaaagcatcagttgtgcgtgcgctgttcgtagacaaactgcccccgcagcccccaaaattgggaatataa
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| Protein seq | MLCITSSTSKLLRRAPSTGLLIGWSWQNSLPTQPLEKTLRHHPHSHLMLTRFFLLMNTPVDAIGIMTAIGPVQTVSCGGVMKAVLNVHITNGSETAVVALWGAHATQFHAENLQQQPDHGPVVIFLHGNPQVVRAIEPNFGQKEAVHVKVFDICDLNPHEALTNHDAKTAEFTFFGEIGYQLIGIPFLNLVASVQGARDIVPSEIKAVFGKQYVIRTSVSRGSLQRNRISYQVDSLMLASLDAAHTSTLPSHDASVASSQHGSSPADAIEPHTIIGSSLQSMTPSTPLVLPDPKVLAMAQPDKKHKSSVIDEDLAQEGSSPREHDCQKASVVRALFVDKLPPQPPKLGI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0039990 | OsCMeo_01g0039990.01 | Chr01 | 37366541 | 37375097 | - | NAM | ||
| CDS seq | atgggcgtacgacgacgacggggctggctacggctgctgctccactacgcggagagccctatgaggaccaggggaggctgcgctcttggattggtgtctctcccacatcacgtcttgctttggggggagggagggggcatctttgcctccctcagctacttctcgctaaggttgcgggctccaattggcgtctctcccacacatcgcatcttcttttggggggagggaggggggcatctttgccttcgtcagctaatgctcgctaagatggattacactatgctaaggaatgtgacacaggaatcacaccattggcaagtccgagtgcgggtcacgcgcttctcgcagttcactacagcaaatgaacctgacaagattctgcgacttgatttagtcctgcttgatgagcagatcccaggacgtcatgtttctcaattcaagcctttgctgaaggaggatgctgtgtattacatcaagtacttcgaagttgctgaggcgcgcccccagtacaggcctattgatcggatggtcatggcaaaattcactgcccacacaaccgttagagaagacactgaggcaccatccacattcccatctcatgcttacaaggtataa
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| Protein seq | MGVRRRRGWLRLLLHYAESPMRTRGGCALGLVSLPHHVLLWGEGGGIFASLSYFSLRLRAPIGVSPTHRIFFWGEGGGHLCLRQLMLAKMDYTMLRNVTQESHHWQVRVRVTRFSQFTTANEPDKILRLDLVLLDEQIPGRHVSQFKPLLKEDAVYYIKYFEVAEARPQYRPIDRMVMAKFTAHTTVREDTEAPSTFPSHAYKV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0039990 | OsCMeo_01g0039990.03 | Chr01 | 37364178 | 37375096 | - | NAM | ||
| CDS seq | atgggcgtacgacgacgacggggctggctacggctgctgctccactacgcggagagccctatgaggaccaggggaggctgcgctcttggattggtgtctctcccacatcacgtcttgctttggggggagggagggggcatctttgcctccctcagctacttctcgctaagaaatgacatggagccatccagattcgttcgcatctgcccgcggaagcgtccacatggagatcatttttgcccaatagtgccagcacgtgttgctcgaatggattacactatgctaaggaatgtgacacaggaatcacaccattggcaagtccgagtgcgggtcacgcgcttctcgcagttcactacagcaaatgaacctgacaagattctgcgacttgatttagtcctgcttgatgagcagatcccaggacgtcatgtttctcaattcaagcctttgctgaaggaggatgctgtgtattacatcaagtacttcgaagttgctgaggcgcgcccccagtacaggcctattgatcggatggtcatggcaaaattcactgcccacacaaccgttagagaagacactgaggcaccatccacattcccatctcatgcttacaaggttctttcttttgatgaactcagaggtcgtgcttacaggaaagatattctttcagatgctataggtataatgacagccattggaccagtgcaaactgtttcttgtggaggtgttatgaaagcggtgcttaatgtccacataaccaatggaagcgaaactgctgtcgttgcattgtggggtgcccatgctacacagttccacgctgaaaacttacagcagcaaccagaccatggacctgttgttatattcctccatggtaacccacaggtggtaagggcaatagagccgaactttggtcagaaagaagctgtgcatgtaaaagtttttgatatctgtgaccttaatccccacgaagccttgacgaaccatgacgccaaaacagctgagtttaccttctttggagaaattggctaccagttgattggcatcccttttcttaacctggttgcatctgtccaaggagcacgagatatagttccatcagaaatcaaagcagtttttggaaaacaatatgtcattagaactagtgtgtcacgtggctcattgcaaagaaatcggatatcttaccaagtggattcccttatgctagcctcactagatgcagcccacacaagtactctgcccagccatgatgcttctgtggcatcttctcaacatggctcatcaccagctgatgcaattgaaccgcacacgataattggctcttctctccaatctatgacaccttctacaccactggtgcttccagatccaaaggtcctggctatggcacaaccagacaaaaaacataaatcttctgtaattgatgaggatcttgctcaggaaggttcatctcctcgtgaacatgattgtcagaaagcatcagttgtgcgtgcgctgttcgtagacaaactgcccccgcagcccccaaaattgggaatataa
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| Protein seq | MGVRRRRGWLRLLLHYAESPMRTRGGCALGLVSLPHHVLLWGEGGGIFASLSYFSLRNDMEPSRFVRICPRKRPHGDHFCPIVPARVARMDYTMLRNVTQESHHWQVRVRVTRFSQFTTANEPDKILRLDLVLLDEQIPGRHVSQFKPLLKEDAVYYIKYFEVAEARPQYRPIDRMVMAKFTAHTTVREDTEAPSTFPSHAYKVLSFDELRGRAYRKDILSDAIGIMTAIGPVQTVSCGGVMKAVLNVHITNGSETAVVALWGAHATQFHAENLQQQPDHGPVVIFLHGNPQVVRAIEPNFGQKEAVHVKVFDICDLNPHEALTNHDAKTAEFTFFGEIGYQLIGIPFLNLVASVQGARDIVPSEIKAVFGKQYVIRTSVSRGSLQRNRISYQVDSLMLASLDAAHTSTLPSHDASVASSQHGSSPADAIEPHTIIGSSLQSMTPSTPLVLPDPKVLAMAQPDKKHKSSVIDEDLAQEGSSPREHDCQKASVVRALFVDKLPPQPPKLGI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 37364188 | 37364405 | - | OsCMeo_01g0039990.02 | OsCMeo_01g0039990.02,OsCMeo_01g0039990.03,OsCMeo_01g0039990.04 | All |
| A3 | Chr01 | 37366923 | 37367021 | - | OsCMeo_01g0039990.04 | OsCMeo_01g0039990.02,OsCMeo_01g0039990.01,OsCMeo_01g0039990.03,OsCMeo_01g0039990.04 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.869186 | 0.000000 | 6.875729 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0846000 | RBH | 2.677860 | 2.082079 | 2.833298 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g43990 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0846000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0040120 | RBH | 0.673040 | 0.000000 | 4.264167 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0039580 | RBH | 0.267528 | 0.426021 | 3.273119 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0016640 | RBH | 1.991272 | 1.458120 | 9.063923 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0039450 | RBH | 0.414962 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0039070 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0600200 | RBH | 0 | 0.0579905 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0038760 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0597700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0039110 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0039050 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0039280 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0039280 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0039130 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G039610 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0039290 | RBH | 0.0 | 0.0 | 0.000000 |
